ID:

dsi_3656

 Coordinate:

x:6102426-6102712 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.5 -23.4 -23.1

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_3656  x:6102582-6102599 +
  2. node_2529:158-175 +
star
  1. 2l:5780855-5780869 -
  2. 2l:8289217-8289231 -
  3. 2r:19799418-19799432 +
  4. dsi_3656  x:6102677-6102691 +
  5. node_46513:147-161 +
  6. node_30781:123-137 -
  7. node_94599:15-29 -
  8. node_47341:551-565 -
  9. node_79538:582-596 -

Sense Strand Reads

GATGTTTAGTGATTTCCAGCTGTGTGTGGTGCTGTGTGAATATTGAGAAGGTGAAACATTGGTGTTTTTTGGCATCGCTGTTGTTTTTTCGTAGCACACTTACCGCTATAATAATAACGTGCTTCCTTCCTTGTCTGGCCGATTTTTCGGTGCCGCCACCTCTGCCGTCGCGTCGCGTGCAGAAAAAGTAAGCGCAGAATTAAACGTACACTTTTAGTGGCATTGTTGTTGTTTTGGTCCGTTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGAAACACACAAATTCAAAACTCAAAATCAAATCGGCAAAAAGAGTAGACATAATAAAAAAGTATATATACCTATATATAAATACAGGGAAACAAAAGAAATCTAATGCC
**************************************************************************************************************************************************************************************************************..((((...))))......((((((.((((((.......(((((...)))))((((((.((((..((....))..)))).))))))...........)))))).))))))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
..........GATTTCCAGCTGTGCACGGTGCT.................................................................................................................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0
.....................GTGTGTGGTGCTGTGTGAATATT....................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
................................TGTGTGAATATTGAG.................................................................................................................................................................................................................................................................................................................................................... 15 0 11 0.64 7 5 0 0 1 1
............................................................................................................................................................................................................................................................................................................AAAATCAAATCGGCAATAAAA.................................................................. 21 2 2 0.50 1 0 0 1 0 0
..............................................................................................................................................................................................................TACACTTTTAGTGGCATT................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0 0
....................................................................................................................................................................................................................TATAGTTGCATTGTTGTTGTT.......................................................................................................................................................... 21 2 3 0.33 1 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................CAAATCAAATCGGCAAAA..................................................................... 18 1 4 0.25 1 0 0 0 0 1
..........................................................................................................................TTTCTTCCTTGTCTCGCCGTTT................................................................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................................AAATCAAATCGGCAA....................................................................... 15 0 9 0.11 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................AAATCAAATCGGCAATAA.................................................................... 18 1 11 0.09 1 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................................................................ATAAATACTGGGAAAAAAAAGC........... 22 3 17 0.06 1 1 0 0 0 0

Anti-sense strand reads

CTACAAATCACTAAAGGTCGACACACACCACGACACACTTATAACTCTTCCACTTTGTAACCACAAAAAACCGTAGCGACAACAAAAAAGCATCGTGTGAATGGCGATATTATTATTGCACGAAGGAAGGAACAGACCGGCTAAAAAGCCACGGCGGTGGAGACGGCAGCGCAGCGCACGTCTTTTTCATTCGCGTCTTAATTTGCATGTGAAAATCACCGTAACAACAACAAAACCAGGCAATCCCACCGTTGGTAGCTAAACGCACAGCGCGTCGGCTTTGTGTGTTTAAGTTTTGAGTTTTAGTTTAGCCGTTTTTCTCATCTGTATTATTTTTTCATATATATGGATATATATTTATGTCCCTTTGTTTTCTTTAGATTACGG
***********************************************************************..((((...))))......((((((.((((((.......(((((...)))))((((((.((((..((....))..)))).))))))...........)))))).))))))************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M023
head
..............................................................................................................................................................GGAGACGGCTACCCAGCGCAC................................................................................................................................................................................................................ 21 3 1 1.00 1 0 1 0 0 0
.........................................................................................TCTTGGTGTGAATGGCGATAT..................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0
....................................................................AACCGTCGCCACAACAAAAA........................................................................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0
...CAAAACTCTAAAGGTCGAC............................................................................................................................................................................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 1
........................................................................................................................................................................................................................................................................................TTGTGTGTTTAAGTT............................................................................................ 15 0 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................TTGTGTGTTTAAGTTT........................................................................................... 16 0 4 0.25 1 1 0 0 0 0
.........................................................................................GCATTGTGCGAATGCCGAT....................................................................................................................................................................................................................................................................................... 19 3 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................TTGTGTGTTTAAGTTTT.......................................................................................... 17 0 4 0.25 1 1 0 0 0 0
............................................................................................TTGTGTGAATGGAAATATTAT.................................................................................................................................................................................................................................................................................. 21 3 8 0.13 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................CGTTTATCTCATCTG............................................................ 15 1 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:6102376-6102762 + dsi_3656 GATGTTTAGTGA---T---------------TTC----C-----AGCTGTGT------GT-----------GGTGCTGT--------------------GTG----AA-TATTGAGAAGG-TG-------------------------------------A------------------AACATTG-----GTGTTTT--T-TGGCATCGCTGTTGTTTT--T--TCG-----------------------------TAGCACACTTACCGCTAT-AATAATAACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------CCACCTCTGCCGT-------------CG--CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTAAACGTACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACACA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATA--ATAAA--AAAGTATATATACCTATA--------TATAAATA----CAGGGA--AACAAAAGAAATCTAATGCC--------
droSec2 scaffold_4:304408-304801 - GGTGTTTAGTGA---T---------------TTC----C-----AGCTGTGT------GT-----------GGTGCTGT--------------------GTG----AA-TATTGAGAAGG-TG--------------------------------------------------------AACATTG-----GTGTTTT--T-TGGCATCGCTGTTGTTTT--T-TTCG-----------------------------TAGCACACTTACCGCTAT-AATAATAACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------CCACCTCTGCCGT-------------CG--CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTAAACGTACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAGA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATA--ATAAA---AAGTATATATATCTATATATATATATATAAATA----CAGGGA--AACAAAAGAAATCTAATGCC--------
dm3 chrX:6496573-6496950 + GGCGTTTAGTGA---T---------------TTC----A-----ACCTGTGT------GT-----------GGTGCTTT--------------------GTG----AA-TTTTC-CAAGG-----------------------------------------------------------AATATTG-----GTGTATT--T-TGGCATCGCTGTCGTTTTTTTTTTTG-----------------------------TAGCACACTTACCGTTAT-AATAATAACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------CCACCTCTGCCACC------------AT--CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAACGTACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAGA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATA--ATAAAAAAAAGTATATAT--------------------ATA----CAGGGA--AACAAAAGAAATCTAATGCC--------
droEre2 scaffold_4690:15427398-15427777 + GGTGTTTAGTGA---T---------------TTC----C-----AGCTGTGT------GC----------------TCGGCGT---------GCTTCAAGTGAATGAA-TATTAAGAAGGGTA-------------------------------------A------------------AAGATTG-----GTGT--T--T-TTGCATCGCTGTTGTTTT-----TTG-----------------------------TAGCACACTTACCGCTAT-AATAATAACGA----GCTTCCTTGTC--------------------------------------------TGG---CCGATACCGA-------------TT-TTCGGTACC---G-----------------------------------------------C---CTCTGCCGT-----------------CATCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAACGTACATTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAGA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATACAATA-----------------CTATATACA------TATATA----CAGGGA--AACAAAAGAAATCTAATGCC--------
droYak3 X:2463398-2463757 + GGTGTTTGGTGA---T---------------TTC----C-----AGCTGTGT------GT----------------------------------TTCAAGTG----AA-TATTAAGAAGG-GA-------------------------------------A------------------AACATTG-----GTGT--T--T-TTGCATCGCTGTTGTTTA-------G---------CACACTGTGTAGC-----TATAGCACACTTACCGCTAT-AATAATAACGT----GCTTCCTCGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTACC---G-----------------------------------------------C---CTCTGCCGT-----------------CGTCGCGTGCAG-AAAAAGTAA-----------------------AAAGTAAGCGCAGAATTTAACGTACATTT--AAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCTG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAAA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACA-------------------------------------------TA----CAGGGA--AACAAAAGAAATCTAATGCC--------
droEug1 scf7180000409522:166889-167246 + GA-GTG--------------------------------CATATGTGTGGTGT------GTGTGT-------GGTG-----TGTTTTTGGTGTGTTTGCAGTG----AA-TAT---GA------AAAT----------AAA--------------------A---------AAA--A---AA------------------------CATTGCTGTTATTTT-----TTG-----------------------------TAGCACACTTACCGTTAT-AATAATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------C---CTCTCCCGT-----------------CGTCGCGTGCAG-AAAA------------------------------CGTAAGCGCAGAATTTAACGT----TT-TTAGT------G------------CTTTTT----TCGTTGGTTTTTTTGTTT----------------------------------AGTTAT---------------------------------------------------TATTGTTGTTGTTG-TTTTT-------------GTGATCCG------TTAGGGTGGCAACCATTGATTTGCGTGTCGCGCAGTTAA--AA--------------------------C-ACAGA--AATTCAAA------AATCAAAATCAAA--------------------------------------------------------------------CAGGGAAAAACAAAGGAAATCAAATGCC--------
droBia1 scf7180000301760:2907913-2908187 - TGTGTGT--------------------------------------GCTGTGT------GT-----------G---CTGTGTGTGC--------GGCCAAGTG----AG-----------------------------------------------------------------------------------------------------------------------------------------------------T---------AGCGCTG-------CAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT--TCGG-GCC---G-----------------------------------------------C---CTCTGCCGC-----------------CGTCGCGTGCAG-GAAAAGTGGCAGAAAGGCGCAGAAAGGCGCAGA---AAGGCGCAGAATTCCACGTAAGTT---CAGA------G----------------------------------------------------------------------------C------------------------------------------------------CATTGTTGCT---G--------------------CGGCCCG------CT-GGGTGGCAACCATCGATTCGCGTGTCGCGCAGCCAA--AA--------------------------C-AGCGA--AGCTCGAA------AACC-AAATCGAA--------------------------------------------------------------------C-GGAA--GACCAGGGAAATCAAATGCC--------
droTak1 scf7180000414549:104462-104776 + G-TATTTAT----------------------------------------TAT------GT-----------GATG--------------------TGAAGTG----AA-TAT-AAGA------GAAAA--------------------------------AAATAGTAACCAA------AACATTG-----------------------GCTGTTATTTT-----TCG-----------------------------TAGCACACTTACCGCTAT-A---ATAACGT----GCTTCCTTGTC--------------------------------------------TGGATTCCCAT------------------TT-TTT--------------------------------------------------------------TCTCTT---------------TC--CATCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAGCGTAAATTT-TTAGT------G----------------------------------------------------------------------------T------------------------------------------------------TATTTTTGTTATTG-TTT----------------TGGCCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGGAGTTAA--AAAAAAAACAA--------AAAAAATAAC-ACACA--AATTCAAA------AATCAAAATC------------------------------------------------------------------------GGGGA--AACAAAAGAAATCAAATGCC--------
droEle1 scf7180000491044:381633-381954 + AGTGTTT-GTGA--------------------------------------GT------GT----------------TTTGTGT-------------GAATTG----AA-TTTTGCGA------CAAT----------AA---------------------A------------------TACATTA-----CTTT-TT--G-TTGCCTAGTTGTTATTTT--TTATTG-----------------------------TAGCACACTTTTTGCTAT-A---ATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TTTTTCGGTACC---G-----------------------------------------------C---CTCTGCCTT-----------------CGTCGCGTGCAG-AAAA------------------------------AGTAAGTGCAGAATTTAACGTACATTT-TCAGCTATTCAG----------------------------------------------------------------------------T------------------------------------------------------TATTGTTGTT---G-TTT----------------TGGTCCG------TGAGGGTGGCAACCATCGATTTGCGTGTCGCGCGGCCAA--AA--------------------------C-ACAGA--AATTCAAA------AATCAAAATCACATC--------------------------------------------------------------------GGGA--AACAAAAGAAATCAAATGCC--------
droRho1 scf7180000776942:63780-64102 + GGTGTGT-G----------------------------------------TGT------G-----------------------TGA--------ATTCAAGTG----AA-TTTTGCGA------CAAT----------AA---------------------A------------------AACATTG-----TTT-ATT--T-TCGCATAGCTGTTGGTTT--T--TTG-----------------------------TAGCACACTTAGCGCTAT-A---ATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTACC---G-----------------------------------------------C---CTCTGCCTT-----------------CGTCGCGTGCA----------------------------------------------GAATTTACCGTAAGTTT-TTGGC------G----------------------------------------------------------------------------T------------------------------------------------------TATTGTTGCT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCAA--AA--------------------------C-ACAGA--AATCCAAA------AATCCAAATCAAATCGGCAAAGAAAACACAAAAA--ATAAA---------------------------------A----AACGGGGA--AACAAAAGAAATCAAATGCC--------
droFic1 scf7180000454072:915372-915726 - TGTGTG--------------------------------C-----TGCTGTGT------GTGT----------GTGTTGTGTGT---------GTTTTAAGTG----AT-GTCCGCGA------CAAT----------AA---------------------A------------------AACATTG-----GTT--TT--T-TGGCATCGCCGTCGTTTT-----TCG-----------------------------TAGCACACTTACCGCTAT-AAT-ATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTACC---G-----------------------------------------------C---CTATGCCGT-----------------CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAGCGTAGTTTT-TTAGT------G----------------------------------------------------------------------------T------------------------------------------------------TATTGTTGCT---G-TTTTT--------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGACAAAAAA--------------------------C-ACAGA--AATTTAAA------AATCAAAATCAAATCGGCAAACAGAG-AGAAA-A--ACAA----------------------------------A----AACGGGGA--AACAAAAGAAATCAAATGCC--------
droKik1 scf7180000302367:29711-30122 - ATTGTGCTG-----------------------------------TGCTGTGT------GTGTGT----------G---TGTGTGTGT-GTGTGTGTGTAGTG----CG----TGAGAGAG-TGCAAA---------------------------------AAACGGTTACCG---------CCTTG-----------------------G------A-------------------------------------------TATTGGTACCGTTATTGGTAATAACGAACGTGCTTCCTTGTC--------------------------------------------TGGGC-TCGAAAAAAAAATTCGCTGCTGTTT-TTC------------------------------------------------------------------------------------G--GGTCGCGTGCAG-AAAA----------------------------AAAGTAAGCGCAGAATTTAACGTAAATTT--CAGA------GTGTTTTTTTGTGTAGTTTTTCTCCTTTTTTGTT---------------------------------------------------------------------------------------------------TTTGTTATT---G-CTTACTGACTGACTGTTT-TC-TCCGGTTTAAGGAGGGTGGCAACCATCGATTTGCGTGTCGCGCTGCCGAA-AA--------------------------C-ACTGAAAAATCCCAA------AATCAAAATCAAATCATCAACACAA-TGGCGAAA-------AAAAAA----------------------TATAAATA----AAAATA--AACAAAAGAAATCAAATGCC--------
droAna3 scaffold_12929:3066376-3066760 + GAAGTGT-GTGTATATTTCTTAAATATTTTTTTT----C-----GGCTGATT------GT------TTTGTGGTTTTCT--------------------GTG----AA-CTTTGCGA------CAAAAGCTGAAAAGCAA--------------------C---------AAA--A---AG-------------------C-TGGCACCGTTGGCGTTTT-------T-----------------------------TAGCACATTTACCGCTAT-A-TAATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAAA-----------------TT-TGCAATTT-----------------------------------------------TTTTTCCACTTTTTTTTA------A------AGCAAGTCGCGTGCAG-A-AA------------------------------AGTAAGCGCAGAATTTAACGTAAGTTT---ATT------G-----TTTATTGTAGTTTTTTTTTTTA------------------------------------------------------------------------------------------------------------------------TT----------------TTTTTTA------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGAAAA--AA--AAAACCAAAAACCAACAACAATAGTAACCGA--AACTC------------CGAAATCGAATC--------------------------------------------------------------------GGGA--AACAAAAGAAATCAAATGCC--------
droBip1 scf7180000396036:671-980 - G-TGAG--------------------------------------TGAAGTGT------AAGATTGTTTTGTGGTTTTCT--------------------GTG----AACTTTTGCGA------CAACA---AAACAACAA--------------------C---------AAAA-A---AG-------------------C-TGGCACCGTTGGCGTTTT-------T-----------------------------TAGCACATTTACCGCTAT-A-TAATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAAA-----------------TT-TTCATTTT----T-----------------------------------------------T---TTTTTTC----------------GCAAGTCGCGTGCA----------------------------------------------GAATTTAACGTAAGTTT---ATT------G----------------------------------------------------------------------------T------------------------------------------------------T---TCTTTT---T-TTT----------------TTTTTTA------TTAGGGTGGCAACCATCGATTTGCGTGTCGCTCAGAAAA--AACAACAACAA--------CAACAAT-----------AATCCAAACTTTAACTCCAAA-----AT-------------------------------------------------------------------CGGGGA--AACAAAAGAAA-------CC--------
dp5 XL_group1a:297656-298117 + TATTTTT-----------CTGCCATGTGTTTT-TTTTC------------TT------GT-----------GCTG--------------------TGGTGTG----AA-TG----GG------CAAT----------AACAGACTCTGACTGCGCTGCAAC---------TACTCCTCCAG-----CTCAAGTTTTCTAC-----A------GTT---TT---TTTTG---------CAC-------------------ATACATATACCGTTTT-A---ATAACGTGCT-GGTTCCCTGTC--------------------------------------------TGGTGTCCGAA------------------TT--ACGGAGCCACTGCCGACGCTGTCAGTGTCGCACTCGCTGTTTCTACGGC-------TGC-CACCGCAGCCACCTCTGTCGCTGTTCG--GGTCGCGTGCAG-A-AA------------------------------AGTAAGCGCAGAATAAACCATACAAATATTAGT------G------------CAGTTTTTTTTCTTCTCTGTATGTGTGTGTGTGTGTGTG----------T-GTGTGTGC-ATGGTG---------------------------------------------------------------TGTGC-G----------------T-----------ATGGAGGGTGGCAACCATCGATTTGCGTGTCGCTCAGCCAA--AA--------------------------C-ACAGCCGCATTCAAA------AATCTAAATCGAATCA---AAG-------------------------------------------------------CTAACGGGAA--CACAAAAGAAATCAAATGCC--------
droPer2 scaffold_26:370335-370798 - TGC-------------------CATGTGTTTT-TTTTC------------TT------GT-----------GCTG--------------------TGGTGTG----AA-TG----GG------CAAT----------AACAGACTCTGACTGCGCTGCAAC---------TACTCCTCCAG-----CTCAAGTTTTCTAC-----A------GTT---TT---TTTTG---------CAC-------------------ATACATATACCGTTTT-A---ATAACGTGCT-GGTTCCCTGTC--------------------------------------------TGGTGTCCGAA------------------TT--ACGGAGCCACTGCCGACGCTGTCAGTGTCGCACTCGCTGTTTCTACGGC-------TGC-CACCGCAGCCACCTCTGTCGCTGCTCG--GGTCGCGTGCAG-A-AA------------------------------AGTAAGCGCAGAATAAACCATACAAATATTAGT------G------------CAGTTTTTTTTCTTCTCTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT-GTGTGTGC-ATGGTG---------------------------------------------------------------TGTGC-G----------------T-----------ATGGAGGGTGGCAACCATCGATTTGCGTGTCGCTCAGCCAA--AA--------------------------C-ACAGCCGCATTCAAA------AATCTAAATCGAATCA---AAG-------------------------------------------------------CTAACGGGAA--CACAAAAGAAATCAAATGCC--------
droVir3 scaffold_12928:5792784-5793073 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCACATTTACCGTTAT-A---ATAACGT----GCTTCCTTGTCGTTGAACGTCTGTTTTCGTTTGTTTGTGTGCGTTTTCATCTGTTTGC---GCGAT------------------TT-TTCGG-----------------------------------------------------------------------------CGTTTG--CGTCGCGTGCAG-CAAA------------------------------AGTAAGCGCAGAATTTAACGTAATTTT---CGT-----------------------------------------------------------------------------CGATAGTTTTTGCAGCTGTTGTTGTTGTCGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTG-TT----------------G-----T------TGTAGGGTGGCAACCATCGATTTGCGTGTCGTGCAGTCAA--A---------------------------C---------------------------AAATCAAA--------------------------------------------------------------------------------------------TGGAAAACGCGA
droMoj3 scaffold_6359:4301223-4301400 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAT------------------TT-TTCGT-----------------------------------------------------------------------------CGTCTG--CGTCGCGTGCAA-C-AA------------------------------AGTAAGCGCAGAATTTAACGTAATTCC--------------------------------TTTTCTTTTTTTTTTTTATATATGTATATATT----------TTTTATATTCGATAGTT---------------------------------------------------------------GTTGC-T----------------G-----------TTATAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGTCAA--A---------------------------C---------------------------AAATCAAA--------------------------------------------------------------------------------------------TGGAAAACGCGA
droGri2 scaffold_14853:4925569-4925966 + GTTGTTTCGTGT---T---------------TTC----T-----TCCTATATATATATAT-----------ATTTATTT----------------------------------------------------------------------------TTTAAT---------TTTTCTTCGAG-----TGTGTGTGTTTTTTGTTGCTGTTGTTGTTGTTTT--T--TCGTCACTTTAGCGAAAC--GTATCCAAAATTTAGCACATTTACCGTTAT-A---ATAACGT----GCTTCCTTGTCGATAGAC---------------------------------------G---TCGG-------------------CT-TTTGTTATT---GTTGCTGCTGTTATTGTTGTTCATTTTTCGATTTTGGCAATTTTTTTT-TGTTGTATCT-TTTTTTTTGGCGTCTG--CGTTGCGTGCAGCAAAA------------------------------AGTTAGTGCAGAATTCAACGTAAGTTT---AGT------T----------------------------------------------------------------------CGATAGTTATTGC------------------------------------------------TGTTGTCGTTGTTG-TT----------------G-----T------TGCAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGTCAA--A--------------------------------------------------------------------------------------------------------------------------------------------------CAAATCAAATGCTAAACGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATGTTTAGTGA---T---------------TTC----C-----AGCTGTGT------GT-----------GGTGCTGT--------------------GTG----AA-TATTGAGAAGG-TG-------------------------------------A------------------AACATTG-----GTGTTTT--T-TGGCATCGCTGTTGTTTT--T--TCG-----------------------------TAGCACACTTACCGCTAT-AATAATAACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------CCACCTCTGCCGT-------------CG--CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTAAACGTACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACACA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATA--ATAAA--AAAGTATATATACCTATA--------TATAAATA----CAGGGA--AACAAAAGAAATCTAATGCC--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................GTGT------GT-----------GGTGCTGT--------------------GTG----AA-TATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
............................................................................TGT--------------------GTG----AA-TATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15110.64700000011005000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATT............................................................................................................................................................................................................................................................1820.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAAATCGGCAA.................................................................................................1590.11100000000001000000
droSec2
GGTGTTTAGTGA---T---------------TTC----C-----AGCTGTGT------GT-----------GGTGCTGT--------------------GTG----AA-TATTGAGAAGG-TG--------------------------------------------------------AACATTG-----GTGTTTT--T-TGGCATCGCTGTTGTTTT--T-TTCG-----------------------------TAGCACACTTACCGCTAT-AATAATAACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------CCACCTCTGCCGT-------------CG--CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTAAACGTACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAGA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATA--ATAAA---AAGTATATATATCTATATATATATATATAAATA----CAGGGA--AACAAAAGAAATCTAATGCC--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---G-TTT----------------TGGTCCG------TTAGGGTGGC.......................................................................................................................................................................................................2211.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-T................................................................................................................................................................................................................................................2511.0010010
dm3
GGCGTTTAGTGA---T---------------TTC----A-----ACCTGTGT------GT-----------GGTGCTTT--------------------GTG----AA-TTTTC-CAAGG-----------------------------------------------------------AATATTG-----GTGTATT--T-TGGCATCGCTGTCGTTTTTTTTTTTG-----------------------------TAGCACACTTACCGTTAT-AATAATAACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------CCACCTCTGCCACC------------AT--CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAACGTACACTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAGA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATA--ATAAAAAAAAGTATATAT--------------------ATA----CAGGGA--AACAAAAGAAATCTAATGCC--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................TTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTAGTGA---T---------------TTC----A-----ACCTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------T.............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT---G-TTT----------------TGGTCCG------TTAGGGTGG........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AACGTGCTTCCTTCCTTGTC--------------------------------------------TGG---CC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................TATTG-----GTGTATT--T-TGGCATCGCTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTTGCGTGTCGCGCAGC.............................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TCCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCAAAAAGAGTAGACATA--ATAAAAA..........................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................A-----ACCTGTGT------GT-----------GGTGCTTT--------------------GTG----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAAAAGAGTAGACATA--.................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTC.........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GGTGCTTT--------------------GTG----AA-TTTTC-CAAGG-----------------------------------------------------------AAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AATTCAAA------ACTCAAAATCAAATC......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................T-TGGCATCGCTGTCGTTTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droEre2
GGTGTTTAGTGA---T---------------TTC----C-----AGCTGTGT------GC----------------TCGGCGT---------GCTTCAAGTGAATGAA-TATTAAGAAGGGTA-------------------------------------A------------------AAGATTG-----GTGT--T--T-TTGCATCGCTGTTGTTTT-----TTG-----------------------------TAGCACACTTACCGCTAT-AATAATAACGA----GCTTCCTTGTC--------------------------------------------TGG---CCGATACCGA-------------TT-TTCGGTACC---G-----------------------------------------------C---CTCTGCCGT-----------------CATCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAACGTACATTT-TTAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAGA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACATACAATA-----------------CTATATACA------TATATA----CAGGGA--AACAAAAGAAATCTAATGCC--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GGTGTTTGGTGA---T---------------TTC----C-----AGCTGTGT------GT----------------------------------TTCAAGTG----AA-TATTAAGAAGG-GA-------------------------------------A------------------AACATTG-----GTGT--T--T-TTGCATCGCTGTTGTTTA-------G---------CACACTGTGTAGC-----TATAGCACACTTACCGCTAT-AATAATAACGT----GCTTCCTCGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTACC---G-----------------------------------------------C---CTCTGCCGT-----------------CGTCGCGTGCAG-AAAAAGTAA-----------------------AAAGTAAGCGCAGAATTTAACGTACATTT--AAGT------G----------------------------------------------------------------------------G------------------------------------------------------CATTGTTGTT---G-TTT----------------TGGTCTG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCGA--AA--------------------------C-ACAAA--AATTCAAA------ACTCAAAATCAAATCGGCAAAAAGAGTAGACA-------------------------------------------TA----CAGGGA--AACAAAAGAAATCTAATGCC--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................T--T--T-TTGCATCGCTGTTGTTTA-------G---------CACACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTG------TTAGGGTGGCAACCATCGATTTGC.........................................................................................................................................................................................2711.00100100000000
......................................................................................................................................................................................................................TGTTTA-------G---------CACACTGTGTAGC-----TAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................GTTTA-------G---------CACACTGTGTAGC-----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
GA-GTG--------------------------------CATATGTGTGGTGT------GTGTGT-------GGTG-----TGTTTTTGGTGTGTTTGCAGTG----AA-TAT---GA------AAAT----------AAA--------------------A---------AAA--A---AA------------------------CATTGCTGTTATTTT-----TTG-----------------------------TAGCACACTTACCGTTAT-AATAATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTGCC---G-----------------------------------------------C---CTCTCCCGT-----------------CGTCGCGTGCAG-AAAA------------------------------CGTAAGCGCAGAATTTAACGT----TT-TTAGT------G------------CTTTTT----TCGTTGGTTTTTTTGTTT----------------------------------AGTTAT---------------------------------------------------TATTGTTGTTGTTG-TTTTT-------------GTGATCCG------TTAGGGTGGCAACCATTGATTTGCGTGTCGCGCAGTTAA--AA--------------------------C-ACAGA--AATTCAAA------AATCAAAATCAAA--------------------------------------------------------------------CAGGGAAAAACAAAGGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droBia1
TGTGTGT--------------------------------------GCTGTGT------GT-----------G---CTGTGTGTGC--------GGCCAAGTG----AG-----------------------------------------------------------------------------------------------------------------------------------------------------T---------AGCGCTG-------CAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT--TCGG-GCC---G-----------------------------------------------C---CTCTGCCGC-----------------CGTCGCGTGCAG-GAAAAGTGGCAGAAAGGCGCAGAAAGGCGCAGA---AAGGCGCAGAATTCCACGTAAGTT---CAGA------G----------------------------------------------------------------------------C------------------------------------------------------CATTGTTGCT---G--------------------CGGCCCG------CT-GGGTGGCAACCATCGATTCGCGTGTCGCGCAGCCAA--AA--------------------------C-AGCGA--AGCTCGAA------AACC-AAATCGAA--------------------------------------------------------------------C-GGAA--GACCAGGGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droTak1
G-TATTTAT----------------------------------------TAT------GT-----------GATG--------------------TGAAGTG----AA-TAT-AAGA------GAAAA--------------------------------AAATAGTAACCAA------AACATTG-----------------------GCTGTTATTTT-----TCG-----------------------------TAGCACACTTACCGCTAT-A---ATAACGT----GCTTCCTTGTC--------------------------------------------TGGATTCCCAT------------------TT-TTT--------------------------------------------------------------TCTCTT---------------TC--CATCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAGCGTAAATTT-TTAGT------G----------------------------------------------------------------------------T------------------------------------------------------TATTTTTGTTATTG-TTT----------------TGGCCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGGAGTTAA--AAAAAAAACAA--------AAAAAATAAC-ACACA--AATTCAAA------AATCAAAATC------------------------------------------------------------------------GGGGA--AACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droEle1
AGTGTTT-GTGA--------------------------------------GT------GT----------------TTTGTGT-------------GAATTG----AA-TTTTGCGA------CAAT----------AA---------------------A------------------TACATTA-----CTTT-TT--G-TTGCCTAGTTGTTATTTT--TTATTG-----------------------------TAGCACACTTTTTGCTAT-A---ATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TTTTTCGGTACC---G-----------------------------------------------C---CTCTGCCTT-----------------CGTCGCGTGCAG-AAAA------------------------------AGTAAGTGCAGAATTTAACGTACATTT-TCAGCTATTCAG----------------------------------------------------------------------------T------------------------------------------------------TATTGTTGTT---G-TTT----------------TGGTCCG------TGAGGGTGGCAACCATCGATTTGCGTGTCGCGCGGCCAA--AA--------------------------C-ACAGA--AATTCAAA------AATCAAAATCACATC--------------------------------------------------------------------GGGA--AACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droRho1
GGTGTGT-G----------------------------------------TGT------G-----------------------TGA--------ATTCAAGTG----AA-TTTTGCGA------CAAT----------AA---------------------A------------------AACATTG-----TTT-ATT--T-TCGCATAGCTGTTGGTTT--T--TTG-----------------------------TAGCACACTTAGCGCTAT-A---ATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTACC---G-----------------------------------------------C---CTCTGCCTT-----------------CGTCGCGTGCA----------------------------------------------GAATTTACCGTAAGTTT-TTGGC------G----------------------------------------------------------------------------T------------------------------------------------------TATTGTTGCT---G-TTT----------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGCCAA--AA--------------------------C-ACAGA--AATCCAAA------AATCCAAATCAAATCGGCAAAGAAAACACAAAAA--ATAAA---------------------------------A----AACGGGGA--AACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droFic1
TGTGTG--------------------------------C-----TGCTGTGT------GTGT----------GTGTTGTGTGT---------GTTTTAAGTG----AT-GTCCGCGA------CAAT----------AA---------------------A------------------AACATTG-----GTT--TT--T-TGGCATCGCCGTCGTTTT-----TCG-----------------------------TAGCACACTTACCGCTAT-AAT-ATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAT------------------TT-TTCGGTACC---G-----------------------------------------------C---CTATGCCGT-----------------CGTCGCGTGCAG-AAAA------------------------------AGTAAGCGCAGAATTTAGCGTAGTTTT-TTAGT------G----------------------------------------------------------------------------T------------------------------------------------------TATTGTTGCT---G-TTTTT--------------TGGTCCG------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGACAAAAAA--------------------------C-ACAGA--AATTTAAA------AATCAAAATCAAATCGGCAAACAGAG-AGAAA-A--ACAA----------------------------------A----AACGGGGA--AACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droKik1
ATTGTGCTG-----------------------------------TGCTGTGT------GTGTGT----------G---TGTGTGTGT-GTGTGTGTGTAGTG----CG----TGAGAGAG-TGCAAA---------------------------------AAACGGTTACCG---------CCTTG-----------------------G------A-------------------------------------------TATTGGTACCGTTATTGGTAATAACGAACGTGCTTCCTTGTC--------------------------------------------TGGGC-TCGAAAAAAAAATTCGCTGCTGTTT-TTC------------------------------------------------------------------------------------G--GGTCGCGTGCAG-AAAA----------------------------AAAGTAAGCGCAGAATTTAACGTAAATTT--CAGA------GTGTTTTTTTGTGTAGTTTTTCTCCTTTTTTGTT---------------------------------------------------------------------------------------------------TTTGTTATT---G-CTTACTGACTGACTGTTT-TC-TCCGGTTTAAGGAGGGTGGCAACCATCGATTTGCGTGTCGCGCTGCCGAA-AA--------------------------C-ACTGAAAAATCCCAA------AATCAAAATCAAATCATCAACACAA-TGGCGAAA-------AAAAAA----------------------TATAAATA----AAAATA--AACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotal
No Reads
droAna3
GAAGTGT-GTGTATATTTCTTAAATATTTTTTTT----C-----GGCTGATT------GT------TTTGTGGTTTTCT--------------------GTG----AA-CTTTGCGA------CAAAAGCTGAAAAGCAA--------------------C---------AAA--A---AG-------------------C-TGGCACCGTTGGCGTTTT-------T-----------------------------TAGCACATTTACCGCTAT-A-TAATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAAA-----------------TT-TGCAATTT-----------------------------------------------TTTTTCCACTTTTTTTTA------A------AGCAAGTCGCGTGCAG-A-AA------------------------------AGTAAGCGCAGAATTTAACGTAAGTTT---ATT------G-----TTTATTGTAGTTTTTTTTTTTA------------------------------------------------------------------------------------------------------------------------TT----------------TTTTTTA------TTAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGAAAA--AA--AAAACCAAAAACCAACAACAATAGTAACCGA--AACTC------------CGAAATCGAATC--------------------------------------------------------------------GGGA--AACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AA--AAAACCAAAAACCAACAA..................................................................................................................................................2120.501010000
droBip1
G-TGAG--------------------------------------TGAAGTGT------AAGATTGTTTTGTGGTTTTCT--------------------GTG----AACTTTTGCGA------CAACA---AAACAACAA--------------------C---------AAAA-A---AG-------------------C-TGGCACCGTTGGCGTTTT-------T-----------------------------TAGCACATTTACCGCTAT-A-TAATAACGT----GCTTCCTTGTC--------------------------------------------TGG---CCGAAA-----------------TT-TTCATTTT----T-----------------------------------------------T---TTTTTTC----------------GCAAGTCGCGTGCA----------------------------------------------GAATTTAACGTAAGTTT---ATT------G----------------------------------------------------------------------------T------------------------------------------------------T---TCTTTT---T-TTT----------------TTTTTTA------TTAGGGTGGCAACCATCGATTTGCGTGTCGCTCAGAAAA--AACAACAACAA--------CAACAAT-----------AATCCAAACTTTAACTCCAAA-----AT-------------------------------------------------------------------CGGGGA--AACAAAAGAAA-------CC--------SizeHit CountTotal NormTotal
No Reads
dp5
TATTTTT-----------CTGCCATGTGTTTT-TTTTC------------TT------GT-----------GCTG--------------------TGGTGTG----AA-TG----GG------CAAT----------AACAGACTCTGACTGCGCTGCAAC---------TACTCCTCCAG-----CTCAAGTTTTCTAC-----A------GTT---TT---TTTTG---------CAC-------------------ATACATATACCGTTTT-A---ATAACGTGCT-GGTTCCCTGTC--------------------------------------------TGGTGTCCGAA------------------TT--ACGGAGCCACTGCCGACGCTGTCAGTGTCGCACTCGCTGTTTCTACGGC-------TGC-CACCGCAGCCACCTCTGTCGCTGTTCG--GGTCGCGTGCAG-A-AA------------------------------AGTAAGCGCAGAATAAACCATACAAATATTAGT------G------------CAGTTTTTTTTCTTCTCTGTATGTGTGTGTGTGTGTGTG----------T-GTGTGTGC-ATGGTG---------------------------------------------------------------TGTGC-G----------------T-----------ATGGAGGGTGGCAACCATCGATTTGCGTGTCGCTCAGCCAA--AA--------------------------C-ACAGCCGCATTCAAA------AATCTAAATCGAATCA---AAG-------------------------------------------------------CTAACGGGAA--CACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................AT----------AACAGACTCTGACTGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
...........................GTTTT-TTTTC------------TT------GT-----------GCTG--------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............................................................................................................................AAT----------AACAGACTCTGACTGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
TGC-------------------CATGTGTTTT-TTTTC------------TT------GT-----------GCTG--------------------TGGTGTG----AA-TG----GG------CAAT----------AACAGACTCTGACTGCGCTGCAAC---------TACTCCTCCAG-----CTCAAGTTTTCTAC-----A------GTT---TT---TTTTG---------CAC-------------------ATACATATACCGTTTT-A---ATAACGTGCT-GGTTCCCTGTC--------------------------------------------TGGTGTCCGAA------------------TT--ACGGAGCCACTGCCGACGCTGTCAGTGTCGCACTCGCTGTTTCTACGGC-------TGC-CACCGCAGCCACCTCTGTCGCTGCTCG--GGTCGCGTGCAG-A-AA------------------------------AGTAAGCGCAGAATAAACCATACAAATATTAGT------G------------CAGTTTTTTTTCTTCTCTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGT-GTGTGTGC-ATGGTG---------------------------------------------------------------TGTGC-G----------------T-----------ATGGAGGGTGGCAACCATCGATTTGCGTGTCGCTCAGCCAA--AA--------------------------C-ACAGCCGCATTCAAA------AATCTAAATCGAATCA---AAG-------------------------------------------------------CTAACGGGAA--CACAAAAGAAATCAAATGCC--------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCACATTTACCGTTAT-A---ATAACGT----GCTTCCTTGTCGTTGAACGTCTGTTTTCGTTTGTTTGTGTGCGTTTTCATCTGTTTGC---GCGAT------------------TT-TTCGG-----------------------------------------------------------------------------CGTTTG--CGTCGCGTGCAG-CAAA------------------------------AGTAAGCGCAGAATTTAACGTAATTTT---CGT-----------------------------------------------------------------------------CGATAGTTTTTGCAGCTGTTGTTGTTGTCGCTGCTGCTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTG-TT----------------G-----T------TGTAGGGTGGCAACCATCGATTTGCGTGTCGTGCAGTCAA--A---------------------------C---------------------------AAATCAAA--------------------------------------------------------------------------------------------TGGAAAACGCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................T----GCTTCCTTGTCGTTGAACGTCTGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCGCAGAATTTAACGTAATTTT---CG...........................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GCACATTTACCGTTAT-A---ATAACGT----GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTTGTTGTTG-TT----------------G-----T------TG................................................................................................................................................................................................................21200.306000000000000000000000000000000000000000000000000000000000000060
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGTTGTTGTTGTTGTTG-.................................................................................................................................................................................................................................................21200.051010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGTTGTTGTTGTTGTTGT.......................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGTTGTTGTTGTTGTTGTTGTT.........................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGTTGTTGTCGCTG............................................................................................................................................................................................................................................................................................19200.051010000000000000000000000000000000000000000000000000000000000000
droMoj3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAT------------------TT-TTCGT-----------------------------------------------------------------------------CGTCTG--CGTCGCGTGCAA-C-AA------------------------------AGTAAGCGCAGAATTTAACGTAATTCC--------------------------------TTTTCTTTTTTTTTTTTATATATGTATATATT----------TTTTATATTCGATAGTT---------------------------------------------------------------GTTGC-T----------------G-----------TTATAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGTCAA--A---------------------------C---------------------------AAATCAAA--------------------------------------------------------------------------------------------TGGAAAACGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTTGTTTCGTGT---T---------------TTC----T-----TCCTATATATATATAT-----------ATTTATTT----------------------------------------------------------------------------TTTAAT---------TTTTCTTCGAG-----TGTGTGTGTTTTTTGTTGCTGTTGTTGTTGTTTT--T--TCGTCACTTTAGCGAAAC--GTATCCAAAATTTAGCACATTTACCGTTAT-A---ATAACGT----GCTTCCTTGTCGATAGAC---------------------------------------G---TCGG-------------------CT-TTTGTTATT---GTTGCTGCTGTTATTGTTGTTCATTTTTCGATTTTGGCAATTTTTTTT-TGTTGTATCT-TTTTTTTTGGCGTCTG--CGTTGCGTGCAGCAAAA------------------------------AGTTAGTGCAGAATTCAACGTAAGTTT---AGT------T----------------------------------------------------------------------CGATAGTTATTGC------------------------------------------------TGTTGTCGTTGTTG-TT----------------G-----T------TGCAGGGTGGCAACCATCGATTTGCGTGTCGCGCAGTCAA--A--------------------------------------------------------------------------------------------------------------------------------------------------CAAATCAAATGCTAAACGCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:35 PM