ID:

dsi_3662

 Coordinate:

3l:2516896-2517110 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.4 -25.4

Flybase annnotation

five_prime_UTR [3l_2517111_2517265_-]; exon [3l_2517111_2517265_-]; five_prime_UTR [3l_2516510_2516895_-]; exon [3l_2516340_2516895_-]; intron [3l_2516896_2517110_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. 2l:7650450-7650464 -
  2. 2l:11509156-11509170 -
  3. 2r:12226411-12226425 +
  4. dsi_3662  3l:2516905-2516919 -
  5. x:11071733-11071747 +
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCGCGGAGGCACTGAGAGAAAACTAGTGCTCGTATCGCTAGTAATTTCGGTAATTTTGCATAGAAAAAAAAGAACCTAAAATAGAAGAAAATATTTGTTAAAATATTCTAATGCCAAAAACAATAGTGTTGGAAACCAAATAAATAAATTTGAAAAATCAATGATAGTATTGAAAAAAATTAATTTTTTAATATTCCCCAAATTAGGAAAAAGAATGTCTTACTAATAAAATTTTTTTTCGTTTTTTAAGAAAATATTTTATAGACGTGATCGCAATTATTTATGGTTTCCAAAATTTTAAAATTAAGTTTTTC
**************************************************............................((((..((((((((..(((((((..(((((((....((((..((....)).))))....(((((......)))))..............(((((((((((......)))))))))))(((........)))...))))))).....)))))))..))))))))..))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
..............................TCGTATCGCTAGTAATC............................................................................................................................................................................................................................................................................ 17 1 1 1.00 1 1 0 0 0 0 0 0
TTCGCGGAGGCACTGAGAGAAAACTA................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0
...................................TCGCTAGTAATTTCGG........................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TTTCTGGTTTCCAAAATT................. 18 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTGTTAGAATATTCGAATCCCAA..................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................ATAAAATTCTTTTTCGGTTTT.................................................................... 21 2 4 0.50 2 0 1 0 0 1 0 0
..................................ATCGCTAGTAATTGCGG........................................................................................................................................................................................................................................................................ 17 1 2 0.50 1 1 0 0 0 0 0 0
.................................................TGTAATTTTGCAGAGAAAAAAAA................................................................................................................................................................................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................GAATAAAATTCTTTTTCGGTT...................................................................... 21 3 9 0.33 3 0 0 0 0 3 0 0
...................................TCGCTAGTAATCTCGG........................................................................................................................................................................................................................................................................ 16 1 3 0.33 1 1 0 0 0 0 0 0
...................................................TAATCTTGCATCGAAAAAA..................................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0
....................................................AATTTTGCATCAGAAAAAAAGA................................................................................................................................................................................................................................................. 22 3 4 0.25 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................CCGAATGAGGAAAACGAATG................................................................................................. 20 3 9 0.22 2 0 0 0 0 0 2 0
.................................................................................................................................................................................................................................................GTTTTTTAAGAAAAT........................................................... 15 0 5 0.20 1 0 0 1 0 0 0 0
...................................TCGCTAGTAATCTCG......................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0
....................AAACTAGTGCTCTTA........................................................................................................................................................................................................................................................................................ 15 1 13 0.15 2 0 0 2 0 0 0 0
.........................................................................................................................................................................................................AATTTGGAGAAAGAATGGCT.............................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 1
........................TAGTGCTCGTCTCGGT................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 2 0 0
...............................................................................................................................................................CAATGATTGTACTTAAAAAAA....................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 1 0
TTCTCAGAGGCACTGAAAGA....................................................................................................................................................................................................................................................................................................... 20 3 14 0.07 1 1 0 0 0 0 0 0
.................................AATCGCTAGTAATTCCGA........................................................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTCCCCAAATTGGGAGGAA...................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................AAATGATAGTATTGA............................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0
...................................TCGCTAGTAATCTCTG........................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................................................TTAGTATTGAAAAAAA....................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

AAGCGCCTCCGTGACTCTCTTTTGATCACGAGCATAGCGATCATTAAAGCCATTAAAACGTATCTTTTTTTTCTTGGATTTTATCTTCTTTTATAAACAATTTTATAAGATTACGGTTTTTGTTATCACAACCTTTGGTTTATTTATTTAAACTTTTTAGTTACTATCATAACTTTTTTTAATTAAAAAATTATAAGGGGTTTAATCCTTTTTCTTACAGAATGATTATTTTAAAAAAAAGCAAAAAATTCTTTTATAAAATATCTGCACTAGCGTTAATAAATACCAAAGGTTTTAAAATTTTAATTCAAAAAG
**************************************************............................((((..((((((((..(((((((..(((((((....((((..((....)).))))....(((((......)))))..............(((((((((((......)))))))))))(((........)))...))))))).....)))))))..))))))))..))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
......................................................................................................................................................................................................................................................CCTTCTTGTATAAAATATCTGCA.............................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................ACCAAAGGTTTCTAAATTAT........... 20 3 20 1.00 20 0 0 8 6 0 3 2 0 1
..................................................................................................................GGTTTTTGTGATCACAAGCT..................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................AGGATAGCGCTCATT.............................................................................................................................................................................................................................................................................. 15 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..........GAGACTCTCTGTTGAT................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................ACCAAAGGTTTCTAAATT............. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................TGTTTTTAGTTACTATCA.................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................ACTGTCTGCACTAGCG........................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................TTTTCTTAAAGAATG........................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2516846-2517160 - dsi_3662 TTCGCGGA--GGCACTGAGAGAAAA-CTAGTGCTCGT-----------------------AT---CGCTA------------------------------------------------GTAATTTCGGTAATTTTGCATAGA---A-AAAAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTAAAAT----AGA-----AGA-------------------AA-----------------------------------------------------------------------------ATATTTGTTA----------------------AAATAT------------------------------TCTAA-----------------------------------------------------------------TGCCAAAAACAATAGTGTTGGAAAC-CAAATA---AATAAATTTGAAAAATCAATGATAGTATTGAAAAAAA-TTAA--TTTTTTAA----------------TATTCC--------------------------------------------------------------------CCAAATTA-----------------------------------------------------------------------------------------------GGAAAA------------------AGAATGTCTTACTAA-TA---------AAA-------------------------TTTTTTTTCGT-------------------------------------------------------------------------------TTTTTAAGAAAATATTTTATAGACGTGATCGCAATTATTTATGG---------------------------TTTCCAAAATTTTA---AAAT--------------------TAAGTTTTTC
droSec2 scaffold_11602:155-431 - TTCGCGGA--GGCACTGAGAGAAAA-CTATCGCTCGA-----------------------AT---CGCTG------------------------------------------------GTAA-TTCGGTAATTTTGCATAGC---A-AAGCGAG--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-------------------AA-----------------------------------------------------------------------------ATATTGGTTA----------------------AAATAT------------------------------TCGAA-----------------------------------------------------------------TGTCCAAAACAATAGTGTTGGAAAT-CAAGTG---AATCAATTTGAAAAATCCAGGATAGTATTGAAAAAAAATCAATTTTTTTGAA----------------TATTCC--------------------------------------------------------------------CAAAATTA-----------------------------------------------------------------------------------------------GAAAAT------------------AGATTGTTTAAAAAA-AA---------AAA---------------------------TATACTCGT-------------------------------------------------------------------------------TTTTTAAGAAAAGATTTTATAGA---------------------------------------------------CAAACATTTTT---AAAT--------------------TA--TTTTTC
dm3 chr3L:2629651-2629962 - TTCGCGGA--GGCACTGAGAGAAAA-CTATCGCTCGA-----------------------AT---CGCTA------------------------------------------------GTAA-TTCGGTAATTTTGCTTAGC---A-AAGCGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAGAAAT----AGG---A-AGA-------------------AA-----------------------------------------------------------------------------ATATTTGTTA----------------------AAATAAAAAA------------------AATAGTTGTCTAA-----------------------------------------------------------------TGCCCAAAACAATAGTGTTGGAAAA-CAAATG---AACAAATTTGTAAAATCCAAGATAGTATTGAAGAAAAAAAGAATTTTTTAAA----------------TATTCC--------------------------------------------------------------------CT----------------------------------------------------------------------------------------TTGGAATTAGATAGGAAAT------------------AGATTGGATTACTAA-AAATTATATTAAAT---------------------------TATATTCGT-------------------------------------------------------------------------------TTT---------------ATAG-----------------------------ATACG---------------TTTCCAAAATTTTT---AAAT--------------------TAAGTTTTTC
droEre2 scaffold_4784:2648716-2649001 - TTCGCGGG--GGCACTGAGAGAAAA-CTGTCGCTCGA-----------------------AT---CGTTA------------------------------------------------GTAG-TTCGCTACTTTTGCATTGC---A-AAAAAG-ATGGGA-GC----------------------------------------------------------------------------------TCAATTATA------------------------------------------------------AGACTTTGTGGCACTGAAGT----AGA-----AGA-------------------GT-----------------------------------------------------------------------------GTATTTCTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTAAGTGAACAACTGAATTGGAAGAATATATTTCTAAATATTTAAATGACGAACTGAGTTCGAGGAAAATATTTCTAAATATTTAAATGACCA-------------------ACT----GAGTTCGAAGAAA---ATATTTCCAAA------------------------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------TTT---AAGTGACCAACTGA---ATTGGAAGAATATATTT
droYak3 3L:9306655-9306919 + TTCGCGGA--GGCACTGAGAGAAAA-CAGTCGGTCGA-----------------------AT---CGTTA------------------------------------------------GGAA-TTCGGTAATTTTGATTAGC---A-AAACAGG--GAGAAGTTTTAG-----------------------------------------------------------------------------CCTATAGTA------------------------------------------------------AAAACTTGTGGAACTAAAAT----AGA---A-AAA-------------------GA-----------------------------------------------------------------------------ATATTTGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAAATGCCCAACTGAAATAAAAGAAAATATTTATAAATTATAAAGTGACTAACTGAAATAGAAGAAAGTATTACTTAATATTTAAATGGCAA-------------------ACT----GAAATAGAAGCAA---AAATTTCGAAA------------------------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------TTT---AAAT------------------------------
droEug1 scf7180000409466:356346-356686 - TTCGCGAA--GGCACTGAGAGAAAA--TATCAGTGGT-----------------------AT---TGGTA------------------------------------------------AAGT-TTCGGTAACTTTCGCTTGTTGTA-AA-AAAA--GAGAG-C-TTTGCTA--------------------------------------------------------------------------GCTA----TAATTTAAAGTTAAAAAAGATTTATAA----AACTCAATTCAA-------------------ATATTTTTTACTT-----TG-----AAA-------------------AACTGTTTAACCTTTTTAGTCTTATGGT-----------------------------------------------------------------------------------------------------------------------CTTAA-TTTGCAA---------------------------------------------------------GACC------AAAACTAAACGAAATTTAAATTAGAAATTTGTTTTAAAAAATAGAACAAATATTAAAAAACG-TTTA--TTTTTAAA----------------TGAGTT--------------------------------------------------------------------TTAAATCA-------------------------------------------------------------------------------------------AA-------------------TCGAATAAGATCAAATTTCTGAA------------------------------------------------------------------------------------TA--TTTTTTGTTTAA-------------------------------------------------------------------------------------------------------------------------------CTTTTTTATTATAATTT-CTTTCC
droBia1 scf7180000302428:9407932-9408341 - TTCGCGGG--GGCACTGAGAGAAAA--TATCTGTGAA-----------------------AT---CGCTT------------------------------------------------GCCT-TTCGGTAA--------AGC---A-AA-CAAG--GAGAA-C-TGAGCATCTATTCAAACTGTGTAA--AAACTTTAATATTTTAAAATATTTTAAAAATCAGTGCTTGCAAAGTGGAATACTAATTATGGCA------------------------------------------------------TAAAACTATTTTTTTATTTTTATTATAC-AATAAAAACTGCTTAGTGGCAAACCAA-----------------------------------------------------------------------------ATATTTATAG----------------------TGTATATTAAAAGCTTCAATTTCTTTTTTGTAGAATTCCTA--T-----------------------------------AATAAAAAACA----------------------------------------TTAAAATAA------------------------------------------TA--TTTTTACA----------------AGTGTC--------------------------------------------------------------------CCAAAA-------------------------------------------------------------------------------------------------GAA----------------------------------------------------------------------------------------------------------------------AATTGTGTTTTTTGTTTAATTTGAAATAATTA---------------------------------TTTTTACAAGATCTTAATACTATAAGCCTTAAAGGAATGACTCTTATTTTCATAA--------------------------CTTAAAATC---------TAAAAT
droTak1 scf7180000415857:426184-426419 - AAATAT--------------------------------------------------------------------------------TTAAAAATTAAAAATGTATCATAGCATAAATAATAATCAAGGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTATACTTTTATTAGT-----AAA-------------------AA-----------------------------------------------------------------------------ATCTTTATCA----------------------TGATTATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCTTTTTCAAATATCCCAAAAATTAGT----------------------------------------------------------------------------------------------------------------------------TTCATAAA-CT---------GGA-------------------------TTTTTTTTAAT------ACACATTTATTACAAATGTGGCAAAAACCGTGATTTTT-TTTAATAGTTAATAGTTA---------------------------------ATTA--------------------------------------------------CATATAAAATCTTA---AAA----------------------ATGTCTTAA
droEle1 scf7180000491249:2750937-2750959 + TTCGAGGA--GACACTGAAAGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000758401:32919-33387 + TTCGCCGA--GACACTGAGAGAAAA--TATCGGTAAC-----------------------AT---TGCTT------------------------------------------------ACAG-TTCGATGAGTTTTCAAATC---A-GTAAAG-AGTGTA-GT----------------------------------------------------------------------------------TCTATCGCT------------------------------------------------------GGTTTAAATTAAACTTAAAT----GGA-----AAA-------------------CACTTTTTAACACCCTAAATTTTAAGATTTTAAAATTTTACTGAAATATAATTTTAGAAGTTCAGATCTTTAGTTAAAGATTTTTAACACATATTATTAATATACAAGTGAAAATTTAAAA------------------ATCTGCTGT--------------------------------------------------------------------------------------------CT-CTAATA---AGTAATTTTGAAAAGTGTAAAGTAA--CTGATTATAAATAAAACTTTTTTGA----------------GATTACATTAATTTGGAAAGTGTTAAAGAAACTTTACAAATTATAATTTAGA--------------------------------------------------------------------------------------------------------------------------------AAT------------------TGTTGGTATTACTTA-AAATAAACTAGAGTTAAATTTAAAAATAAGTTATACATAAT------GCTTTACCAC--------------------------------------------------------AAATGTTGTATAA--------------------------------------------TAT---------------------------TTTGCAAAATTCATAAGAAAT--------------------TGTATTTTTA
droFic1 scf7180000454105:956903-956924 - TTCGCGGA--AGCACTGGGAGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302441:1077175-1077625 + A-CGCGGCAACGCACAGAAAGC--C-ATATCTCTGAAAAAATATTTAAGAAAAAGGTTGGATAATCTGTG------------------------------------------------AAAT-TTTAGAAACTTGGTCAAAT---ATTAGTGAA-----A-------------------ACTCTAAAAAAAAAGTATAG-----------------------------------------------TAA----TTATCTGAAATATAAAAAAAAATGTAGTACAAAATTAATACAAATAATAATTTGGATTGGCTAATTTTGTAATTTTATAAAAAGAAACAATTCTAGTTTGTG--------------------------------GAT-----------------------------------------------------------------------------------------------------------------------TTTAA-TATTGAAAATGTGATAATTTTAGGAAAATTTATTATTAAAAAAAAACATTACACATATGATAAGTGAATTA---------------------------------------------AATAATAGTACTGAAAAAATAA-TA--ATCTTAAAAAAGTGTGAAAAATTTT-ATCT--------------------------------------------------------------------CT----------------------------------------------------------------------------------------TTAGGTTTTTACAACAAA------------------AAA--AGAATTC-GAAAAAATCGAATTGGAT-------------------------A-TTTACCTGT-------------------------------------------------------------------------------TTT---------------TTTC-----------------------------AAATA---------------A--------------------------ATTTAAAATTAAAATACAGTTTTT
droAna3 scaffold_13337:9451709-9452019 + TTCGTAAA--TACACAGAAAACAAA-ACAACACTTGG-----------------------AT---TATAA------------------------------------------------GTTA-ATTGGTAGCT--GCTTAAG---A-GTAAA----GGAT-TT----------------------------------------------------------------------------------TTTGTTATT------------------------------------------------------AAATCCTGTGTCTTTAATTTTAAT------------------------------------------------------------------------AAAG-----------------------------------------------------------------------------------TTTAAGTTTGTTTAGTGGTTTAATAT-----------------------------------------------------------------TACAAATAAATGTAAATGAAAT-AAAAT------------------------------------------------GTTTTTGT----------------GTTTA----AACTTTAAAAACATTAATGTATTTTTTCAAAACAGTATCTGGG--------------------------------------------------------------------------------------------------------------------------------AACACTTCTAAAGTTCTAAAAATATTAAAATTCCAAA-------------------------A----------------------------------------------------------TATATTGTTAATTTAAT----------TA----------------------------------TTGTTCAAACTTTTATTAC-----------------------------------------------T---ATTT--------------------TATGTTTTGA
droBip1 scf7180000396544:262667-262968 + GTTTTAAA--TACACAGAAAATAATAAAAAAAATCGG-----------------------AA---TATAAGCCAATCGGTAGCTGCTTTAAAATTAAAGATTTATTATTTTT---------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------AAATACTGGGTCTTTAATTTTATT------------------------------------------------------------------------TAAG-----------------------------------------------------------------------------------ATTACGTTTTTTGAGTGGTTCTGTAG-----------------------------------AATAAAAAAAA----------------------------------------TTAAGATTAGAATTCTGCAT----------------------------------------------------------------------------------------------------TATAATTTATAAATGTTTTT--------------------------------------------------------------GTTTAAATAAAAAAA-------------------------------------------------------------------GGATTTCCGAA-AAAGGATTTGAAGTTAAA---------------------GT------TCTCTTACGCCA------------------------------------------------------AAACTTTCTGTAACGTTT---------------------------------------------------------------------TTTTCAAAATATAT--------------GTTTTTATTTCAAAAC-TATTCT
dp5 XR_group3a:1310321-1310328 + TCCGTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_23:1341862-1341869 + TCCGTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCGCGGA--GGCACTGAGAGAAAA-CTAGTGCTCGT-----------------------AT---CGCTA------------------------------------------------GTAATTTCGGTAATTTTGCATAGA---A-AAAAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTAAAAT----AGA-----AGA-------------------AA-----------------------------------------------------------------------------ATATTTGTTA----------------------AAATAT------------------------------TCTAA-----------------------------------------------------------------TGCCAAAAACAATAGTGTTGGAAAC-CAAATA---AATAAATTTGAAAAATCAATGATAGTATTGAAAAAAA-TTAA--TTTTTTAA----------------TATTCC--------------------------------------------------------------------CCAAATTA-----------------------------------------------------------------------------------------------GGAAAA------------------AGAATGTCTTACTAA-TA---------AAA-------------------------TTTTTTTTCGT-------------------------------------------------------------------------------TTTTTAAGAAAATATTTTATAGACGTGATCGCAATTATTTATGG---------------------------TTTCCAAAATTTTA---AAAT--------------------TAAGTTTTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................TCGT-----------------------AT---CGCTA------------------------------------------------GTAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000010000000
TTCGCGGA--GGCACTGAGAGAAAA-CTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.............................................................T---CGCTA------------------------------------------------GTAATTTCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-------------------------------------------------------------------------------TTTTTAAGAAAAT.............................................................................................................1550.20100000000001000000
droSec2
TTCGCGGA--GGCACTGAGAGAAAA-CTATCGCTCGA-----------------------AT---CGCTG------------------------------------------------GTAA-TTCGGTAATTTTGCATAGC---A-AAGCGAG--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-------------------AA-----------------------------------------------------------------------------ATATTGGTTA----------------------AAATAT------------------------------TCGAA-----------------------------------------------------------------TGTCCAAAACAATAGTGTTGGAAAT-CAAGTG---AATCAATTTGAAAAATCCAGGATAGTATTGAAAAAAAATCAATTTTTTTGAA----------------TATTCC--------------------------------------------------------------------CAAAATTA-----------------------------------------------------------------------------------------------GAAAAT------------------AGATTGTTTAAAAAA-AA---------AAA---------------------------TATACTCGT-------------------------------------------------------------------------------TTTTTAAGAAAAGATTTTATAGA---------------------------------------------------CAAACATTTTT---AAAT--------------------TA--TTTTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTCGCGGA--GGCACTGAGAGAAAA-CTATCGCTCGA-----------------------AT---CGCTA------------------------------------------------GTAA-TTCGGTAATTTTGCTTAGC---A-AAGCGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAGAAAT----AGG---A-AGA-------------------AA-----------------------------------------------------------------------------ATATTTGTTA----------------------AAATAAAAAA------------------AATAGTTGTCTAA-----------------------------------------------------------------TGCCCAAAACAATAGTGTTGGAAAA-CAAATG---AACAAATTTGTAAAATCCAAGATAGTATTGAAGAAAAAAAGAATTTTTTAAA----------------TATTCC--------------------------------------------------------------------CT----------------------------------------------------------------------------------------TTGGAATTAGATAGGAAAT------------------AGATTGGATTACTAA-AAATTATATTAAAT---------------------------TATATTCGT-------------------------------------------------------------------------------TTT---------------ATAG-----------------------------ATACG---------------TTTCCAAAATTTTT---AAAT--------------------TAAGTTTTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..CGCGGA--GGCACTGAGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATCGCTCGA-----------------------AT---CGCTA------------------------------------------------GTAA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGAAAT------------------AGATTGGATTACT..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GACCAGAAAT----AGG---A-AGA-------------------AA-----------------------------------------------------------------------------ATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................AAGCGAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GACCAGAAAT----AGG---A-AGA-------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGTTGGAAAA-CAAATG---AACAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGAAGAAAAAAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTATCGCTCGA-----------------------AT---CGCTA------------------------------------------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...........................TATCGCTCGA-----------------------AT---CGCTA------------------------------------------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAA------------------AATAGTTGTCTAA-----------------------------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAAATCCAAGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGTGTTGGAAAA-CAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGTGTTGGAAAA-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATAGGAAAT------------------AGACG......................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................................GA-----------------------AT---CGCTA------------------------------------------------GTAA-TTCCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTCGCGGG--GGCACTGAGAGAAAA-CTGTCGCTCGA-----------------------AT---CGTTA------------------------------------------------GTAG-TTCGCTACTTTTGCATTGC---A-AAAAAG-ATGGGA-GC----------------------------------------------------------------------------------TCAATTATA------------------------------------------------------AGACTTTGTGGCACTGAAGT----AGA-----AGA-------------------GT-----------------------------------------------------------------------------GTATTTCTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTAAGTGAACAACTGAATTGGAAGAATATATTTCTAAATATTTAAATGACGAACTGAGTTCGAGGAAAATATTTCTAAATATTTAAATGACCA-------------------ACT----GAGTTCGAAGAAA---ATATTTCCAAA------------------------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------TTT---AAGTGACCAACTGA---ATTGGAAGAATATATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......GG--GGCACTGAGAGAAAA-CTGTCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................................A-----------------------AT---CGTTA------------------------------------------------GTAG-TTCGCTACTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
droYak3
TTCGCGGA--GGCACTGAGAGAAAA-CAGTCGGTCGA-----------------------AT---CGTTA------------------------------------------------GGAA-TTCGGTAATTTTGATTAGC---A-AAACAGG--GAGAAGTTTTAG-----------------------------------------------------------------------------CCTATAGTA------------------------------------------------------AAAACTTGTGGAACTAAAAT----AGA---A-AAA-------------------GA-----------------------------------------------------------------------------ATATTTGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTAAAATGCCCAACTGAAATAAAAGAAAATATTTATAAATTATAAAGTGACTAACTGAAATAGAAGAAAGTATTACTTAATATTTAAATGGCAA-------------------ACT----GAAATAGAAGCAA---AAATTTCGAAA------------------------------------------------------------------------------------TA-----------------------------------------------------------------------------------------------------------------------------TTT---AAAT------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGACTAACTGAAATAGAAGAAAGT.......................................................................................................................................................................................................................................................................................................................................2811.00100000010000
......................AAA-CAGTCGGTCGA-----------------------AT---CGTTA------------------------------------------------GGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAATATTTATAT........................................................................................................................................................................................................................................................................................................................................................................18200.05100000100000
droEug1
TTCGCGAA--GGCACTGAGAGAAAA--TATCAGTGGT-----------------------AT---TGGTA------------------------------------------------AAGT-TTCGGTAACTTTCGCTTGTTGTA-AA-AAAA--GAGAG-C-TTTGCTA--------------------------------------------------------------------------GCTA----TAATTTAAAGTTAAAAAAGATTTATAA----AACTCAATTCAA-------------------ATATTTTTTACTT-----TG-----AAA-------------------AACTGTTTAACCTTTTTAGTCTTATGGT-----------------------------------------------------------------------------------------------------------------------CTTAA-TTTGCAA---------------------------------------------------------GACC------AAAACTAAACGAAATTTAAATTAGAAATTTGTTTTAAAAAATAGAACAAATATTAAAAAACG-TTTA--TTTTTAAA----------------TGAGTT--------------------------------------------------------------------TTAAATCA-------------------------------------------------------------------------------------------AA-------------------TCGAATAAGATCAAATTTCTGAA------------------------------------------------------------------------------------TA--TTTTTTGTTTAA-------------------------------------------------------------------------------------------------------------------------------CTTTTTTATTATAATTT-CTTTCCSizeHit CountTotal NormTotal
No Reads
droBia1
TTCGCGGG--GGCACTGAGAGAAAA--TATCTGTGAA-----------------------AT---CGCTT------------------------------------------------GCCT-TTCGGTAA--------AGC---A-AA-CAAG--GAGAA-C-TGAGCATCTATTCAAACTGTGTAA--AAACTTTAATATTTTAAAATATTTTAAAAATCAGTGCTTGCAAAGTGGAATACTAATTATGGCA------------------------------------------------------TAAAACTATTTTTTTATTTTTATTATAC-AATAAAAACTGCTTAGTGGCAAACCAA-----------------------------------------------------------------------------ATATTTATAG----------------------TGTATATTAAAAGCTTCAATTTCTTTTTTGTAGAATTCCTA--T-----------------------------------AATAAAAAACA----------------------------------------TTAAAATAA------------------------------------------TA--TTTTTACA----------------AGTGTC--------------------------------------------------------------------CCAAAA-------------------------------------------------------------------------------------------------GAA----------------------------------------------------------------------------------------------------------------------AATTGTGTTTTTTGTTTAATTTGAAATAATTA---------------------------------TTTTTACAAGATCTTAATACTATAAGCCTTAAAGGAATGACTCTTATTTTCATAA--------------------------CTTAAAATC---------TAAAATSizeHit CountTotal NormTotal
No Reads
droTak1
AAATAT--------------------------------------------------------------------------------TTAAAAATTAAAAATGTATCATAGCATAAATAATAATCAAGGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTATACTTTTATTAGT-----AAA-------------------AA-----------------------------------------------------------------------------ATCTTTATCA----------------------TGATTATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGCTTTTTCAAATATCCCAAAAATTAGT----------------------------------------------------------------------------------------------------------------------------TTCATAAA-CT---------GGA-------------------------TTTTTTTTAAT------ACACATTTATTACAAATGTGGCAAAAACCGTGATTTTT-TTTAATAGTTAATAGTTA---------------------------------ATTA--------------------------------------------------CATATAAAATCTTA---AAA----------------------ATGTCTTAASizeHit CountTotal NormTotal
No Reads
droEle1
TTCGAGGA--GACACTGAAAGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTCGCCGA--GACACTGAGAGAAAA--TATCGGTAAC-----------------------AT---TGCTT------------------------------------------------ACAG-TTCGATGAGTTTTCAAATC---A-GTAAAG-AGTGTA-GT----------------------------------------------------------------------------------TCTATCGCT------------------------------------------------------GGTTTAAATTAAACTTAAAT----GGA-----AAA-------------------CACTTTTTAACACCCTAAATTTTAAGATTTTAAAATTTTACTGAAATATAATTTTAGAAGTTCAGATCTTTAGTTAAAGATTTTTAACACATATTATTAATATACAAGTGAAAATTTAAAA------------------ATCTGCTGT--------------------------------------------------------------------------------------------CT-CTAATA---AGTAATTTTGAAAAGTGTAAAGTAA--CTGATTATAAATAAAACTTTTTTGA----------------GATTACATTAATTTGGAAAGTGTTAAAGAAACTTTACAAATTATAATTTAGA--------------------------------------------------------------------------------------------------------------------------------AAT------------------TGTTGGTATTACTTA-AAATAAACTAGAGTTAAATTTAAAAATAAGTTATACATAAT------GCTTTACCAC--------------------------------------------------------AAATGTTGTATAA--------------------------------------------TAT---------------------------TTTGCAAAATTCATAAGAAAT--------------------TGTATTTTTASizeHit CountTotal NormTotal
No Reads
droFic1
TTCGCGGA--AGCACTGGGAGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A-CGCGGCAACGCACAGAAAGC--C-ATATCTCTGAAAAAATATTTAAGAAAAAGGTTGGATAATCTGTG------------------------------------------------AAAT-TTTAGAAACTTGGTCAAAT---ATTAGTGAA-----A-------------------ACTCTAAAAAAAAAGTATAG-----------------------------------------------TAA----TTATCTGAAATATAAAAAAAAATGTAGTACAAAATTAATACAAATAATAATTTGGATTGGCTAATTTTGTAATTTTATAAAAAGAAACAATTCTAGTTTGTG--------------------------------GAT-----------------------------------------------------------------------------------------------------------------------TTTAA-TATTGAAAATGTGATAATTTTAGGAAAATTTATTATTAAAAAAAAACATTACACATATGATAAGTGAATTA---------------------------------------------AATAATAGTACTGAAAAAATAA-TA--ATCTTAAAAAAGTGTGAAAAATTTT-ATCT--------------------------------------------------------------------CT----------------------------------------------------------------------------------------TTAGGTTTTTACAACAAA------------------AAA--AGAATTC-GAAAAAATCGAATTGGAT-------------------------A-TTTACCTGT-------------------------------------------------------------------------------TTT---------------TTTC-----------------------------AAATA---------------A--------------------------ATTTAAAATTAAAATACAGTTTTTSizeHit CountTotal NormTotal
No Reads
droAna3
TTCGTAAA--TACACAGAAAACAAA-ACAACACTTGG-----------------------AT---TATAA------------------------------------------------GTTA-ATTGGTAGCT--GCTTAAG---A-GTAAA----GGAT-TT----------------------------------------------------------------------------------TTTGTTATT------------------------------------------------------AAATCCTGTGTCTTTAATTTTAAT------------------------------------------------------------------------AAAG-----------------------------------------------------------------------------------TTTAAGTTTGTTTAGTGGTTTAATAT-----------------------------------------------------------------TACAAATAAATGTAAATGAAAT-AAAAT------------------------------------------------GTTTTTGT----------------GTTTA----AACTTTAAAAACATTAATGTATTTTTTCAAAACAGTATCTGGG--------------------------------------------------------------------------------------------------------------------------------AACACTTCTAAAGTTCTAAAAATATTAAAATTCCAAA-------------------------A----------------------------------------------------------TATATTGTTAATTTAAT----------TA----------------------------------TTGTTCAAACTTTTATTAC-----------------------------------------------T---ATTT--------------------TATGTTTTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GTTTTAAA--TACACAGAAAATAATAAAAAAAATCGG-----------------------AA---TATAAGCCAATCGGTAGCTGCTTTAAAATTAAAGATTTATTATTTTT---------------------------------------------------------------------------------------------------------------------------------------------G------------------------------------------------------AAATACTGGGTCTTTAATTTTATT------------------------------------------------------------------------TAAG-----------------------------------------------------------------------------------ATTACGTTTTTTGAGTGGTTCTGTAG-----------------------------------AATAAAAAAAA----------------------------------------TTAAGATTAGAATTCTGCAT----------------------------------------------------------------------------------------------------TATAATTTATAAATGTTTTT--------------------------------------------------------------GTTTAAATAAAAAAA-------------------------------------------------------------------GGATTTCCGAA-AAAGGATTTGAAGTTAAA---------------------GT------TCTCTTACGCCA------------------------------------------------------AAACTTTCTGTAACGTTT---------------------------------------------------------------------TTTTCAAAATATAT--------------GTTTTTATTTCAAAAC-TATTCTSizeHit CountTotal NormTotal
No Reads
dp5
TCCGTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCCGTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 09:44 AM