ID:

dsi_3623

 Coordinate:

2l:53046-53322 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.1 -18.1 -17.8

Flybase annnotation

five_prime_UTR [2l_52978_53440_+]; exon [2l_52978_53440_+]

No Repeatable elements found

Sense Strand Reads

#########################################################################################################################################################################################################################################################################################################################################################################################
CGTCGCAACGCAAGTGCTGGTGAAATCGTTGTGGCAGAAGTCTATTTTAAGTGAATAAATCTTTTGTTGTGCTCATGTTCGTAATTCCAAAACGTTCGTCGAGACTAAAAGACTTCTGCTAAGCTTTCGAGCAAAGAATAAAATGAAAAATACTATTTTCCACAAAAACATAGCGTAGCGATTGTGAACAGCGTAAAAAGAAGAAAGCAAAGATCTGCTTCTGTTTCTCACTCTCTCGGAATTGCGCTCTCCGCTTTCAATGATCAATACATTTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCACGCTCTCAGTAACCGCGAGACGACTTTCTCAAATTGCAAGTGTAAAAATTTATGAAAAC
********************************************************************************************************************************************************************.......((((..((((((.(((..((.((.......((((.(((......))))))).......)).)).))).))))))......))))************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 M025
embryo
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O001
Testis
....................................................................................................................................................................AAAACATAGCGTAGCGATTGT................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTCTCGGAATTGCGCTCTCCGCT.......................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AATTCCAAAACGTTCGTCGA................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TTGCCTTTTGTTTTGCACGCTCTCAGTA................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................GAAATCGTTGTGGCAGAAG................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGTTTCTCATTCTCTCGGAATT...................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................GTAATTCCAAAACGTTCGTC..................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTGTGTACAGCGTAAAAA.................................................................................................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................TTTTGTTGTGCTCATGTTCGTAATT................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GTAATTCCAAAACGTTCGTCGAGACTA.............................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TTTTGCACGCTCTCAGTAACCGCGAGA....................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGTAGCGATTGTGAACAGCGTAAAAAGA................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........GCAAGTGCTGGTGAAATCGTTGTGG....................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................GGTGAAATCGTTGTGGCAGAA.................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CATAGCGTAGCGATTGTGAACAGC......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCAACGCAAGTGCTGGTG................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................TTTTGTTGTGCTCATGTTCGTAAT.................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...CGCAACGCAAGTGCTGGTGAAATCGT............................................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................CTGGTGAAATCGTTGTGGCAGTC.................................................................................................................................................................................................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............AGTGCTGGTGAAATCGTTGTGGC...................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........CGCAAGTGCTGGTGAAAT............................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTCTCTCGGAATTGCGCTCTCCGCTTTC....................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GCCTTCTGTTCTGCACGCT....................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................GGTGAAATCGTTGTGGCAGG................................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................GTAATTCCAAAACGTTCGTCGAG.................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................CTGGTGAAATCGTTGTGGCAGAA.................................................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CCTCAGTAACGGCGAG........................................ 16 2 17 0.82 14 0 14 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................GTTTGTTATGATTTGTTTTT................................................................................ 20 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CCCTCAGTAACGGCGAG........................................ 17 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTCAGTAACGGCGAG........................................ 15 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTCAGTAACGGCGAGT....................................... 16 2 12 0.25 3 0 2 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................TCTCAGTAAGCGCGA......................................... 15 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CCCTCAGTAACGGCGA......................................... 16 2 20 0.25 5 0 3 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TGTTTTTAATTTTACCTTTTGTA................................................................ 23 3 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTTCGAGCATAGAATA............................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TACCGATTGTGAACA........................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................TCCCTCAGTAACGGCGAG........................................ 18 3 20 0.20 4 0 2 0 0 0 0 0 0 0 0 0 2 0 0
.................................................................................................................................................................................................................................................................................TACCGTTTGTTATTATTTGTTT.................................................................................. 22 1 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................AAACGTTCGTTGAGA................................................................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACTAAAACATAGCATTGCGAT................................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................................CCCTCAGTAACGGCGAGT....................................... 18 3 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAAAAACATAGCATTGCGAT................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................AAAACATAGCATTGCGAT................................................................................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 1
....................................................................................................................................................................................................................ATCTGCGTCTGTTCCTCA................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TCATTGAGACTAAAAGAATT...................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCAGCGTTGCGTTCACGACCACTTTAGCAACACCGTCTTCAGATAAAATTCACTTATTTAGAAAACAACACGAGTACAAGCATTAAGGTTTTGCAAGCAGCTCTGATTTTCTGAAGACGATTCGAAAGCTCGTTTCTTATTTTACTTTTTATGATAAAAGGTGTTTTTGTATCGCATCGCTAACACTTGTCGCATTTTTCTTCTTTCGTTTCTAGACGAAGACAAAGAGTGAGAGAGCCTTAACGCGAGAGGCGAAAGTTACTAGTTATGTAAATGTCAAACAATAATAAACAAAAAGTAAAACGGAAAACAAAACGTGCGAGAGTCATTGGCGCTCTGCTGAAAGAGTTTAACGTTCACATTTTTAAATACTTTTG
**************************************************************************************************************************.......((((..((((((.(((..((.((.......((((.(((......))))))).......)).)).))).))))))......))))******************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
........................TAGCAACACCGTCTTCAGATAAAATT....................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................GGCGCTCTGCTGAAAGA.............................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................ACAACACGAGTACAAGCATT..................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................GTTTTGCAAGCAGCTCTGATT............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................TTAGAAAACAACACGAGTACAAGCA....................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................AGCAGCTCTGTTTTTCTGAAT..................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0
........................TAGCAACACCGTCTTCAGATAAAAT........................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GTGCGAGAGTGAATGGCG........................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................................................CTGCTGGAAGTGCTTAACGTT.................... 21 3 4 0.25 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................AGTGAGTGCGCCTTAACG.................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0
..................................................................................................CGCTCTGATTTTCTG........................................................................................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 0 0 1
....................................................................................AAGGTCTAGCAAGCAG..................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................GAGTGAGAGAGCCGT........................................................................................................................................ 15 1 11 0.09 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................GTGCGAGAGTGACTGGC............................................ 17 2 11 0.09 1 0 0 0 0 0 0 1 0
....................................................................................AAGGTCTAGCAAGCAGC.................................................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGACGTATACGAAGAGTGAG................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................CTTGGTATGCAAATGTCAA................................................................................................. 19 3 17 0.06 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:52996-53372 + dsi_3623 CGTCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------GAAGTCTATTTTAAGT-GAATAAATC---------TTTTGTTGTG-CTCATGTTCG-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACTTCTG----------CT-AAGCTT-------TCGAGCAAAGAATAA-AAT-GAAAAATAC---------------TATTTTCC-------A-CAAAAACATAGCGTAGCGATTGTGAA--CAGCGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGA--GACGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAA-TTTATGAAAAC
droSec2 scaffold_14:66243-66619 + CGTCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------GAAGTCTATTTTAAGT-GAATAAATC---------GTTTGTTGTG-CTCATGTTCG-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACTTCTG----------CT-AAGCTT-------TCGAGCAAAGAATAA-AAT-GAAAAATAC---------------TATTTTCC-------A-CAAAAACATAGCGTAGCGATTGTGAA--CAGCGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGA--GACGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAA-TTTATTAAAAC
dm3 chr2L:67062-67439 + CGTCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------GAAGTCTATTTTAAGT-GAATAAATC---------TTTTATTGTG-CTCATGTTCG-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACTTCTG----------CA-AAGCTT-------TCGAGAAAAGAATAA-ATG-GAAAAATAC---------------TATTTTCC-------A-CAAAAACATAGCATAGCAATTGTGAA--CAGCGTA-AAA---CGAGGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGACTTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGC--GACGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAAATTCATGAAAAC
droEre2 scaffold_4929:93614-94008 + CGGCACAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--T-------------AAAGTCTATTTCAAGT-GAA-AAATC---------TATTGTTTTG-CTCCTGGTCG-TAATT---------CCGAAACGTTCGTC-------------------------------------------------------------------GTGCCCAAAACACTTCTG----------CA-AAGCTT-------TTGAACAAAGAATAA-AAG-GAAAAATAC---------------TATTTTTC-------A-CAAAAACATAGCATAGCGATTGCGAA--CAACGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCTTTCT---CTC--GTGCTCTC--------------------------------------------TCTCCG------CTGCGGACTTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTTTTGCA----CGCTCTCGGT--------------GAC---CGCGC--GACGACTTTCTCAAA-T------TGCAAGTGT-----------ACAAAATTTATGAAAAC
droYak3 2L:55557-55952 + CGGCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--T-------------AAAGTCTATATCAAGT-GA-CAAAAC---------TACTGTTCTG-CTCCTGGTCG-TAATT---------CCGAAACGTTCGTT-------------------------------------------------------------------GTGACTAAAACAAACCTG----------CA-AAACTT-------TCAAACAAAGAATTA-AAG-GAAAAATAC---------------AATTTTCC-------A-TAAAAACATAGCATTGCGATTGCGAA--CAACGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCTCTCT---CTCTTGTGCTCTC--------------------------------------------TCTCCG------CTGCGGACTTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTTTTGCA----CGCTCTCAGT--------------GAC---CGCGC--GACGACTTTCTTAAA-T------TGCAAGTGT-----------AAAAA-TTTATGAAAAC
droEug1 scf7180000409154:58929-59383 + CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAAGT-CGATAAAAC---------TACCACACTTCTCCCCGGTTG-CAAATAAGT-----------------------------------------------------------------------------------------------------------------------GTAT-------TAAAGAAAAGAATTC-AGA-GGAAACTACATATGTACATTTGTACATTTTTC-------C-CAAAAACATAGCATAACGATTGCGGA--CAACGTG-AAA---AGAAGAAAGCAAATTGTCAGTAC----GAGAGCAA-----GATCAGTTTCCGAATTCCTCTCTCTCACTCCCTCTCTCTCT---CTCTGA------CTTACTCTCTCTCTGTTTTTCTTTCTCCTCCTCTCTCTCTCTCTCT-----CTCTTCCTACAGACTTGCGCTCTT--CGTTT-----------------TCAATGATCAAT-----------ACAT-CCACAGTTTGTTATTATTTGTTTTTCATTCTGTCATTTGTTTTGCA----TGCTCTCTGA--------------GGC---CGCGC--GACGACTTTCTCGAA-T------TGCAAGTGT-----------AAA--TTTCATGAAAAC
droBia1 scf7180000301455:72688-73095 + CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAAGT-GAACAGAGC---------TACTGCACTG-CTCCGGACCG-CTATT---------GT-AGAGGTTCGGC-------------------------------------------------------------------GCAACTGAAACACGCCTG----------AA-AAGTAT-------TGAAACAAAGAGTTTCAGG-GGAAAACA----------------CATTTTCC-------T-CAAAATCGTAGCATAGCGAGTGCGGA--CAACGTG-AAA---AGAAGAAAGCAAAATGTGAGTTTG----AGAGCGC-----GATCAGTCTCTGT-----------T-CC------TCTCTCT---C------------------------------------------------------------CG------CTGCGGACTTGCGCTCTT--TGCCT-----------------TCAATGTTCAATTCAATACAGTTACAG-TTACAGTTTGTTATTATTTGTTTCCCACTCTGCCATTTGTTTTGCG----CGCTCTCAGA--------------G--------GC--GACGACTTTCTCAAA-TTCGCACTGCAAATGT-----------ACA--TTTTGTGA-AGC
droTak1 scf7180000413017:500267-500657 - CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAAGT-GAATAAAAC---------TACTGCACCT-CCCCGGGAAG-CGATT---------TCGGGGCGTTCGGC-------------------------------------------------------------------GTAAGTGAAACACGCCTC----------AG-AAGTAT-------TCAAACAAAGAATTTCAGC-GGAGAATA----------------TATTTTCC-------C-CAAAAACATAGCATAGCGAGTGCGGA--CAACGTG-AAA---AGAAGAAAGCAAAATGTGAGTTTT---GAGAGCAA-----GATCAGTTTCTGT-----------C-CC------TCTCTC-----------------------------------------------------------------CG------CTGCGGACTTGCGCTCTT--CGCGT-----------------TCAATGTTCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCACTCTGCCATTTGTTTTGCA----CGCTCTCAGA--------------G--------GC--GACGACTTTCTCGAA-T------TGCAAGTGT-----------ACA--TTTTATGA-AAC
droEle1 scf7180000490550:10792-11197 + CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTTTATTTCAAGT-GGATAGAAT---------TAACGCACAG-CCCCGGGTCT-CAAGT---------TGGAGGCGTTCAGC-------------------------------------------------------------------GTAATTGAAACACGCTAT----------AATAAGCAT--------AGAATAA-TAATTTCAAG-TGGAAATA----------------TTTTTTTC-------C-CAAAAACATAGCATAGCGAGTGCGGA--CAACGTACAAA---TGAAAAAACCGAAATGTGAGTTTG----AGGGCGAGA-TCGATCAGTTGCTGT-----------T-TC------TCTCTTT---CTC--------------------------------------------------------AGCG------CTGCGGATTTGAGCTCTC--TGCTT-----------------TCAACGATCAAT-----------ACAG-TTACAGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTATTGCA----CGCTCTCAGA--------------GGC---CGCGC--GACGACTTTCTCGAA-T------TGCAAGTGA-----------AAA--ATTTGTGAAAAC
droRho1 scf7180000779252:54620-55013 - CGTCGCAACACAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAATT-GGATACAAC---------TGTCGCATGG-CCCCGTGTTT-CAAGT---------TGGAGGCGTTTGGC-------------------------------------------------------------------GAAATTGAAACACGCTAC----------AA-AAGCAT-------TTAAACAAAGAATTTCAGG-GGAAAATA----------------TATTTTCC-------T-CAGAGACGTAGCATAGCGAGTGCGGA--CAACGTG-AAA---AGAAAAAAGCGAAATGTGAGTTTG----AGGGCGA-----GATCAGTTGCTGT-----------T-TC------TCTCTTT---CTC--------------------------------------------------------ACCG------ATGCGGACTTGAGCTCCT--CGCTT-----------------TCAATTGTCAAT-----------ACAG-TTACTGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTTTTGCA----CGCTCTCAGA--------------GGC---CGCGC--GACGACTTTCTCGAA-T------TACAAGTGT-----------ACAT--TTT--------
droFic1 scf7180000453904:1500054-1500448 + CGTCGACACGCAAGTGAACCCTGGTGAAA------TCGGCG----------TGGC--A-------------GAAGTATTTTTCAAGT-GAATGAAAC---------TACTGCATTACCCCCGGAGAG-CAAGT---------GGGAGGCGTTCTTC-------------------------------------------------------------------ATAAACAAGTTACGCCGC----------GA-AATAAT-------TTTAACAAAGAACTCGGGA-GAAAAATA----------------TATTTTTC-------C-CAAAAACATAGCATAACGAGTGCGGA--CAACGCA-AAA---AGAAGAAAGCGAAATGTGAGTT-----GAGAGCAA-----GATCAGTT--TGC-----------T-CC------TCTCTCT---CTC----------------------------------------------------------CG------ATGCGGACTTGCGCTCTT--CACTT-----------------TCAACGTTCCAT-----------ACAG-TTACAGTTTGTTATTATTTGTTTTTTACTCTGTCATTTGTTTTGCCATTTTGCTCTCA-----------------------------GACGACTTTCCCAAA-C------TGCAAGTGT-----------ACA---TTTACGAAAAC
droKik1 scf7180000302401:470498-470923 - CGTCGCGACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------AAAGCCTTTTTAAAGC-TGATAAAAC---------TACTATAGTGGCCCCGTGTC--CAAGTTAGT--------GGGCTCTTTGG-------------------------------------------------------------------GCAGCCGAAACCCGATTA----------AA-TAAGGT-------TTACACAAAGATTTT-AAG-GGAAAATA----------------TATTTTCC-------TCAAAAAACGTAGCATAGCGAGTGCGGA--CAACGTC-AAA---AGAAGAAAGCAAAATGTGAGTTTGACAGAGAGCACGAA--GATC-------GT-----------T-TC------TCCCTCC---CTCTC------------------------------------------------------AGCCCTCTACTTAGGAACTTGTGCTCTCTTTGCCT-----------------TCACTGCTCAGT-----------ACGGAATACAGTTTGTTATTATTTGTTTTTCTTTCTGCCATTTGTTTTGCA----CGCTCTCAGCTAGTTTCGCTCAGTCTC---GACAA--GGCGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAT-AGTACGAA---
droAna3 scaffold_12916:2052613-2052938 + CGTCGCGACGCAAGTG----------AAAAAAAGTTTC-TTTCGGTCCGTTT---TTAAAACCACGTTAAACGGGTCGATTTGGCGG-GGATAAAGC---------CGC-------------AG-----AAAC---------CCAC---------------------------------------------------------------TACCG---------GAAACTGAGATACATCGGAATCGGAGTCCT-CAGCCC-------CCCGGCCAGGAATTCCAGGTGGAAAACAC---------------GATTTCTCGCTTTTCTCCAAAAACGTAGCATAACGAGTGCGGA--CAGCGTT-AA----AGAAGAAAGCAAAATGTGAGATTG---GA-----------GATCGCTC--------------------------TCTCTCT-CTC------------------------------------------------------------------------------------------------------------------------------------------TTACAGTTTGTTATTATTTGTTT-------------------CGCA----CGCTCTCCCG---TTTT--A--TTGTC---CGCGC--GATC-------------------------------------------A-TTTACGAA---
droBip1 scf7180000396728:705564-705894 + CGTCGCGACGCAAGTG----------AAAAAAAGTGTC-TTTCGGTCCGTTT---TGAAAAGCACGTTAAACGGGTCGATTTGGCGG-GGATAGAGCCCGAAAACCCAC----------------------------------------------------------------------------------------------------TACCG---------GAGCCTCACATACGGCGGAGTCGGGGTCCT-CAGCGC-------CCCGGCCAGGAATTCCAGGTGGAAAACAC---------------GATTTCTCGGTTTCCTCCAAAAACGTAGCATAACGAGTGCGGA--CAGCGTC-AA----AGAAGAAAGCAAA-TGTGAGATTG---GG-----------GATCGCGC------------------TC------TC--TCT-CTC------------------------------------------------------------------------------------------------------------------------------------------CTACAGTTTGTTATTATTTGTTTCGCA-----------------------CGCTCTCCCG---TTTC--A--TTGTGCGCGGCGCGCGATC-------------------------------------------A-TTTACGA-ATC
dp5 4_group2:71908-72247 - CGTGTGAACGCAAGTG----TTGGTGAAA------TCG-TG----------TGGC--A-------------AAAGTCAATTTGAAGCTGGA-AAATT---------TACCTTATAGAC-CGCAGTGGCCTTATAAGAACATTGT---------AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------GA-AAACAT-------TTAAACAATATATTTGAGAAAGAAAAG-T---------------TATTTTTCG------ACCAAAAACATAGCATAGCGAGTGCGGA--TAACGTC-AAA---AGAAGAAAGCAAAATGTGAGTTTGA--GAGAGCAA-----GATCAGTTGCT------------------------C--TCTTCTC----------------------------------------------------------------------------------TTGC--CGCTT-----------------TCAATG-TGAAT-----------AAA---TACAGTTTGTTATTGTT--------------------------------------------------------------CGCGC--G-CGACTTTCACGAAAT------TGTAATTGT-----------AAAAATGTTATAAAAAT
droPer2 scaffold_8:3822358-3822697 + CGTGTGAACGCAAGTG----TTGGTGAAA------TCG-TG----------TGGC--A-------------AAAGTCAATTTGAAGCTGGA-AAATT---------TACCTTATAGAC-CGCAGTGGCCTTATAAAAACATTGT---------AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------GA-AAACAT-------TTAAACAATATATTTGAGAAAGAAAAG-T---------------TATTTTTCG------ACCAAAAACATAGCATAGCGAGTGCGGA--TAACGTC-AAA---AGAAGAAAGCAAAATGTGAGTTTGA--GAGAGCAA-----GATCAGTTGCT------------------------C--TCTTCTC----------------------------------------------------------------------------------TTGC--CGCTT-----------------TCAATG-TGAAT-----------AAA---TACAGTTTGTTATTGTT--------------------------------------------------------------CGCGC--G-CGACTTTCACGAAAT------TGTAATTGT-----------AAAAATGTTATAAAAAT
droWil2 scf2_1100000004851:102951-103270 - CGTGTAAACGCAAGTG----CGGTAAAAA------TCGCTA----------CG-T--A-------------AATGT-TATGGCAATG-CATGAAAAT---------T------------------------------------TGTAATAACAAATGAAAATA----------------------------ATAAATA--------------------------------------TTTTG----------TT-T-AAAT-------TCTATCAAAGAATT--------------------------------TACTAC-------A-CTTAATCATAACCAAGAAA---CAGA--CAACAGA-AAACGTTGAAGAAAGCAATAGCTGAGGGTGA--GAGAGCAAGAAGAGATCAGCCGCGCG-----------T-TC------TCTCTCT---TTT----------------------------------------------------------------------CGTACTGCATAATT---TTTT-----------------TCAAC--------------------------CAGTTTGTTATTATTC--------------------------T----CTCTCTTTGA---------G--CTGAG---CGCGC--G-CGACTTTCTCAAAAT------TGTAATTGT-----------AAA---GTTAAAAAAAA
droVir3 scaffold_13246:140308-140675 - CGTCGAAACGCAAGTG----TTGGTGAGG------CTA-CGACGCGTTG--TTTC--T------------------------TAA-------------------------------------------------------------AAGGACAGAAGGAACTAATACAACCTGTTCATTTCTTATAGAAATTATAATTTCGAAATCA---TATTGCACTTTCTGCAAC--------AAA-A--------TAAT-TAAC-AAACTTTA-------------------------------------------------------------------------ATCGCCTGTATGAAAGTATTCAA-AGA---AGAAGAAACAAAA---------------------------TACTCTCATCTCT-----------C-TC------TCTCTCT---CTCTGG------C--------------------------------------------------------------TCTTTCGATCAC---------------TGACTGCTTCACATGCTCATT-------------------GAAATTGTTATGATTAGTGTTTTATTTTGCCATTTTTCACTCT----CTCTCTCTCT--CTCTCACTCACTCTCAC-GCGGT--CACGACTTTCACGAATC------TGTAATAGCACC--------ACAAAATAAAAATAAAA
droMoj3 scaffold_6500:181732-182112 - CGTCGAAGCGCAAGTG----TTGGTGAGA------CTA-CGACGCTCTGTAT---TTAAAA------------GGACT--GGTG----------AAC---------TAACAC-------------------------------------------------------AACCTGTTAATATATTTAAAAAAATATAATATTTAATCCAACTAATT---------ACATTTTACACACAAA-AAGGCGCAATATT-AATCAAAACTGTA-------AG---------------------------------------------------------------CGT-CTGCATGCTGA--CAA-----AGA---AGAAGAATAAAAA---------------------------AATTA----CT-C-----------T-TCTCTCTCTCTCTCT---CTC--GAATACTC--------------------------------------------------------------T---------------CTTTTGATCATCGGTCGTTTCACATGCTCACT-------------------GAAAATGCTATGATTAGTGTTATATTTTGCTATATTTTGCACACG--CGCTCTCTCT---TTCT--TCTCTCTCATACGCTC---GCGACTTTCACGAAAC------TGTAATAATACCACAAAAATAAAAA-T---AAAAAAT
droGri2 scaffold_15252:17100403-17100426 + CGTCGGAACGCAAGTG----TTGGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------GAAGTCTATTTTAAGT-GAATAAATC---------TTTTGTTGTG-CTCATGTTCG-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACTTCTG----------CT-AAGCTT-------TCGAGCAAAGAATAA-AAT-GAAAAATAC---------------TATTTTCC-------A-CAAAAACATAGCGTAGCGATTGTGAA--CAGCGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGA--GACGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAA-TTTATGAAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................AAAACATAGCGTAGCGATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--CGCT.................................................................................................................................................................................................2311.00101000000000000000
.................................................................................................................................AATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------A........................................................................2811.00100000010000000000
.........................GAAA------TCGTTG----------TGGC--A-------------GAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..............................................................................................................................G-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..........................................................................................................TTTTGTTGTG-CTCATGTTCG-TAATT---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..............................................................................................................................G-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCA----CGCTCTCAGT--------------AAC---CGCGA--GA..........................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................CGTAGCGATTGTGAA--CAGCGTA-AAA---AGA...............................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........GCAAGTG----CTGGTGAAA------TCGTTG----------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
......................GGTGAAA------TCGTTG----------TGGC--A-------------GAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................CATAGCGTAGCGATTGTGAA--CAGC............................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
....GCAACGCAAGTG----CTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
..........................................................................................................TTTTGTTGTG-CTCATGTTCG-TAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
...CGCAACGCAAGTG----CTGGTGAAA------TCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
....................CTGGTGAAA------TCGTTG----------TGGC--A-------------GTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
............AGTG----CTGGTGAAA------TCGTTG----------TGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
........CGCAAGTG----CTGGTGAAA------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--CGCTT-----------------TC.............................................................................................................................................................................2811.00100000001000000000
......................GGTGAAA------TCGTTG----------TGGC--A-------------GG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..............................................................................................................................G-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
....................CTGGTGAAA------TCGTTG----------TGGC--A-------------GAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
droSec2
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------GAAGTCTATTTTAAGT-GAATAAATC---------GTTTGTTGTG-CTCATGTTCG-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACTTCTG----------CT-AAGCTT-------TCGAGCAAAGAATAA-AAT-GAAAAATAC---------------TATTTTCC-------A-CAAAAACATAGCGTAGCGATTGTGAA--CAGCGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGA--GACGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAA-TTTATTAAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......AACGCAAGTG----CTGGTGAAA------TCGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
..........CAAGTG----CTGGTGAAA------TCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.........GCAAGTG----CTGGTGAAA------TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
....GCAACGCAAGTG----CTGGTGAAA------TCGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCT---CTC----------------------------------------------------------------------GGAATTGCGCTC.........................................................................................................................................................................................................2111.0011000
........................................................................................................................................................................................................................................................................................................................................CAAAAACATAGCGTAGCGATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
......AACGCAAGTG----CTGGTGAAA------TCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........AAGTG----CTGGTGAAA------TCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.......................GTGAAA------TCGTTG----------TGGC--A-------------GAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
............................................................................CTATTTTAAGT-GAATAAATC---------GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
....................CTGGTGAAA------TCGTTG----------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.......ACGCAAGTG----CTGGTGAAA------TCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.....CAACGCAAGTG----CTGGTGAAA------TCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTTTCTCAAA-T------TGCAAGTGT-----------A................2511.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------TCACTCT---CTC----------------------------------------------------------------------GGAATTGCGCTCTC--C....................................................................................................................................................................................................2711.0011000
............................A------TCGTTG----------TGGC--A-------------GAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------GAAGTCTATTTTAAGT-GAATAAATC---------TTTTATTGTG-CTCATGTTCG-TAATT---------CCAAAACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACTTCTG----------CA-AAGCTT-------TCGAGAAAAGAATAA-ATG-GAAAAATAC---------------TATTTTCC-------A-CAAAAACATAGCATAGCAATTGTGAA--CAGCGTA-AAA---CGAGGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGACTTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTTTGCCTTTTGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGC--GACGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAAATTCATGAAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........AAGTG----CTGGTGAAA------TCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000001100000100000000000000100100001300000000000000010002000010000000100010100
............................A------TCGTTG----------TGGC--A-------------GAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000010000000010001000000010000000000000000000000000001000000000000000000000000000000001100
.........GCAAGTG----CTGGTGAAA------TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000
.GTCGCAACGCAAGTG----CTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000100000000000000000000100000000101000000000000000000000000000000000
............AGTG----CTGGTGAAA------TCGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000
.GTCGCAACGCAAGTG----CTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000021000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCAAA-T------TGCAAGTGT-----------AAAAAAT..........2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........CAAGTG----CTGGTGAAA------TCGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GTG----CTGGTGAAA------TCGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................ATTGTG-CTCATGTTCG-TAATT---------CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AAGTG----CTGGTGAAA------TCGTTG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTGT-----------T-TC------TCACTCT---CTC----------------------------------------------------------------------GGACT................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------------AAC---CGCGC--GACGACTTTC..................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
..........CAAGTG----CTGGTGAAA------TCGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
.GTCGCAACGCAAGTG----CTGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTGCA----CGCTCTCAGT--------------AAC---CGCGC--............................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
......AACGCAAGTG----CTGGTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................TAGCAATTGTGAA--CAGCGTA-AAA---CGAG..............................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
..............................................................................................................ATTGTG-CTCATGTTCG-TAATT---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.........GCAAGTG----CTGGTGAAA------TCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CGCTCTCAGT--------------AAC---CGCGC--............................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AACGTTCGTC-------------------------------------------------------------------GAGACTAAAAGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
CGGCACAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--T-------------AAAGTCTATTTCAAGT-GAA-AAATC---------TATTGTTTTG-CTCCTGGTCG-TAATT---------CCGAAACGTTCGTC-------------------------------------------------------------------GTGCCCAAAACACTTCTG----------CA-AAGCTT-------TTGAACAAAGAATAA-AAG-GAAAAATAC---------------TATTTTTC-------A-CAAAAACATAGCATAGCGATTGCGAA--CAACGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCTTTCT---CTC--GTGCTCTC--------------------------------------------TCTCCG------CTGCGGACTTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTTTTGCA----CGCTCTCGGT--------------GAC---CGCGC--GACGACTTTCTCAAA-T------TGCAAGTGT-----------ACAAAATTTATGAAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................AGCGATTGCGAA--CAACGTA-........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTTGTTTTGCA----CGCTCTCT.........................................................................................2411.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA----CGCTCTCGGT--------------GAC---CGCG...............................................................2011.0010000010
......AACGCAAGTG----CTGGTGAAA------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGT-----------T-TC------TCTTTCT---CTC--GTGC.....................................................................................................................................................................................................................................................................................2211.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CGCTCTCGGT--------------GAC---CGCGC--GACG........................................................2311.0010000100
......AACGCAAGTG----CTGGTGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
CGGCGCAACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--T-------------AAAGTCTATATCAAGT-GA-CAAAAC---------TACTGTTCTG-CTCCTGGTCG-TAATT---------CCGAAACGTTCGTT-------------------------------------------------------------------GTGACTAAAACAAACCTG----------CA-AAACTT-------TCAAACAAAGAATTA-AAG-GAAAAATAC---------------AATTTTCC-------A-TAAAAACATAGCATTGCGATTGCGAA--CAACGTA-AAA---AGAAGAAAGCAAA---------------------------GATCTGCTTCTGT-----------T-TC------TCTCTCT---CTCTTGTGCTCTC--------------------------------------------TCTCCG------CTGCGGACTTGCGCTCTC--CGCTT-----------------TCAATGATCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTTTTGCA----CGCTCTCAGT--------------GAC---CGCGC--GACGACTTTCTTAAA-T------TGCAAGTGT-----------AAAAA-TTTATGAAAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................AAAACATAGCATTGCGAT........................................................................................................................................................................................................................................................................................................................................................................................................18111.001108001020000
..........................................................................................................................................................................................................................................................................................................................................AAAACATAGCATTGCGATG.......................................................................................................................................................................................................................................................................................................................................................................................................1917.00723000020000
...........................................................................................................................................................................................................................................................................................................................................AAACATAGCATTGCGATG.......................................................................................................................................................................................................................................................................................................................................................................................................1813.00302001000000
.........................................................................................A-CAAAAC---------TACTGTTCTG-CTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.........................................................................................................................................................................................................................................................................................................................................AAAAACATAGCATTGCGAT........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................GTGAAA------TCGTTG----------TGGC--T-------------AAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
....................................................................................................................................................................................................................................................................................GAATTA-AAG-GAAAAATAC---------------AAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................................................................................ATAGCATTGCGATTGCGAA--C...............................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
..........................................................................................................................................................................................................................................................................................................................................AAAACATAGCATTGCGATTGTC....................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCG------CTGCGGACTTGCGCTC.........................................................................................................................................................................................................2111.00110000000000
..............................................................................................AAC---------TACTGTTCTG-CTCCTGGTCG-TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
droEug1
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAAGT-CGATAAAAC---------TACCACACTTCTCCCCGGTTG-CAAATAAGT-----------------------------------------------------------------------------------------------------------------------GTAT-------TAAAGAAAAGAATTC-AGA-GGAAACTACATATGTACATTTGTACATTTTTC-------C-CAAAAACATAGCATAACGATTGCGGA--CAACGTG-AAA---AGAAGAAAGCAAATTGTCAGTAC----GAGAGCAA-----GATCAGTTTCCGAATTCCTCTCTCTCACTCCCTCTCTCTCT---CTCTGA------CTTACTCTCTCTCTGTTTTTCTTTCTCCTCCTCTCTCTCTCTCTCT-----CTCTTCCTACAGACTTGCGCTCTT--CGTTT-----------------TCAATGATCAAT-----------ACAT-CCACAGTTTGTTATTATTTGTTTTTCATTCTGTCATTTGTTTTGCA----TGCTCTCTGA--------------GGC---CGCGC--GACGACTTTCTCGAA-T------TGCAAGTGT-----------AAA--TTTCATGAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAAGT-GAACAGAGC---------TACTGCACTG-CTCCGGACCG-CTATT---------GT-AGAGGTTCGGC-------------------------------------------------------------------GCAACTGAAACACGCCTG----------AA-AAGTAT-------TGAAACAAAGAGTTTCAGG-GGAAAACA----------------CATTTTCC-------T-CAAAATCGTAGCATAGCGAGTGCGGA--CAACGTG-AAA---AGAAGAAAGCAAAATGTGAGTTTG----AGAGCGC-----GATCAGTCTCTGT-----------T-CC------TCTCTCT---C------------------------------------------------------------CG------CTGCGGACTTGCGCTCTT--TGCCT-----------------TCAATGTTCAATTCAATACAGTTACAG-TTACAGTTTGTTATTATTTGTTTCCCACTCTGCCATTTGTTTTGCG----CGCTCTCAGA--------------G--------GC--GACGACTTTCTCAAA-TTCGCACTGCAAATGT-----------ACA--TTTTGTGA-AGCSizeHit CountTotal NormTotal
No Reads
droTak1
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAAGT-GAATAAAAC---------TACTGCACCT-CCCCGGGAAG-CGATT---------TCGGGGCGTTCGGC-------------------------------------------------------------------GTAAGTGAAACACGCCTC----------AG-AAGTAT-------TCAAACAAAGAATTTCAGC-GGAGAATA----------------TATTTTCC-------C-CAAAAACATAGCATAGCGAGTGCGGA--CAACGTG-AAA---AGAAGAAAGCAAAATGTGAGTTTT---GAGAGCAA-----GATCAGTTTCTGT-----------C-CC------TCTCTC-----------------------------------------------------------------CG------CTGCGGACTTGCGCTCTT--CGCGT-----------------TCAATGTTCAAT-----------ACAT-TTACAGTTTGTTATTATTTGTTTTTCACTCTGCCATTTGTTTTGCA----CGCTCTCAGA--------------G--------GC--GACGACTTTCTCGAA-T------TGCAAGTGT-----------ACA--TTTTATGA-AACSizeHit CountTotal NormTotal
No Reads
droEle1
CGTCGCAACGCAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTTTATTTCAAGT-GGATAGAAT---------TAACGCACAG-CCCCGGGTCT-CAAGT---------TGGAGGCGTTCAGC-------------------------------------------------------------------GTAATTGAAACACGCTAT----------AATAAGCAT--------AGAATAA-TAATTTCAAG-TGGAAATA----------------TTTTTTTC-------C-CAAAAACATAGCATAGCGAGTGCGGA--CAACGTACAAA---TGAAAAAACCGAAATGTGAGTTTG----AGGGCGAGA-TCGATCAGTTGCTGT-----------T-TC------TCTCTTT---CTC--------------------------------------------------------AGCG------CTGCGGATTTGAGCTCTC--TGCTT-----------------TCAACGATCAAT-----------ACAG-TTACAGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTATTGCA----CGCTCTCAGA--------------GGC---CGCGC--GACGACTTTCTCGAA-T------TGCAAGTGA-----------AAA--ATTTGTGAAAACSizeHit CountTotal NormTotal
No Reads
droRho1
CGTCGCAACACAAGTG----CTGGTGAAA------TCGGTG----------TGGC--A-------------AAAGTCTATTTCAATT-GGATACAAC---------TGTCGCATGG-CCCCGTGTTT-CAAGT---------TGGAGGCGTTTGGC-------------------------------------------------------------------GAAATTGAAACACGCTAC----------AA-AAGCAT-------TTAAACAAAGAATTTCAGG-GGAAAATA----------------TATTTTCC-------T-CAGAGACGTAGCATAGCGAGTGCGGA--CAACGTG-AAA---AGAAAAAAGCGAAATGTGAGTTTG----AGGGCGA-----GATCAGTTGCTGT-----------T-TC------TCTCTTT---CTC--------------------------------------------------------ACCG------ATGCGGACTTGAGCTCCT--CGCTT-----------------TCAATTGTCAAT-----------ACAG-TTACTGTTTGTTATTATTTGTTTTTCATTCTGCCATTTGTTTTGCA----CGCTCTCAGA--------------GGC---CGCGC--GACGACTTTCTCGAA-T------TACAAGTGT-----------ACAT--TTT--------SizeHit CountTotal NormTotal
No Reads
droFic1
CGTCGACACGCAAGTGAACCCTGGTGAAA------TCGGCG----------TGGC--A-------------GAAGTATTTTTCAAGT-GAATGAAAC---------TACTGCATTACCCCCGGAGAG-CAAGT---------GGGAGGCGTTCTTC-------------------------------------------------------------------ATAAACAAGTTACGCCGC----------GA-AATAAT-------TTTAACAAAGAACTCGGGA-GAAAAATA----------------TATTTTTC-------C-CAAAAACATAGCATAACGAGTGCGGA--CAACGCA-AAA---AGAAGAAAGCGAAATGTGAGTT-----GAGAGCAA-----GATCAGTT--TGC-----------T-CC------TCTCTCT---CTC----------------------------------------------------------CG------ATGCGGACTTGCGCTCTT--CACTT-----------------TCAACGTTCCAT-----------ACAG-TTACAGTTTGTTATTATTTGTTTTTTACTCTGTCATTTGTTTTGCCATTTTGCTCTCA-----------------------------GACGACTTTCCCAAA-C------TGCAAGTGT-----------ACA---TTTACGAAAACSizeHit CountTotal NormTotal
No Reads
droKik1
CGTCGCGACGCAAGTG----CTGGTGAAA------TCGTTG----------TGGC--A-------------AAAGCCTTTTTAAAGC-TGATAAAAC---------TACTATAGTGGCCCCGTGTC--CAAGTTAGT--------GGGCTCTTTGG-------------------------------------------------------------------GCAGCCGAAACCCGATTA----------AA-TAAGGT-------TTACACAAAGATTTT-AAG-GGAAAATA----------------TATTTTCC-------TCAAAAAACGTAGCATAGCGAGTGCGGA--CAACGTC-AAA---AGAAGAAAGCAAAATGTGAGTTTGACAGAGAGCACGAA--GATC-------GT-----------T-TC------TCCCTCC---CTCTC------------------------------------------------------AGCCCTCTACTTAGGAACTTGTGCTCTCTTTGCCT-----------------TCACTGCTCAGT-----------ACGGAATACAGTTTGTTATTATTTGTTTTTCTTTCTGCCATTTGTTTTGCA----CGCTCTCAGCTAGTTTCGCTCAGTCTC---GACAA--GGCGACTTTCTCAAA-T------TGCAAGTGT-----------AAAAT-AGTACGAA---SizeHit CountTotal NormTotal
No Reads
droAna3
CGTCGCGACGCAAGTG----------AAAAAAAGTTTC-TTTCGGTCCGTTT---TTAAAACCACGTTAAACGGGTCGATTTGGCGG-GGATAAAGC---------CGC-------------AG-----AAAC---------CCAC---------------------------------------------------------------TACCG---------GAAACTGAGATACATCGGAATCGGAGTCCT-CAGCCC-------CCCGGCCAGGAATTCCAGGTGGAAAACAC---------------GATTTCTCGCTTTTCTCCAAAAACGTAGCATAACGAGTGCGGA--CAGCGTT-AA----AGAAGAAAGCAAAATGTGAGATTG---GA-----------GATCGCTC--------------------------TCTCTCT-CTC------------------------------------------------------------------------------------------------------------------------------------------TTACAGTTTGTTATTATTTGTTT-------------------CGCA----CGCTCTCCCG---TTTT--A--TTGTC---CGCGC--GATC-------------------------------------------A-TTTACGAA---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................GTCCT-CAGCCC-------CCCGGCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................ATGTGAGATTG---GA-----------GATCG.....................................................................................................................................................................................................................................................................................................................................1811.001000001
..........................................................................................................................AG-----AAAC---------CCAC---------------------------------------------------------------TACCG---------GAAACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
CGTCGCGACGCAAGTG----------AAAAAAAGTGTC-TTTCGGTCCGTTT---TGAAAAGCACGTTAAACGGGTCGATTTGGCGG-GGATAGAGCCCGAAAACCCAC----------------------------------------------------------------------------------------------------TACCG---------GAGCCTCACATACGGCGGAGTCGGGGTCCT-CAGCGC-------CCCGGCCAGGAATTCCAGGTGGAAAACAC---------------GATTTCTCGGTTTCCTCCAAAAACGTAGCATAACGAGTGCGGA--CAGCGTC-AA----AGAAGAAAGCAAA-TGTGAGATTG---GG-----------GATCGCGC------------------TC------TC--TCT-CTC------------------------------------------------------------------------------------------------------------------------------------------CTACAGTTTGTTATTATTTGTTTCGCA-----------------------CGCTCTCCCG---TTTC--A--TTGTGCGCGGCGCGCGATC-------------------------------------------A-TTTACGA-ATCSizeHit CountTotal NormTotal
No Reads
dp5
CGTGTGAACGCAAGTG----TTGGTGAAA------TCG-TG----------TGGC--A-------------AAAGTCAATTTGAAGCTGGA-AAATT---------TACCTTATAGAC-CGCAGTGGCCTTATAAGAACATTGT---------AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------GA-AAACAT-------TTAAACAATATATTTGAGAAAGAAAAG-T---------------TATTTTTCG------ACCAAAAACATAGCATAGCGAGTGCGGA--TAACGTC-AAA---AGAAGAAAGCAAAATGTGAGTTTGA--GAGAGCAA-----GATCAGTTGCT------------------------C--TCTTCTC----------------------------------------------------------------------------------TTGC--CGCTT-----------------TCAATG-TGAAT-----------AAA---TACAGTTTGTTATTGTT--------------------------------------------------------------CGCGC--G-CGACTTTCACGAAAT------TGTAATTGT-----------AAAAATGTTATAAAAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............AGTG----TTGGTGAAA------TCG-TG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000220000
............AGTG----TTGGTGAAA------TCG-TG----------TGGC--A-------------AAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020100001000
.....................................................................................................................................................................................................................................................................................................................................................................AACGTC-AAA---AGAAGAAAGCAAAATG..................................................................................................................................................................................................................................................................................................................................................................2512.0020200000000
............AGTG----TTGGTGAAA------TCG-TG----------TGGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.......ACGCAAGTG----TTGGTGAAA------TCG-TG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.........GCAAGTG----TTGGTGAAA------TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
......................................................................................................................................................................................................................................................................................................................................................................ACGTC-AAA---AGAAGAAAGCAAAATGTG................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....GAACGCAAGTG----TTGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...GTGAACGCAAGTG----TTGGTGAAA------TCG-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..........................AAA------TCG-TG----------TGGC--A-------------AAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
............AGTG----TTGGTGAAA------TCG-TG----------TGGC--A-------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.........GCAAGTG----TTGGTGAAA------TA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010000
.................................................................................................................................................................................................................................................................................................................................................AGCATAGCGAGTGCGGA--TAACGTC-........................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGA--GAGAGCAA-----GATCAGTTGCT------------------------C--TC..................................................................................................................................................................................................................................................................................................2511.0010100000000
.....GAACGCAAGTG----TTGGTGAAA------TCG-TG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
...............................................................................................................................................T---------AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
CGTGTGAACGCAAGTG----TTGGTGAAA------TCG-TG----------TGGC--A-------------AAAGTCAATTTGAAGCTGGA-AAATT---------TACCTTATAGAC-CGCAGTGGCCTTATAAAAACATTGT---------AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------GA-AAACAT-------TTAAACAATATATTTGAGAAAGAAAAG-T---------------TATTTTTCG------ACCAAAAACATAGCATAGCGAGTGCGGA--TAACGTC-AAA---AGAAGAAAGCAAAATGTGAGTTTGA--GAGAGCAA-----GATCAGTTGCT------------------------C--TCTTCTC----------------------------------------------------------------------------------TTGC--CGCTT-----------------TCAATG-TGAAT-----------AAA---TACAGTTTGTTATTGTT--------------------------------------------------------------CGCGC--G-CGACTTTCACGAAAT------TGTAATTGT-----------AAAAATGTTATAAAAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.GTGTGAACGCAAGTG----TTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002011000
.GTGTGAACGCAAGTG----TTGGTGAAA------TC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
........CGCAAGTG----TTGGTGAAA------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
............AGTG----TTGGTGAAA------TCG-TG----------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................AATGTGAGTTTGA--GAGAGCAA-----GAT.......................................................................................................................................................................................................................................................................................................................................2411.001000010
...GTGAACGCAAGTG----TTGGTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGTGAGTTTGA--GA.....................................................................................................................................................................................................................................................................................................................................................1911.001001000
..............................................................................................................................................GT---------AAA-------------------------------------------------------------------GAAAACGAACCACGCGCT----------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGTT--------------------------------------------------------------CGCGC--G-CGACTTT...................................................2111.001010000
droWil2
CGTGTAAACGCAAGTG----CGGTAAAAA------TCGCTA----------CG-T--A-------------AATGT-TATGGCAATG-CATGAAAAT---------T------------------------------------TGTAATAACAAATGAAAATA----------------------------ATAAATA--------------------------------------TTTTG----------TT-T-AAAT-------TCTATCAAAGAATT--------------------------------TACTAC-------A-CTTAATCATAACCAAGAAA---CAGA--CAACAGA-AAACGTTGAAGAAAGCAATAGCTGAGGGTGA--GAGAGCAAGAAGAGATCAGCCGCGCG-----------T-TC------TCTCTCT---TTT----------------------------------------------------------------------CGTACTGCATAATT---TTTT-----------------TCAAC--------------------------CAGTTTGTTATTATTC--------------------------T----CTCTCTTTGA---------G--CTGAG---CGCGC--G-CGACTTTCTCAAAAT------TGTAATTGT-----------AAA---GTTAAAAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......AACGCAAGTG----CGGTAAAAA------TCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202000
......................................................................................................................................................................................................................................................................................................................................................................................GAAAGCAATAGCTGAGGGTGA--GAGA...................................................................................................................................................................................................................................................................................................................................................2512.00200200
..........................................................................................................................................................................................................................................................................................................................................................................................GCAATAGCTGAGGGTGA--GA.....................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................GGCAATG-CATGAAAAT---------T------------------------------------TGTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
...................................................................................................................................................................................................................................................................................................................................................................................GAAGAAAGCAATAGCTGAGGGTGA--.......................................................................................................................................................................................................................................................................................................................................................2411.00100100
............................................................................................................................................................................................................................................................................................................................................................................................AATAGCTGAGGGTGA--GAG....................................................................................................................................................................................................................................................................................................................................................1811.00100001
.........................................................................................................................................................................................................................................................................................................................................................AA---CAGA--CAACAGA-AAACGTTG................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................AA---CAGA--CAACAGA-AAACG...................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
droVir3
CGTCGAAACGCAAGTG----TTGGTGAGG------CTA-CGACGCGTTG--TTTC--T------------------------TAA-------------------------------------------------------------AAGGACAGAAGGAACTAATACAACCTGTTCATTTCTTATAGAAATTATAATTTCGAAATCA---TATTGCACTTTCTGCAAC--------AAA-A--------TAAT-TAAC-AAACTTTA-------------------------------------------------------------------------ATCGCCTGTATGAAAGTATTCAA-AGA---AGAAGAAACAAAA---------------------------TACTCTCATCTCT-----------C-TC------TCTCTCT---CTCTGG------C--------------------------------------------------------------TCTTTCGATCAC---------------TGACTGCTTCACATGCTCATT-------------------GAAATTGTTATGATTAGTGTTTTATTTTGCCATTTTTCACTCT----CTCTCTCTCT--CTCTCACTCACTCTCAC-GCGGT--CACGACTTTCACGAATC------TGTAATAGCACC--------ACAAAATAAAAATAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........CGCAAGTG----TTGGTGAGG------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.008030000002000000001000000000000000000000000000000000000000000200
......AACGCAAGTG----TTGGTGAGG------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000400
........CGCAAGTG----TTGGTGAGG------CTA-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000001000000000000000000000000000000000010
......AACGCAAGTG----TTGGTGAGG------CTA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000010000000000000000000000000000010
........CGCAAGTG----TTGGTGAGG------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002010000000000000000000000000000000000000000000000000000000000100
........CGCAAGTG----TTGGTGAGG------CTA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000110
.....AAACGCAAGTG----TTGGTGAGG------CTA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.GTCGAAACGCAAGTG----TTGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001000000000000000000000000000000000000000000000000000000000
..........CAAGTG----TTGGTGAGG------CTA-CGACGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.............GTG----TTGGTGAGG------CTA-CGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
.........GCAAGTG----TTGGTGAGG------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...........AAGTG----TTGGTGAGG------CTA-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
CGTCGAAACGCAAGTG----TTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........AAGTG----TTGGTGAGG------CTA-CGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GCGGT--CACGACTTTCACGAATC------TGTAA................................2811.001000000000000000000000000001000000000000000000000000000000000000
.........GCAAGTG----TTGGTGAGG------CTA-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
......AACGCAAGTG----TTGGTGAGG------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..........CAAGTG----TTGGTGAGG------CTA-CG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
.....AAACGCAAGTG----TTGGTGAGG------CTA-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AACAAAA---------------------------TACTCTCATCTCT-----------C-TC------T.......................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................TAA-------------------------------------------------------------AAGGACAGAAGGAACTAATAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
....................................................TTC--T------------------------TAA-------------------------------------------------------------AAGGACAGAAGGAACTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
........CGCAAGTG----TTGGTGAGG------CTG-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
......................................................C--T------------------------TAA-------------------------------------------------------------AAGGACAGAAGGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................AAACTTTA-------------------------------------------------------------------------ATCGCCTGTATGAAAGT...............................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......ACGCAAGTG----TTGGTGAGG------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
.....AAACGCAAGTG----TTGGTGAGG------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...........AAGTG----TTGGTGAGG------CTA-CGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.GTCGAAACGCAAGTG----TTGGTGAGG------CTA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................A-AGA---AGAAGAAACAAAA---------------------------TACTCT....................................................................................................................................................................................................................................................................................................................................2311.001000000000010000000000000000000000000000000000000000000000000000
..........CAAGTG----TTGGTGAGG------CTA-CGACGCGTTG--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................AGA---AGAAGAAACAAAA---------------------------TA........................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCT--CTCTCACTCAC..........................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
....................................................TTC--T------------------------TAA-------------------------------------------------------------AAGGACAGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19180.061000000000000000001000000000000000000000000000000000000000000000
droMoj3
CGTCGAAGCGCAAGTG----TTGGTGAGA------CTA-CGACGCTCTGTAT---TTAAAA------------GGACT--GGTG----------AAC---------TAACAC-------------------------------------------------------AACCTGTTAATATATTTAAAAAAATATAATATTTAATCCAACTAATT---------ACATTTTACACACAAA-AAGGCGCAATATT-AATCAAAACTGTA-------AG---------------------------------------------------------------CGT-CTGCATGCTGA--CAA-----AGA---AGAAGAATAAAAA---------------------------AATTA----CT-C-----------T-TCTCTCTCTCTCTCT---CTC--GAATACTC--------------------------------------------------------------T---------------CTTTTGATCATCGGTCGTTTCACATGCTCACT-------------------GAAAATGCTATGATTAGTGTTATATTTTGCTATATTTTGCACACG--CGCTCTCTCT---TTCT--TCTCTCTCATACGCTC---GCGACTTTCACGAAAC------TGTAATAATACCACAAAAATAAAAA-T---AAAAAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........CGCAAGTG----TTGGTGAGA------CTA-CGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002020000
..........CAAGTG----TTGGTGAGA------CTA-CGACGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
.....AAGCGCAAGTG----TTGGTGAGA------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..TCGAAGCGCAAGTG----TTGGTGAGA------CTA-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
CGTCGAAGCGCAAGTG----TTGGTGAGA------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.........GCAAGTG----TTGGTGAGA------CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACTTTCACGAAAC------TGTAAT...............................2211.001100000
........CGCAAGTG----TTGGTGAGA------CTA-CGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAA---------------------------AATTA----CT-C-----------T-TCTCTC..........................................................................................................................................................................................................................................................................................................1911.001000010
..........CAAGTG----TTGGTGAGA------CTA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
........CGCAAGTG----TTGGTGAGA------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
.......GCGCAAGTG----TTGGTGAGA------CTA-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droGri2
CGTCGGAACGCAAGTG----TTGGTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:59 PM