ID:

dsi_3620

 Coordinate:

2r:1069784-1069933 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.6 -16.3 -15.8 -15.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. 2l:20713355-20713378 +
  2. 2l:20774897-20774920 +
  3. 2l:21371855-21371878 +
  4. dsi_23960  2l:23121390-23121413 +
  5. 2r:801586-801609 +
  6. 3l:9203726-9203749 +
  7. 3l:22802857-22802880 +
  8. 3l:23892975-23892998 +
  9. 3r:64974-64997 +
  10. 4:461952-461975 +
  11. x:36348-36371 +
  12. x:17406468-17406491 +
  13. x:19129441-19129464 +
  14. x:20204278-20204301 +
  15. x:20544677-20544700 +
  16. node_67530:73-96 +
  17. node_101820:3508-3531 +
  18. node_42489:12-35 +
  19. node_53414:2-25 +
  20. node_4230:6969-6992 +
  21. 2l:20809280-20809303 -
  22. dsi_8644  2l:20898911-20898934 -
  23. dsi_8278  2l:22297857-22297880 -
  24. dsi_3620  2r:1069840-1069863 -
  25. dsi_5232  2r:1136006-1136029 -
  26. 2r:1651459-1651482 -
  27. 2r:2410570-2410593 -
  28. 2r:10579760-10579783 -
  29. 3l:22844439-22844462 -
  30. 3l:22898089-22898112 -
  31. 3l:23662310-23662333 -
  32. 3l:24171820-24171843 -
  33. x:18460931-18460954 -
  34. x:20431652-20431675 -
  35. node_118775:28-51 -
  36. node_116834:1033-1056 -
  37. node_116834:1127-1150 -
  38. node_79949:4431-4454 -
  39. node_128172:80-103 -
  40. node_22144:83-106 -
  41. 2l:23531653-23531676 -
  42. 2r:811594-811617 -
  43. 2r:2342238-2342261 -
  44. 2r:2376660-2376683 -
  45. 3l:22864445-22864468 -
  46. 3l:22921282-22921305 -
  47. 3l:22981310-22981333 -
  48. 3l:23078262-23078285 -
  49. 3l:23131112-23131135 -
  50. 4:918264-918287 -
  51. 4:999013-999036 -
  52. x:56487-56510 -
  53. x:14619995-14620018 -
  54. x:20001852-20001875 -
  55. x:20659991-20660014 -
  56. node_13788:11894-11917 -
  57. node_14489:163-186 -
  58. node_45273:97-120 -
  59. 2l:20987249-20987272 +
  60. 2l:21218600-21218623 +
  61. 2l:21756342-21756365 +
  62. 2l:23036764-23036787 +
  63. 2r:821169-821192 +
  64. dsi_6482  2r:1194236-1194259 +
  65. 2r:1807217-1807240 +
  66. 2r:3126623-3126646 +
  67. 3l:19802275-19802298 +
  68. 3l:22134805-22134828 +
  69. 3l:22874020-22874043 +
  70. 3l:22930857-22930880 +
  71. 3l:22990885-22990908 +
  72. 3l:23189310-23189333 +
  73. 3r:1680912-1680935 +
  74. x:14966089-14966112 +
  75. x:19904424-19904447 +
  76. node_36729:3130-3153 +
  77. node_23394:915-938 +
  78. node_22417:2385-2408 +
  79. 2r:21483151-21483174 +
  80. 3l:22507239-22507262 +
  81. 3r:360367-360390 +
  82. x:10292160-10292183 +
  83. x:19730026-19730049 +
  84. node_77442:5-28 +
  85. 2l:20747286-20747309 -
  86. 2l:20820113-20820136 -
  87. 2l:21928450-21928473 -
  88. 2l:21968333-21968356 -
  89. 2l:22440094-22440117 -
  90. 3r:3261536-3261559 -
  91. node_118041:1655-1678 -
  92. node_14828:24-47 -
  93. node_14398:329-352 -
  94. 2l:20744581-20744604 +
  95. 2r:2031222-2031245 +
  96. 3l:22450501-22450524 +
  97. 3r:2789886-2789909 +
  98. 4:703481-703504 +
  99. x:107991-108014 +
  100. dsi_11924  x:3395791-3395814 +
  101. x:14996774-14996797 +
  102. x:19183814-19183837 +
  103. x:20030537-20030560 +
  104. x:20826202-20826225 +
  105. node_87771:23-46 +
  106. node_121520:35-58 +
  107. node_6097:157-180 +
  108. node_8771:29-52 +
  109. node_86973:30-53 +
  110. node_2081:2722-2745 +
  111. node_58857:40-63 +
star
  1. dsi_8278  2l:22297801-22297827 -
  2. dsi_3620  2r:1069784-1069810 -
  3. dsi_5232  2r:1135950-1135976 -
  4. dsi_6482  2r:1194289-1194315 +
  5. 3l:22844383-22844409 -

Sense Strand Reads

AACTTTATAAAAATGAGTTATTTGGACCATTTGCATAAGGAACCGTACGCGTGAGTGTTATTAGTTATGTTATAGTATATTATTATACCCGTTACTCGTAGAGTTAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGCGTCTCCGACCATAAAAAGAATATATATTCTTGATCATGATATTGATCGAGAGTCGAACTAACCATGTCCGTCTGTTCGTATGAACGTCGAGATCTCAGAAACT
************************************************************************************************************************....................................................(((((.(((((......))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 O001
Testis
 SRR902009
testis
 O002
Head
 GSM343915
embryo
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTCGA............. 26 0 6 7.83 47 0 26 13 2 2 0 4 0 0 0 0 0 0
........................................................................................................................TTCGTTGAAAAGTATGTAACAGGC.......................................................................................................... 24 0 20 4.70 94 69 0 0 0 0 0 0 25 0 0 0 0 0
...........................................................................................................AGGGTATACTAGATTCGTTGAAAAG...................................................................................................................... 25 0 20 2.55 51 51 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTCGAGA........... 28 0 6 2.00 12 1 1 1 7 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCCGTCTGTTCGTATGAACGTCGAGA........... 26 0 6 1.17 7 1 2 3 0 0 0 1 0 0 0 0 0 0
............................................................................................................GGGTATACTAGATTCGTTGAAAA....................................................................................................................... 23 0 20 0.90 18 18 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACG................. 22 0 6 0.83 5 0 0 0 0 5 0 0 0 0 0 0 0 0
........................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAG........................................................................................................ 26 0 20 0.65 13 0 0 0 0 0 0 0 0 13 0 0 0 0
........................................................................................................................TTCGTTGAAAAGTATGTAACAGGCA......................................................................................................... 25 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AACGTCGAGATCTCAGAAAC. 20 0 20 0.60 12 0 0 0 0 0 0 0 0 0 12 0 0 0
................................................................................................................................................................................TTGATCATGATATTGATCGAGAGTCGAAC............................................. 29 0 5 0.60 3 1 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCCTCTATTCGTATGAACGTCGAGA........... 28 2 8 0.50 4 0 0 0 4 0 0 0 0 0 0 0 0 0
..................TATTTGGACCATTTGCATAAG................................................................................................................................................................................................................... 21 0 5 0.40 2 0 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACCATGTCCGTCTGTTCGTA....................... 21 0 5 0.40 2 0 0 0 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................TATGTAACAGGCAGCGTCTCCGAC.............................................................................................. 24 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCATGATATTGATCGAGAGTCGAAC............................................. 25 0 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGTATGAA................... 26 0 5 0.40 2 0 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAGCGTCTC.................................................................................................. 25 0 5 0.40 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATTGATCGAGAGTCGAACTAACCATG..................................... 26 0 5 0.40 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGTATGAACG................. 28 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGATCATGATATTGATCGAGAGTCGAAC............................................. 28 0 5 0.40 2 0 0 0 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTC............... 24 0 6 0.33 2 0 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CATGTCCGTCTGTTCGTATGAACGT................ 25 0 6 0.33 2 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTCCGTCTGTTCGTATGAACGTCGA............. 25 0 6 0.33 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TCGTAGAGTTAAAGGGTATACTAGA.................................................................................................................................. 25 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTATGAACGTCGAGA........... 17 0 9 0.22 2 0 0 0 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TGATATTGATCGAGAGTCGAACTAACCA....................................... 28 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGATCATGATATTGATCGAGAGTCGA............................................... 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGTATGTAACAGGCAGCGT..................................................................................................... 19 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................TTATGGTATTGATCGTGAGTCGA............................................... 23 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGATATTGATCGAGAGTCGAAC............................................. 22 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................ACTAACCATGTCCGTCTGTTCGTATGA.................... 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGAACTAACCATGTCCGTCTGT............................ 22 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGTATGA.................... 25 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATCGAGAGTCGAACTAACCAT...................................... 21 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................TTTGGACCATTTGCATAAGGAACCGTA........................................................................................................................................................................................................... 27 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................AACCATGTCCGTCTGTTCGG........................ 20 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................ATTTGGACCATTTGCATAAGG.................................................................................................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTCTTGATCATGATATTGATCGAGAGT.................................................. 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCAAAAGTCGAACTAACCATATCCGTC............................... 27 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGT........................ 21 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGTATGAAC.................. 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GATCATGATATTGATCGAGAGTGCC............................................... 25 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCTTGATCATGATATTGATCGAGAGT.................................................. 26 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAGCGTC.................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAGCGTCTCC................................................................................................. 26 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGTATGAACGTT............... 30 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...TTTATAAAAATGAGTTATTTGGACC.............................................................................................................................................................................................................................. 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TAACCATGTCCGTCTGTTCGTATGAACGT................ 29 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................TTGCATAAGGAGCCGTACGCG....................................................................................................................................................................................................... 21 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................ATAAGGAACCGTACGCGTGAG................................................................................................................................................................................................... 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGTTATTAGTTATGTTATAGT.............................................................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................TAAAGGGTATACTAGATTCGTTGAAAAGTA.................................................................................................................... 30 0 10 0.20 2 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GATATTGATCGAGAGTCGAACT............................................ 22 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................GGCAGCGTGTCCGAGCGTAAA........................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................GTAACAGGCAGCGTCTCCGACCATA.......................................................................................... 25 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCCGACCATAAAAAGAATATATATTC.......................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATTGATCGAGAGTCGAACTA........................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................TTTGGACCATTTGCATAAGGAAC............................................................................................................................................................................................................... 23 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............AGTTATTTGGACCATTTGCAT...................................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................AAAAGTATGTCACAGGCAGCGTC.................................................................................................... 23 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CATGATATTGATCTAGGGTCG................................................ 21 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................TGGACCATTTGCATAAGGAAC............................................................................................................................................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAGCGTCTCCGA............................................................................................... 28 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAGCGTCGC.................................................................................................. 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCGAGAGTCGAACTAACCATGTCCGTC............................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACCATGTCCGTCTGTTCGT........................ 20 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TCATGATATTGATCGAGAGTCGAACT............................................ 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GATCGAGAGTCGAACTAA.......................................... 18 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGATCGAGAGTCGAACTAACCATGTC................................... 27 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................TATGTAACAGGCAGCTTATCT................................................................................................. 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGTCTGTTCGTATGAACGTCGAG............ 23 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTCGAG............ 27 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCCGTCTGTTCGTATGAACGTC............... 22 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................TAAAGGGTATACTAGATTCGTTGAA......................................................................................................................... 25 0 12 0.17 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTCGG............. 26 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACTTCGAGA........... 28 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGT................ 23 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCGTCTGTTCGTATGAACGTCGA............. 23 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTCCGTCTGTTCGTATGAACGTCGAGA........... 27 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GTCTGTTCGTATGAACGT................ 18 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCGTTGAAAAGTATGTAACAGGCA......................................................................................................... 24 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAG........................................................................................................ 19 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CGAGATCTCAGAAACT 16 0 20 0.15 3 1 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CTCGTTGAAAAGTATGTAACAGGCAGC....................................................................................................... 27 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTCGAGG........... 28 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTATGAACGTCGAGATCTCAG..... 23 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGTTCGTATGAACGTCGAGATCTA....... 24 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGCTCGTATGAACGTCGAGA........... 28 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................TTCGTATGAACGTCGAGATCT........ 21 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAGTATGTAACAGGCAGTTACT................................................................................................... 24 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................TCGTAGAGTTAAAGGGTATACTAGATT................................................................................................................................ 27 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AGAGTTAAAGGGTATACTAGATTCGT............................................................................................................................. 26 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTA............... 24 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTATGAACGTCGAGATC......... 20 0 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCCGTTCGTATGAACGTCGA............. 26 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTAGAGTTAAAGGGTATACTAGA.................................................................................................................................. 23 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGTTAAAGGGTATACTAGATTCGTTG........................................................................................................................... 26 0 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................TAGATTCGTTGAAAAGTATGTAACAGGC.......................................................................................................... 28 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................TATACTAGATTCGTTGAAAAGTATG.................................................................................................................. 25 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................................................................................................CGAGATCTCAGAAAC. 15 0 20 0.10 2 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTATGAACGTCGAGATCTA....... 22 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GGGTATACTAGATTCGT............................................................................................................................. 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CGTAGAGTTAAAGGGTGTAGTAGATT................................................................................................................................ 26 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................TTCGTATGAACGTCGA............. 16 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATGAACGTCGAGATCTCAGAAACT 24 0 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGCCGA............. 26 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TTAAAGGGTATACTAGATTCGT............................................................................................................................. 22 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TAAAGGGTATACTAGATTCGTTGAAA........................................................................................................................ 26 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTCCGTCTGTTCGTATGAACGTT............... 24 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGTCTGTTCGTATGAACGTT............... 20 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TATTATTATACCCGTTACTC......................................................................................................................................................... 20 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TAAAGGGTATACTAGAATCGTTGAA......................................................................................................................... 25 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TTCGTTGAAAAGTATGTAACAGACAGC....................................................................................................... 27 1 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TGTCCGTCTGTTCGTATGAACGTTT.............. 25 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AACCATGCCTGTCTGTTGG......................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGTATGAACGTCGAGATCTCAG..... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GTCGAGATCTCAGAAACT 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................AGGGTATACTAGATTCGTTGCAAAGTA.................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TTGAAAAGTATGTAACAGGCA......................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GAATATATATTATTGATCAGGATA.............................................................. 24 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................AAGGGTATACTAGATTCGTTGAAAAGT..................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGAACTTACCAGGTCCG................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTCGTTGACAAGTATGTAACAGGCA......................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TCCGTCTGTTCGTATGAACGTCGAAA........... 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................AAGGGTATACTAGATTCGTTG........................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................GATTCGTTGAAAAGT..................................................................................................................... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTACACCCGTTACTCGTAGAGTTT................................................................................................................................................ 24 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................GATCATGAAATTGATC........................................................ 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATACCCGTTACTCGTAGAGT.................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTGAAATATTTTTACTCAATAAACCTGGTAAACGTATTCCTTGGCATGCGCACTCACAATAATCAATACAATATCATATAATAATATGGGCAATGAGCATCTCAATTTCCCATATGATCTAAGCAACTTTTCATACATTGTCCGTCGCAGAGGCTGGTATTTTTCTTATATATAAGAACTAGTACTATAACTAGCTCTCAGCTTGATTGGTACAGGCAGACAAGCATACTTGCAGCTCTAGAGTCTTTGA
**************************************************....................................................(((((.(((((......))))).)))))************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 O001
Testis
 M053
female body
 M024
male body		 M025
embryo
 O002
Head
 SRR1275483
Male prepupae
...........................................................................................................................................................................................................................ACAAGCATACTTGCAGCTCTAGAGT...... 25 0 5 10.60 53 32 17 1 0 2 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................AGACAAGCATACTTGCAGCTCTAGAGT...... 27 0 5 4.20 21 8 8 2 0 3 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGCAACTTTTCATACATTGTCCGTC........................................................................................................ 26 0 20 3.55 71 21 50 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGCAACTTTTCATACATTGTCCGT......................................................................................................... 25 0 20 1.60 32 32 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTTCCCATATGATCTAAGCAACTTT........................................................................................................................ 25 0 20 1.55 31 0 31 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTTCCCATATGATCTAAGCAACTTT........................................................................................................................ 26 0 12 1.42 17 3 5 0 6 1 2 0 0 0 0 0 0 0 0
.............................................................................................................................................CCGTCGCAGAGGCTGGTATTTTTCTT................................................................................... 26 0 5 1.20 6 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATAATAATATGGGCAATGAGCATCT.................................................................................................................................................... 25 0 11 1.18 13 4 4 0 4 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAAGCATACTTGCAGCTCTAGAGT...... 24 0 6 1.17 7 1 1 0 2 1 0 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................................................GACAAGCATACTTGCAGCTCTAGAGT...... 26 0 5 1.00 5 0 0 4 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGATTGGTACAGGCAGACAAGCAT....................... 25 0 5 0.80 4 0 2 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGCAGAGGCTGGTATTTTTCTTATATAT............................................................................. 28 0 5 0.80 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................CAATTTCCCATATGATCTAAGCAACTTT........................................................................................................................ 28 0 7 0.71 5 1 0 1 2 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................TCCGTCGCAGAGGCTGGTATT......................................................................................... 21 0 5 0.60 3 0 0 0 0 0 0 2 0 0 0 1 0 0 0
.......................................................................................................AATTTCCCATATGATCTAAGCAACTTT........................................................................................................................ 27 0 9 0.44 4 1 0 2 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCAAGCATACTTGCAGCTCTAGAGT...... 25 1 7 0.43 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGGCATGCGCACTCACAATAAT........................................................................................................................................................................................... 22 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACGCAGAGGCTGGTATTTTTCTTATATAT............................................................................. 29 1 5 0.40 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACTAGCTCTCAGCTTGATTGGTACA.................................... 26 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGAGGCTGGTATTTTTCTTATATATA............................................................................ 26 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGAGGCTGGTATTTTTCTTATATAT............................................................................. 25 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGCAGAGGCTGGTATTTTTCTTATAT............................................................................... 26 0 5 0.40 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCTCAGCTTGATTGGTAC..................................... 18 0 5 0.40 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................ATGATCTAAGCAACTTTTCATACAT................................................................................................................ 25 0 20 0.35 7 0 4 0 0 3 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATACTTGCAGCTCTAGAGTCTT... 22 0 20 0.35 7 0 0 4 0 0 3 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CATACTTGCAGCTCTAGAGTCTT... 23 0 20 0.35 7 0 1 6 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CACAAGCATACTTGCAGCTCTAGAGT...... 26 1 6 0.33 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGCAGACAAGCATACTTGCAGC.............. 22 0 6 0.33 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
............................................................................................................................................................................................................................CAAGCATACTTGCAGCTCTAGAGTC..... 25 0 6 0.33 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
.....................................................................................................................TCTAAGCAACTTTTCATACATTGTC............................................................................................................ 25 0 20 0.30 6 0 0 0 0 6 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGACAAGCATATTTGTAGCTCTAGAGT...... 27 2 14 0.29 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGATCTAAGCAACTTTTCATACATTGT............................................................................................................. 28 0 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCATACTTGCAGCTCTAGAGT...... 21 0 20 0.25 5 0 0 0 0 3 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................CAGACAAGCATACTTGCAGCTCTAGAGTCTT... 31 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTAGCTCTCAGCTTGATTGGTACAGGC................................. 27 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGTACTATAACTAGCTCTCAGCTTG............................................. 25 0 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................TTCATTGGTACAGGCAGACAGGCAT....................... 25 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGCAGAGGCTGGTATTTTTCTTAT................................................................................. 24 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACAAGCATACTTGCAGCTCTAGAGTCT.... 28 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTAGCTCTCAGCTTGATTGGTACA.................................... 24 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TTGGTACAGGCAGACAAGCAT....................... 21 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGGTACAGGCAGACAAGCATACTT................... 24 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CTTGGCATGCGCACTCACAAT.............................................................................................................................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AACTAGTACTATAACTAGCTC..................................................... 21 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................CTATAACTAGCTCTCAGCTTGATTGGT....................................... 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GATTGGTACAGGCAGACAAGCAT....................... 23 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................ATGCGCACTCACAATAATCAATACAAT.................................................................................................................................................................................. 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CAGAGGCTGGTATTTTTCTTATATAT............................................................................. 26 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGACAAGCATACTTGCAGCTCTAGAGTCTT... 30 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCCGTCGCAGATGCTGGTATTT........................................................................................ 22 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................ACATTGTCCGTCGCAGAGGCT............................................................................................... 21 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................GGGCTGGTATTTTTCTTAT................................................................................. 19 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAAGCATACTTGCTGCTCTAGAGT...... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAGCTCTCAGCTTGATTGGTACA.................................... 23 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATTTTCCATATGATCTAAGCAACTTT........................................................................................................................ 27 1 15 0.20 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACTAGCTCTCAGCTTGATTGGT....................................... 23 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAAGCATACTTGCAGCTCTAGAGTCTT... 28 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TTGGCATGCGCACTCACAATA............................................................................................................................................................................................. 21 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GATTGGTACAGGCAGACAAGCATA...................... 24 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGATTGGTACAGGCAGACAAGCATA...................... 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................CCGTCGCAGAGGCTGGTATTT........................................................................................ 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TACATTGTCCGTCGCAGAGGC................................................................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATAACTAGCTCTCAGCTTGATTGGTA...................................... 26 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CAGAGGCTGGTATTTTTCTTA.................................................................................. 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................TCCGTCGCAGAGGCTGGTATTT........................................................................................ 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTCTTATATATAAGAACTAGTACTAT.............................................................. 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................TGGCATGCGCACTCACAATAATCAAT....................................................................................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AACTAGCTCTCAGCTTGATTGGTACAG................................... 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATAAGCATACTTGCAGCTCTAGAAT...... 25 2 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGCAGCTCTAGAGT...... 15 0 20 0.20 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0
................................................................................................................................................................................................AGCTCTCAGCTTGATTGGTACAGGCAG............................... 27 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGATTGGTACAGGCAGACAAGCATAC..................... 27 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TAAGCAACTTTTCATACATTGTCCGT......................................................................................................... 26 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCTCAGCTTGATTGGTACA.................................... 19 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................GATTGGTACAGGCAGACACGCAT....................... 23 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TCCGTCGCAGGGGCTGGTATT......................................................................................... 21 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................CCGTCGCAGAGGCTGGTATTTTTCT.................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTCTTATATATAAGAACTAGTACT................................................................ 25 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACTAGTACTATAACTAGCTCTCAGCTT.............................................. 27 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTTTCTTATATATAAGAACTAGTACT................................................................ 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................AATACAATATCATATAAT........................................................................................................................................................................ 18 0 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................TAATAATATGGGCAATGAGCATCT.................................................................................................................................................... 24 0 16 0.19 3 1 0 0 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AACAAGCATACTTGCAGCTCTAGAGT...... 26 1 11 0.18 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGTACAGGCAGACAAGCATACTTGC................. 25 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TGGCATGCGGACTCA.................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGCATACTTGCAGCTCTAGAGT...... 23 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ACAGGCAGACAAGCATACTTGCAGC.............. 25 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACAAGCATACTTGCAGCTCTAGAG....... 25 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................GGTACAGGCAGACAAGCATAC..................... 21 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTACAGGCAGACAAGCATACTT................... 22 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGACAAGCATACTTGCAGCTCTAGAG....... 26 0 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................TATCATACTTGCAGCTCTAGACTCTT... 26 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TACAGGCAGACAAGCATACTT................... 21 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................ATTTCCCATATGCTCTAAGCAACTTT........................................................................................................................ 26 1 20 0.15 3 0 0 0 0 1 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TACAAGCATACTTGCAGCTCTAGAGT...... 26 1 14 0.14 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGGCTGCTATTTTTCTTATATATA............................................................................ 25 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TCGCAGAGGCTGGTAT.......................................................................................... 16 0 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAACCATACTTGCAGCTCTAGAGTTTC... 28 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAAGCATATTTGCAGCTCTAGAGT...... 25 1 14 0.14 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTCTCAGCTTGATTGCT....................................... 17 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TCAATTTCCCATATGATCTAAGCAACTTT........................................................................................................................ 29 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCATACTTGCAGCTCTAGAGT...... 22 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGACAAGCATACTTGCAGCTCTAGAGT...... 28 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TCTCAATTTCCCATATGATCTAAGCA............................................................................................................................. 26 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCAGGCAGACAAGCATACTTGC................. 22 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................TGACAAGCATACTTGCAGCTCTAGAGTC..... 28 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CAATTTCCCATATGATCTAAGCAACT.......................................................................................................................... 26 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACAAGCATATTTGTAGCTCTAGAGT...... 26 2 17 0.12 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AACAGGCAGACAAGCATACTTGCAGC.............. 26 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GACAAGCATACTTACAGCTCTAGAGT...... 26 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTCTCAGCTTGATGGCT....................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGACAAGCATACTTGCAGCTCTAGAGT...... 27 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAAGAGGCTGATATTTTTCTTATATA.............................................................................. 26 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GATAAGCATACTTGCAGCTCTAGAAT...... 26 2 19 0.11 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCATACTTGCAGCTCTAGAGTCTT... 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0
.................................................................................................................................................................................................................................ATACTTGCAGCTCTAGAGT...... 19 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTTGCAGCTCTAGAGTCT.... 18 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..................................................................................................................TGATCTAAGCAACTTTTCATACA................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TAAGCAACTTTTCATACATTGTCCGTC........................................................................................................ 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGATCTAAGCAACTTTTCATACA................................................................................................................. 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTAGATTGGTACAGGCAGACACGCAT....................... 26 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTAAGCAACTTTTCATACATTGT............................................................................................................. 23 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
...............................................................................................................................................................................................................TGGTACAGGCAGACACGCAT....................... 20 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTTCCCATATGATCTAAGCAACTT......................................................................................................................... 25 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGATCGGTACAGGTAGACAAGC......................... 23 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGACAAGCATACTTGCAGCTCTAGAGA...... 27 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TCGCGGAGGCTGGTATGTT....................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................CAAGCATACTTGCAACTCTAGAGT...... 24 1 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................GACAAGCATATTTGCAGCTCTAGAGT...... 26 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATCAAGCATACTTGCAGCTCTAGAGT...... 26 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATAATAATATGGGCAATGAGC........................................................................................................................................................ 21 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTTACCATATGATCTAAGCAACTTT........................................................................................................................ 26 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATAATAATATGGGCAATGAGCAT...................................................................................................................................................... 23 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ATACTTGCAGCTCTAGAGTCTTT.. 23 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGACAAGCATATTTGTAGCTCTAGAGT...... 28 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATGGTACAGGCAGACACGCAT....................... 21 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTCAAGCATACTTGCAGCTCTAGAGT...... 27 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGACAAACATACTTGTAACTCTAGAGT...... 27 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCATACATTGTCCGTC........................................................................................................ 16 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................ATCTAAGCAACTTTTCATACATTGTCCGTC........................................................................................................ 30 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGCAACTTTTCATACATTATCCGT......................................................................................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TGATCTAAGCAACTTT........................................................................................................................ 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCAACTTTTCATACATTGTCCGTC........................................................................................................ 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TGATCTAAGCAACTTTTCATACATTGTC............................................................................................................ 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGCAACTTTTCATACATAGTCCGT......................................................................................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................ATAATATGGGCAATGAGCATCT.................................................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAAGCATACTTGCAGCTCTAGAAT...... 24 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAACTAGTAGTATAA............................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACAAGTATACTTGCCGCTCT........... 20 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCCCATATGATCTAAGCAACTTT........................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................ATTTCCCATTTGTTCTAAGCAACTTT........................................................................................................................ 26 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CATTGGTACAGGCAGACAGGCATACT.................... 26 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................CTAAGCAACTTTTCATACATTGTCCGGC........................................................................................................ 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TGATCTAAGCAACTTTTCATACAT................................................................................................................ 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................GTAAGCAACTTTTCATACATTGTCCGTC........................................................................................................ 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AATACTTGCAGCTCTAGAGTCTT... 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GCAACTTTTCATACATTGTC............................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................TACTTGCAGCTCTAGAGTCTT... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................AAGCAACTTTTCATACATTGT............................................................................................................. 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCATACTTGCAGCTCTAGAGTCT.... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................TAATATGGGCAATGAGCATCT.................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................TTTCCCATATGATCTAAGCAACTT......................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGATCTAAGCAACTTTTCATACATT............................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGCAACTTTTCATACATTGTCCGGC........................................................................................................ 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTTGCAGCTCTAGAGT...... 16 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AACAAGCATATTTGCAGCTCTAGAGT...... 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTGCAGCTCTAGAGTCTT... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................GATCTAAGCAACTTTTCATACATT............................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................ATTTCCCATATGATCTGAGCAACTTT........................................................................................................................ 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TACAAGCATATTTGCAGCTCTAGAGT...... 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGCAGCTCTAGAGTCTT... 17 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................ATGAGCGTCTCAATTTCCCATATGAT.................................................................................................................................... 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:1069734-1069983 - dsi_3620 AACTTTATAAAAATG----AGTTATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGCGTGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TA-GTA----TATTATTATACCCGTTACTCGTA---------------GAGT-TAAAGGGTATACTAGATTCG--TTGA-------AAAGTATGTAACAGGC-------AGCGTCTCCGACCATAAAAAGAATATATATTCTTGATCATG--ATATTGATCGAGAGTCGAACTAACCAT----GTCCGTCTGTTCG--------TATGAACGTCGAGATCT-CAGAAACT
droSec2 scaffold_71:82165-82414 - dse_1539 AACTTTATAAAAATG----AGTTATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGCGTGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TA-GTA----TATTATTATACCCGTTACTCGTA---------------GAGT-TAAAGGGTATACTAGATTCG--TTGA-------AAAGTATGTAACAGGC-------AGCGTCTCCGACCATAAAAAGAATATATATTCTTGATCATG--ATATTGATCGAGAGTCGAACTAACCAT----GTCCGTCTGTTCG--------TATGAACGTCGAGATCT-CAGAAACT
dm3 chr3LHet:598978-599196 + AACTTTATAAAAATG----AGTTATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGCGTGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TT-ATA----TATTATTATACCCGTCACTCATA---------------GAGT-AAAAGGGTATACTAGATTCT--TC--------------------------GAAGGCACCGTCTCCGACCATACAAAGTATATATATTTTTGATCAGG--AT-------------------AGTGAT----GTCCGTCTGTCCA--------TACGAACGTCGAGATCT-CAGGAATT
droEre2 scaffold_4516:12809-13076 + AACTTTATCAAAATC----AATTAATCAGTA--------A------------AATCATAGCCGT---------------------TTTATAA--TTGACATTCGAG-----------------GG-----------TT----------------TGGTCTCCAGAGCCGTA---TA----------------TA-TT-GTT----TTTTTTCGTAACCGTTACCCGTA---------------GAAT-AAAAGGGTATTCTAGATTCG--TTGA-------AAAATATGTAACAGGCAGAAGAAAACGTTTCCGACCATATAAAGTATATATATTCTTGATCAGG--ATCAATAGC-CGAGTCGATCTGGCCAT----GTCCGTCTGTCCG--------TATGAACACCTCGATCT-TAGGAACT
droYak3 v2_chrUn_430:1002-1252 + AATTAAATTATATTG------ATATTTAAAA-A-----AA------------TAATATAA-------------------------------GCTTGA------GTATT----------------------------TTTA----------A---A-------------------TAC----TTATTCT----TA-TA---A----TATTATTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATACTAGATTCG--TTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGG--ATCAGTAGC-CGAGTCGATCTGGCCAT----GTCCGTCTGTCTGTCCG----TATGAACGTCGAGATCT-CAGGAACT
droEug1 scf7180000408804:23924-24190 + TTT---ATAAATAT-----AATCAGTTATAT-C-----AT---TTA--------GTATA-GAAT---------------------CCAGTAGGAATT------GTGAT----------------------------TAC-----------A---T-------------------TAGTTCCA-----A----TA-TGGAAGCGATTGTTTTTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATACTAGATTCG--TTGA-------AAAGAATGTAACAGATAGAA-GAAGCGTTTCTGAACATATAAAGTATATATATTCTTGATCAGG--ATTAATAGC-GAAGTCGATTGAGCCAT----GACCGTCTGTCCGTCCGTCCGTGTGAACGCTGAGATCT-CAGGAACT
droBia1 scf7180000302098:268213-268464 + AGCTTTGGCAAGCCG----AATTTTCTATAC-C------T------------TTGCA-----GG---------------------TCGTTCCCATGA------GGGCA----------------------------TT----------------TTATGTT-------------CAG----A----------GC-TT-TCC----GATTTTTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATACTAGATATG--TCGA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGG--ATCACTAGC-CGAGTCGATCTAGTCAT----TTTCGTCTGTCCG--------TTTGAACGCTGAGATCT-CGGAAACT
droTak1 scf7180000411224:5114-5361 - AATATAAAAATAATT----TGTAATTTGTAT-T-----CA--------------------------------------------------------------------TTATAAATATATATATGTGGGGCTA---TGTA----------GGGGT-------------------TA----------------TA-TC-ATT----CTTAGTTATGCCCGTTACTCGTA---------------GAGT-AAAAGGGTATATTAGATTCG--TGCA-------AAAGTATGTAACAGGTAGAAGGAAGCTTTTCCGACCCTATAAAGTATATATATTCTTGATCAGG--GTCACTAGC-CGAGTCGATCTAGCCAT----GTCCGTCTG------------TATGAACGCTGAGATCT-CGGAAACT
droEle1 scf7180000491271:159255-159513 - TGTTTCATTTTATTTTGTT--AGAGTCAAAC-C-----CA--------------------------------------------------------------------TTTCAATTTGGCTTAGGCTCGG-TTGATAG-G----------G---T-------------------TCC----G-----G----TT-TA-ATT----CGTTTTTATACCCGTTACTCGTA---------------AAGT-AAAAGGGTATATAGTATTCG--TTGA-------AAATTATGTAACAGCTAGAAGGAAACGTTTCCGACCATATAAAATACACATATTCTTAATCAGG--ATCAATAGT-CAAGTCGATCTAGCTAT----GTCTGTCTGTCCGTCTG----TACGAACGTCGAAATCT-CGGAAACT
droRho1 scf7180000762797:847-1111 + TTT---CTAAAAATG----AAATATTTATATCGTGATTTT------------TTGTTTGCCCAA--------------ATAT---CGGAATTC----------------------------------------------C----------A---A--------------TATATTTT----G-----TTTGATATTT-TTT----GATAATTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATATTGTATTCG--TGCA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGG--ATCACTAGC-TGAGTCGATCTAGCCAT----GTCCGTCTGTCTGTCCG----TATGAACGTTGAGATCT-CGGAAACT
droFic1 scf7180000452742:13040-13276 + TTG----CAGAAATC----AAATATTTCGAACC-----AA------------ATACATAGAGGC---------------------TAAATAACATCA------AAGCC----------------------------ACAT----------A---T-------------------TAT----G-----A----TATAT-GTC----GATTTTTATACCC-----TTGCA---------------GAGC-A-AAGGGTATTATAATTTCA--TTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGC--ATCACGATC-GGAATCCAAATACATATGTGTGTACGTCTGTCTG--------TCTGTCCGTC----------------
droKik1 scf7180000300372:32635-32866 + AATTTTATGAAAATC----AGA--------C-G-----ACTATATGATATAGCTGCCATAGGAA---------------------CAGT-CGAGAAA------TTAAT----------------------------AAGA----------A---A-------------------AAA----A-----T----TATAG-CTT----CGTTGTTATACCCT-----T------------------------GCAGGGTATTATAATTTCA--GTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGC--ATTAACAGC-CGAGTCGATCTAGCCAT----GTCCGTCTGTCCG--------TCTGTCCGTC----------------
droAna3 scaffold_13082:1092558-1092791 - TTA----TTAGACTC----AGTAAT-C-GCT-C-----AT------------CTTCCCATTGAA---------------------CTTTGTGAATGA------AC---------------------------------------------A---T-------------------TCT----G-----C----TATTA-GTA---CACTTTTTATACCCT-----TGC----------------------AGAGGGTATTATAATTTGG---TCA-------AAAATGTGGAACGCAGTGAATGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGG--GTCACCTCC-TGAGTCGATATAAGCAT----GTCCGTCTGTCCG--------TCTGTCTGTCGGTTTCTACGCAAACT
droBip1 scf7180000395520:32207-32432 - AAACAAAAATATT------TGGTATTTAGAG-G-----AT------------TTCTAGTAGCTA--------------A------AAGTATG---GG------GTATT----------------------------CGTA----------G---T-------------------AAT----T-----T----AC-CT-ATA----TATTTTTATACCCT-----TGC----------------------AGAGGGTATTATAATTTTG--GTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGG--ATCACCTCC-TGAGTTGATATGAGCAT----GTCCGTCTGTCCG--------TCTGTCCGTC----------------
dp5 Unknown_group_649:4731-4981 + AACATTAAATACA------AATTAGTTATTA-A-----AC------------CTAAAGTAAATA--------------A---AAACCCCACATATAT------GTATA----------------------------TA----------------T-------------------TAT----A--TTCT----TA-CT-ATA---TAGTTTTTATACCCGGTACTCGAA---------------GAGT-ATAGGGGTATATTAGATTTGTGGTGA--AAATGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGC--ATCAATAGC-CGAGTCGATTGAGACAT----GTCTGTCTGTCCG--------TCTGTCCGTC----------------
droPer2 scaffold_23:1129845-1130086 - TTT------------------------GGAA-C-----TC------------TTG-----GAAG---------------------CCATGCGCAAGT------GGGTT----------------------------TTC-----------A---T-------------------TAT----A----------GA-TA-ACA----CGTTTTTATACACGTTCCTCGAA---------------GAGT-TAAAGGATATATTAGTTTTG--TGGTGCAAGTGAATGTGTGTTCCACCCAGAAGGAAGCGTTTCCGACACCATTAAGCATATATATTCTTGATCAGCCAATCAATAGG-CGATTTGATATAGCCAT----GTCTGTCTGTCCGTCTT----GATGAGCGCCTAGATCT-CAGAGACT
droWil2 scf2_1100000004949:1717311-1717570 - ACTTTA-TTTAAGTT----GACTGTTAGAAAAC-----GT------------TTGTATAGGGAAAAGAAATTGACTGT-------TT-----TAAGA------G-GT-------------------------------------------T---T-------------------TCC----G----GC----AA-TT-ATT----TATTGTTATACCATACACCCATA---------------GGGT-GAAATGGTATATTAAAGTCG--CCAA-------AATGTATGTAACAGGCAGAAGGAAGCAACTCCGACCCCACAAAGTATATATATTCTTGATCAGG--ATCAACAAC-CGAGTCGATCTAGCCAT----GTCCGTCTGTCCG--------TATGAACACCTAGATCT-CGGAGACT
droVir3 scaffold_12822:3840589-3840858 + AAGTGCGTAAAGAAA----ACTGTTCCAGAT-G-----AT------------TTGTATAAGCAA--------------A----------------AA------GTAGT----------------------------ATTA----------T---T-------------------TAT----A--TTTT----TT-CT---A---TTCTTTTTATACCTTGAACCCAAATCATCATATCAAAATGGGT-ATAAGGGTATATTGTAATTG--TGCAAAATCAAAATGTATGTAACAGGCAGAATGAAGCATCTCCGACCCCATAAAGGATATATATTCTTGATCAGC--ATCAATAGC-CCAGTCGATCTAGCCAT----GTCCGTCTGTC-G--------TGTGAACGCAAGGATCT-CAAAACAT
droMoj3 scaffold_6500:28380495-28380761 - AATATTTTAAAAAAG----TACTAATTCAAC-T-----AT------------TTTTATAAATAT---------------------TC--------------------------------------------------TCAACTTTACTAAA---T-------------------TATTTT-A-----A----AT-AT-ATT----CGTTTTTATACCCTGAACCCATT---------GAAAATAGGAAATCAGGGTATAATGGTTTTG--T-GA-------AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACTCCATAAAGTATATATATTCTTGATCAGA--ACGACGAGC-TGAGTCGATATAGCCCT----GTCCGTCTGTCCGTCCGTTCGTATGAGCAAAAGGATCT-CAGAAGAG
droGri2 scaffold_15110:7802710-7802947 + AAATTAATATAAATG------TAATTTGTAC-G-----CT-T----------TTTAATAA------------------------------------A------ATGAA----------------------------ATCA----------A---T--------------AATATTAT----G-----C----ATAAA-ATC---GAATGTTTATACCCTGAACCCATA---------AAAAACGGGTAAAAAGG-------------G--TGCA-------AATGTATGTAACAGGCAGAAAGAAGCATCTCCGACCTCATAAAGTGTATATATTCTTCATCAGG--GTCAACAGC-CGAGT---TATAGCCAT----GTCCGTCCGTCTC--------TATGAACACTCAGATCT-CAGAGACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACTTTATAAAAATG----AGTTATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGCGTGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TA-GTA----TATTATTATACCCGTTACTCGTA---------------GAGT-TAAAGGGTATACTAGATTCG--TTGA-------AAAGTATGTAACAGGC-------AGCGTCTCCGACCATAAAAAGAATATATATTCTTGATCATG--ATATTGATCGAGAGTCGAACTAACCAT----GTCCGTCTGTTCG--------TATGAACGTCGAGATCT-CAGAAACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGA..............2667.83470020002013426000000
........................................................................................................................................................................................................................................................................TTCG--TTGA-------AAAGTATGTAACAGGC-------.........................................................................................................................24204.70940002500069000000000
...........................................................................................................................................................................................................................................................AGGGTATACTAGATTCG--TTGA-------AAAG............................................................................................................................................25202.5551000000051000000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGAGA............2862.001200100071111000000
...........................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTTCG--------TATGAACGTCGAGA............2661.17700000001312000000
............................................................................................................................................................................................................................................................GGGTATACTAGATTCG--TTGA-------AAA.............................................................................................................................................23200.9018000000018000000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACG..................2260.83500500000000000000
........................................................................................................................................................................................................................................................................TTCG--TTGA-------AAAGTATGTAACAGGC-------AG.......................................................................................................................26200.6513000000000000130000
........................................................................................................................................................................................................................................................................TTCG--TTGA-------AAAGTATGTAACAGGC-------A........................................................................................................................25200.6012000000012000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGAGATCT-CAGAAAC.20200.6012000012000000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCATG--ATATTGATCGAGAGTCGAAC..........................................................2950.60300000021000000000
......................TATTTGGAC-C-----AT------------TTGCATAAG............................................................................................................................................................................................................................................................................................................................................................................2150.40220000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AACCAT----GTCCGTCTGTTCG--------TA........................2150.40210000010000000000
.............................................................................................................................................................................................................................................................................................TATGTAACAGGC-------AGCGTCTCCGAC.............................................................................................................2450.40200000001001000000
....................................................................................................................................................................................................................................................................................................................................................TCATG--ATATTGATCGAGAGTCGAAC..........................................................2550.40200000011000000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------TATGAA....................2650.40200000010001000000
.................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-------AGCGTCTC.................................................................................................................2550.40200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGATCGAGAGTCGAACTAACCAT----G..............................................2650.40200100001000000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------TATGAACG..................2850.40200000001001000000
.................................................................................................................................................................................................................................................................................................................................................TGATCATG--ATATTGATCGAGAGTCGAAC..........................................................2850.40200000010000010000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTC................2460.33200100000001000000
...................................................................................................................................................................................................................................................................................................................................................................................CAT----GTCCGTCTGTTCG--------TATGAACGT.................2560.33200200000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTTCG--------TATGAACGTCGA..............2560.33200000000101000000
...............................................................................................................................................................................................................................TCGTA---------------GAGT-TAAAGGGTATACTAGA.................................................................................................................................................................2580.25200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TATGAACGTCGAGA............1790.22200000010010000000
.......................................................................................................................................................................................................................................................................................................................................................TG--ATATTGATCGAGAGTCGAACTAACCA....................................................2850.20100000010000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCATG--ATATTGATCGAGAGTCGA............................................................2750.20100000010000000000
...........................................................................................................................................................................................................................................................................................AGTATGTAACAGGC-------AGCGT....................................................................................................................1950.20100000100000000000
.......................................................................................................................................................................................................................................................................................................................................................TG--ATATTGATCGAGAGTCGAAC..........................................................2250.20110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTAACCAT----GTCCGTCTGTTCG--------TATGA.....................2750.20100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................CGAACTAACCAT----GTCCGTCTGT.....................................2250.20100001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------TATGA.....................2550.20100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................ATCGAGAGTCGAACTAACCAT----...............................................2150.20110000000000000000
........................TTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTA...............................................................................................................................................................................................................................................................................................................................................2750.20100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................AACCAT----GTCCGTCTGTTCG--------G.........................2050.20110000000000000000
.......................ATTTGGAC-C-----AT------------TTGCATAAGG...........................................................................................................................................................................................................................................................................................................................................................................2150.20110000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCATG--ATATTGATCGAGAGT...............................................................2750.20100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------T.........................2150.20110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------TATGAAC...................2750.20100000010000000000
..................................................................................................................................................................................................................................................................................................................................................GATCATG--ATATTGATCGAGAGTGCC............................................................2550.20100000000001000000
..............................................................................................................................................................................................................................................................................................................................................TCTTGATCATG--ATATTGATCGAGAGT...............................................................2650.20100000000001000000
.................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-------AGCGTC...................................................................................................................2350.20100000000001000000
.................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-------AGCGTCTCC................................................................................................................2650.20100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------TATGAACGTT................3050.20100000001000000000
...TTTATAAAAATG----AGTTATTTGGAC-C-----...................................................................................................................................................................................................................................................................................................................................................................................................2550.20100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TAACCAT----GTCCGTCTGTTCG--------TATGAACGT.................2950.20100000000100000000
........................................................ATAAGGAA---------------------CCGTACGCGTGA------G.................................................................................................................................................................................................................................................................................................................................2150.20100000000001000000
........................................................................................................TGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TA-GT.................................................................................................................................................................................................................................2150.20110000000000000000
........................................................................................................................................................................................................................................................TAAAGGGTATACTAGATTCG--TTGA-------AAAGTA..........................................................................................................................................30100.20200000001100000000
........................................................................................................................................................................................................................................................................................................................................................G--ATATTGATCGAGAGTCGAACT.........................................................2250.20110000000000000000
................................................................................................................................................................................................................................................................................................GTAACAGGC-------AGCGTCTCCGACCATA.........................................................................................................2550.20100000000001000000
......................................................................................................................................................................................................................................................................................................................TCCGACCATAAAAAGAATATATATTC.........................................................................................2650.20100000001000000000
............................................................................................................................................................................................................................................................................................................................................................TATTGATCGAGAGTCGAACTA........................................................2150.20100001000000000000
........................TTTGGAC-C-----AT------------TTGCATAAGGAA---------------------C...................................................................................................................................................................................................................................................................................................................................................2350.20100100000000000000
...................AGTTATTTGGAC-C-----AT------------TTGCAT...............................................................................................................................................................................................................................................................................................................................................................................2150.20100000000000010000
..........................TGGAC-C-----AT------------TTGCATAAGGAA---------------------C...................................................................................................................................................................................................................................................................................................................................................2150.20100000000000010000
.................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-------AGCGTCTCCGA..............................................................................................................2850.20100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................TCGAGAGTCGAACTAACCAT----GTCCGTC........................................2750.20100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................AACCAT----GTCCGTCTGTTCG--------T.........................2050.20110000000000000000
....................................................................................................................................................................................................................................................................................................................................................TCATG--ATATTGATCGAGAGTCGAACT.........................................................2650.20100000001000000000
................................................................................................................................................................................................................................................................................................................................................................GATCGAGAGTCGAACTAA.......................................................1850.20110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTGATCGAGAGTCGAACTAACCAT----GTC............................................2750.20100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTTCG--------TATGAACGTCGAG.............2360.17100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGAG.............2760.17100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTTCG--------TATGAACGTC................2260.17100010000000000000
........................................................................................................................................................................................................................................................TAAAGGGTATACTAGATTCG--TTGA-------A...............................................................................................................................................25120.17200000000200000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGG..............2660.17100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGT.................2360.17100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTTCG--------TATGAACGTCGA..............2360.17100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTTCG--------TATGAACGTCGAGA............2760.17100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCTGTTCG--------TATGAACGT.................1860.17100000000001000000
.........................................................................................................................................................................................................................................................................TCG--TTGA-------AAAGTATGTAACAGGC-------A........................................................................................................................24200.15300000000030000000
.................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACAGGC-------AG.......................................................................................................................19200.15300000000003000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCT-CAGAAACT16200.15300000001002000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGAGG............2870.14100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TATGAACGTCGAGATCT-CAG.....2370.14100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTTCG--------TATGAACGTCGAGATCT-A.......2470.14100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTCG--------TATGAACGTCGAGATCT-........2180.13100100000000000000
...............................................................................................................................................................................................................................TCGTA---------------GAGT-TAAAGGGTATACTAGATT...............................................................................................................................................................2780.13100000000001000000
...................................................................................................................................................................................................................................A---------------GAGT-TAAAGGGTATACTAGATTCG--T..........................................................................................................................................................2680.13100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTA................2480.13100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTCG--------TATGAACGTCGAGATC..........2080.13100000000010000000
.................................................................................................................................................................................................................................GTA---------------GAGT-TAAAGGGTATACTAGA.................................................................................................................................................................2390.11100000000001000000
....................................................................................................................................................................................................................................................AGT-TAAAGGGTATACTAGATTCG--TTG........................................................................................................................................................2690.11100000000000010000
....................................................................................................................................................................................................................................................................TAGATTCG--TTGA-------AAAGTATGTAACAGGC-------.........................................................................................................................28200.10200000000200000000
...............................................................................................................................................................................................................................................................TATACTAGATTCG--TTGA-------AAAGTATG........................................................................................................................................25200.10200000000000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCT-CAGAAAC.15200.10200000011000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTCG--------TATGAACGTCGAGATCT-A.......22100.10100000001000000000
............................................................................................................................................................................................................................................................GGGTATACTAGATTCG--T..........................................................................................................................................................17200.10200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTCG--------TATGAACGTCGA..............16110.09100000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCGAGATCT-CAGAAACT24110.09100000000010000000
......................................................................................................................................................................................................................................................T-TAAAGGGTATACTAGATTCG--T..........................................................................................................................................................22110.09100000000001000000
........................................................................................................................................................................................................................................................TAAAGGGTATACTAGATTCG--TTGA-------AA..............................................................................................................................................26120.08100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTTCG--------TATGAACGTT................20140.07100000000001000000
.............................................................................................................................................................................................................TATTATTATACCCGTTACTC........................................................................................................................................................................................................20150.07100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTTT...............25190.05100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CG--------TATGAACGTCGAGATCT-CAG.....22200.05100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCT-CAGAAACT18200.05100100000000000000
..............................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTAACAGGC-------A........................................................................................................................21200.05100000000001000000
..........................................................................................................................................................................................................................................................AAGGGTATACTAGATTCG--TTGA-------AAAGT...........................................................................................................................................27200.05100000001000000000
..........................................................................................................................................................................................................................................................AAGGGTATACTAGATTCG--TTG........................................................................................................................................................21200.05100000000000001000
......................................................................................................................................................................................................................................................................GATTCG--TTGA-------AAAGT...........................................................................................................................................15200.05100000000001000000
...................................................................................................................................................................................................................TATACCCGTTACTCGTA---------------GAGT-.................................................................................................................................................................................21200.05100000010000000000
droSec2
AACTTTATAAAAATG----AGTTATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGCGTGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TA-GTA----TATTATTATACCCGTTACTCGTA---------------GAGT-TAAAGGGTATACTAGATTCG--TTGA-------AAAGTATGTAACAGGC-------AGCGTCTCCGACCATAAAAAGAATATATATTCTTGATCATG--ATATTGATCGAGAGTCGAACTAACCAT----GTCCGTCTGTTCG--------TATGAACGTCGAGATCT-CAGAAACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................TTCG--TTGA-------AAAGTATGTAACAGGC-------AGC......................................................................................................................2712.0022000
............................................................................................................................................................................................................................................................................................GTATGTAACAGGC-------AGCGTCTCCGACCAT..........................................................................................................2811.0010010
.......................ATTTGGAC-C-----AT------------TTGCATAAGG...........................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................CGAGAGTCGAACTAACCAT----GT.............................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................TTGATCGAGAGTCGAACTAACCAT----...............................................2411.0011000
.......................ATTTGGAC-C-----AT------------TTGCATAAG............................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGAGA............2840.7532010
..................................................................................................................................................................................................................................................................................................................................................................................CCAT----GTCCGTCTGTTCG--------TATGAACGT.................2630.3311000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTC................2460.3322000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCTGTTCG--------TATGAACGTCGAGATC..........2540.2511000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTTCG--------TATGAACGTCGAGA............2440.2511000
........................................................................................................................................................................................................................................................................TTCG--TTGA-------AAAGTATGTAACAGGC-------.........................................................................................................................24200.2040004
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTTCG--------TATGAACGTCGA..............2560.1710001
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCGA..............2660.1710100
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACGTCG...............2560.1711000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTTCG--------TATGAACGTCG...............2460.1711000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTTCG--------TATGAACG..................2280.1310001
....................................................................................................................................................................................................................................................AGT-TAAAGGGTATACTAGATT...............................................................................................................................................................2190.1111000
............................................................................................................................................................................................................................TACTCGTA---------------GAGT-TAAAGGGT.........................................................................................................................................................................20100.1010010
........................................................................................................................................................................................................................................................................TTCG--TTGA-------AAAGTATGTAAC....................................................................................................................................20200.0511000
................................................................................................................................................................................................................................................................ATACTAGATTCG--TTGA-------AAAGT...........................................................................................................................................21200.0510010
...............................................................................................................................................................................................................................................................TATACTAGATTCG--TTGA-------AAAG............................................................................................................................................21200.0510100
......................................................................................................................................................................................................................................................................................................................................................................................................G--------TATGAACGTCGAGATCT-CA......20200.0510100
dm3
AACTTTATAAAAATG----AGTTATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGCGTGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TT-ATA----TATTATTATACCCGTCACTCATA---------------GAGT-AAAAGGGTATACTAGATTCT--TC--------------------------GAAGGCACCGTCTCCGACCATACAAAGTATATATATTTTTGATCAGG--AT-------------------AGTGAT----GTCCGTCTGTCCA--------TACGAACGTCGAGATCT-CAGGAATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................CA--------TACGAACGTCGAGATCT-CAGGAAT.26161.0061000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000742012000000040000000204012640000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGTCGAGATCT-CAGGAAT.22156.0056000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000773152400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-CAGG....25139.00390000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000010000000000000000000000000000000000000000000000000000043302010100000000001403220000000000000000000000000000000000000000000000000000000000000000000300000000301000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................TTTGATCAGG--AT-------------------AGTGAT----GTC............................................21132.00320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300103000000000000000000050000020000000000000000000120000000000000000000000000000000000001000000000000000000000000000000100000000001100000010000101000000000020011000040
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--AT-------------------AGTGAT----GTCCGT.........................................23131.003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000200000000000000000000000000000000000000100000022000000001000000000100100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--AT-------------------AGTGAT----GTC............................................20127.00270000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020006000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000000312000000000000001110000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-CAGGAAT.28126.00260000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000003300300000100000000020002410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................TACGAACGTCGAGATCT-CAGGAAT.24124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000011000000003141700000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200100000
................................................................................................................................................................................................................................................................................................................................................................................................................ACGAACGTCGAGATCT-CAGGAAT.23120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050401100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TACGAACGTCGAGATCT-CAGG....21218.503700000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000002011000000000000000000000200210000000000000000000000000000000000000000000000100000000000000000000000230200000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--AT-------------------AGTGAT----GTCCGTC........................................24118.00180000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000008040000002010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-CAGGA...26118.00180000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000003014100000000000000011101100000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCGAGATCT-CAGGAAT.21817.75142000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302819293500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-........21114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002010202000100000000000100200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--AT-------------------AGTGAT----GTCC...........................................21113.00130000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000002100000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000200000000200000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CCA--------TACGAACGTCGAGATCT-CAGGAAT.27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002110100000000000000000103200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TATACTAGATTCT--TC--------------------------GAAGGC.........................................................................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001400000100000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTTTGATCAGG--AT-------------------AGTGAT----GT.............................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000110000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CA--------TACGAACGTCGAGATCT-CAGGAA..25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000030100210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................ATAAGGAA---------------------CCGTACGCGT..........................................................................................................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--AT-------------------AGTGAT----GTCCGTCT.......................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000203002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-CAGGAA..2718.0080000000000000000000000000000000000000000000000000000000001000000000000000000002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CCA--------TACGAACGTCGAGATCT-CAGGAA..2617.0070000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................AGATTCT--TC--------------------------GAAGGCACCGTC...................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TACGAACGTCGAGATCT-CAGGA...2226.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000002002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTCCA--------TACGAACGTCGAGATCT-CAGG....2716.0060000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................TGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-TT-ATA----............................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
..................................................................................................................................................................................................................................................................................................................................................................................TGAT----GTCCGTCTGTCCA--------TACG......................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TACTAGATTCT--TC--------------------------GAAGGCACCGTC...................................................................................................................2515.0050000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-C.......2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000010000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TATACTAGATTCT--TC--------------------------GAAGGCACCGTC...................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CCA--------TACGAACGTCGAGATCT-CAGG....2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ACGAACGTCGAGATCT-CAGGAA..2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTCCA--------TACGAACGTCGAGAT...........2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000
.............................AC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGC............................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................TGTCCA--------TACGAACGTCGAGATCT-CAGGAA..2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CA--------TACGAACGTCGAGATCT-CAGGA...2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAGGGTATACTAGATTCT--TC--------------------------G..............................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
.......................................T------------TTGCATAAGGAA---------------------CCGTACGCG...........................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
......................TATTTGGAC-C-----AT------------TTGCATAAG............................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................ATTTTTGATCAGG--AT-------------------AGTGAT----...............................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
..............................................................................................................................................................................................................................................................................................................................................TTTTGATCAGG--AT-------------------AGTGAT----GTCCGTC........................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TTATAAAAATG----AGTTATTTGG............................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010100000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGTCGAGATCT-CAGG....1933.67110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGAGATCT-CAGGAAT.2083.63290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009195500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATC..........2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--AT-------------------AGTGAT----GTCCGTCTG......................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCCA--------TACGAACGTCG...............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-CA......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGA............1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CT--TC--------------------------GAAGGCACCGTCTCCGA..............................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................TTTTGATCAGG--AT-------------------AGTGAT----GTC............................................2213.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCCA--------TACGAACGTCGAGATCT-CAG.....2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GTATACTAGATTCT--TC--------------------------GAAGGCACC......................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................TTGGAC-C-----AT------------TTGCATAAGGAA---------------------....................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CA--------TACGAACGTCGAGATCT-CA......2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
........................TTTGGAC-C-----AT------------TTGCATAAG............................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
................................C-----AT------------TTGCATAAGGAA---------------------CCGTAC..............................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000010
................................................................................................................................................................................................................................................................................................................................CAAAGTATATATATTTTTGAT....................................................................................2123.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CC..................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................TGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTACGC............................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCA--------TACGAACGTCGAGA............2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................TTTTTGATCAGG--AT-------------------AGTGAT----GTCC...........................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................TCACTCATA---------------GAGT-AAAAGGG..........................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTCT--TC--------------------------GAAGGCACCGTCTCCGACCATA.........................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
........................TTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCG.................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................ATACTAGATTCT--TC--------------------------GAAGGCA........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GAA---------------------CCGTACGCGTGA------GTGTT----------------------------A................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010
.............................................................................................................................................................................................................TATTATTATACCCGTCACTC........................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AT----GTCCGTCTGTCCA--------TACGAA....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TGA------GTGTT----------------------------ATTA----------G---T-------------------TAT----G-----T----TA-......................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CCA--------TACGAACGTCGAGATC..........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GATCAGG--AT-------------------AGTGAT----GTCCGT.........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................GATTCT--TC--------------------------GAAGGCACCG.....................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTTGGAC-C-----AT------------TTGCATAAGG...........................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................GATTCT--TC--------------------------GAAGGCACCGTCT..................................................................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CA--------TACGAACGTCGAGATCT-CAGGAATT2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GTATACTAGATTCT--TC--------------------------GAAGGCATA......................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.............................AC-C-----AT------------TTGCATAAGGAA---------------------CCGT................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GTATACTAGATTCT--TC--------------------------GAAGGC.........................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTTGATCAGG--AT-------------------AGTGAT----GTCC...........................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................TTTTTGATCAGG--AT-------------------AGTGAT----G..............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TACCCGTCACTCATA---------------GAGT-AAAAGGG..........................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................T-------------------AGTGAT----GTCCGTCTGTCCA--------TACGA.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................TATACCCGTCACTCATA---------------GAGT-.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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.....................TTATTTGGAC-C-----AT------------TTGCATAAGG...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCCGTCTGTCCA--------TACGAACGTCGAG.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CATA---------------GAGT-AAAAGGGTATACT....................................................................................................................................................................2141.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020010000
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............................................................................................................................................................................................................................................................GGGTATACTAGATTCT--TC--------------------------GAAGGCAT.......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................CT--TC--------------------------GAAGGCACCGTCTCCGACCATA.........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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..............................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCA--------TACGAACGTCGAGATC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TGAT----GTCCGTCTGTCCA--------TACGAACGT.................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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........................TTTGGAC-C-----AT------------TTGCATAAGGAA---------------------CCGTAC..............................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................AA---------------------CCGTACGCGTGA------GTGTT----------------------------AT...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCA--------TACGAACGTCG...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
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droEre2
AACTTTATCAAAATC----AATTAATCAGTA--------A------------AATCATAGCCGT---------------------TTTATAA--TTGACATTCGAG-----------------GG-----------TT----------------TGGTCTCCAGAGCCGTA---TA----------------TA-TT-GTT----TTTTTTCGTAACCGTTACCCGTA---------------GAAT-AAAAGGGTATTCTAGATTCG--TTGA-------AAAATATGTAACAGGCAGAAGAAAACGTTTCCGACCATATAAAGTATATATATTCTTGATCAGG--ATCAATAGC-CGAGTCGATCTGGCCAT----GTCCGTCTGTCCG--------TATGAACACCTCGATCT-TAGGAACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................AGG--ATCAATAGC-CGAGTCGATCTGG.......................................................25200.2550000005
..................................................................................................................................................................................................................................................................................................AACAGGCAGAAGAAAACGTTTCCG...............................................................................................................24170.0610000100
.........................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCAT----GTCCGTCTGTCCG--------TA........................28200.0511000000
....................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCAATAGC-CGAGTCGATC..........................................................24200.0510000010
...........................................................................................................................................................................................................................................................................................................................................................ATCAATAGC-CGAGTCGATCTG........................................................21200.0510000100
.............................................................................................................................................................................................................................................................................................................................................................................TCTGGCCAT----GTCCGTCTGTCC...................................21200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGCCAT----GTCCGT.........................................21200.0511000000
................................................................................................................................................................................................................................................................................................................AACGTTTCCGACCATATAAAGT...................................................................................................22200.0510000010
.....................................................................................................................................................................................................................................................................................................................................................CAGG--ATCAATAGC-CGAGTCGATCTGGCC.....................................................28200.0511000000
droYak3
AATTAAATTATATTG------ATATTTAAAA-A-----AA------------TAATATAA-------------------------------GCTTGA------GTATT----------------------------TTTA----------A---A-------------------TAC----TTATTCT----TA-TA---A----TATTATTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATACTAGATTCG--TTGA-------AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGG--ATCAGTAGC-CGAGTCGATCTGGCCAT----GTCCGTCTGTCTGTCCG----TATGAACGTCGAGATCT-CAGGAACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCC................................................................................................................26209.301860000000000186
.................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGA..............................................................................................................26203.2064000000000064
.................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCG----TATGAACGTCGAGATCT-........27201.5531000000000031
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGG--ATCAGTAGC-CGAGT...............................................................26201.0020020000000000
....................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTTTCCGACCATA.........................................................................................................28200.7014000000000014
....................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTTTCCGACC............................................................................................................25200.5511011000000000
.................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGAC.............................................................................................................27200.40800080000000
...............................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGCAGAAGG..........................................................................................................................25200.35707000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCG----TATGAACGTCGAGA............22200.35700000000007
..............................................................................................................................................................................................................................................................................................................................................TCTTGATCAGG--ATCAGTAGC-C...................................................................21200.20400400000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--ATCAGTAGC-CGAGTCGATC..........................................................28200.20400400000000
.....................................................................................................................................................................................................................................................GT-AAAAGGGTATACTAGATTCG--TTGA-------................................................................................................................................................26200.10200000020000
..........................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGG--ATCAGTAGC-CGA.................................................................27200.10202000000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--ATCAGTAGC-CGAGTC..............................................................24200.10200000000002
...................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCGTTTCCGACC............................................................................................................26200.10202000000000
.............................................................................................................................................................................................................TATTATTATACCCGTTACTCGTA---------------GAGT-.................................................................................................................................................................................27200.05100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCG----TATGAACGTCGAGATC..........28200.05100100000000
...............................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACAGGC................................................................................................................................19200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................TAGC-CGAGTCGATCTGGC......................................................18200.05100100000000
....................................................................................................................................................................................................................ATACCCGTTACTCGTA---------------GAGT-AAAAGGG..........................................................................................................................................................................27200.05101000000000
..................................................................................................................................................................................................................................................................................................................................................................................CCAT----GTCCGTCTGTCTGTCCG----TATG......................25200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGG--ATCAGTAGC-CGA.................................................................28200.05100100000000
...............................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACCATATAA......................................................................................................20200.05100000010000
....................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCAGTAGC-CGAGTCGATCTGG.......................................................27200.05101000000000
................................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACAGGCAGAAGGA.........................................................................................................................25200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................TAGC-CGAGTCGATCTGGCCAT----GTC............................................24200.05100100000000
..............................................................................................................................................................................................................................................................................................................................................TCTTGATCAGG--ATCAGTAGC-CGAG................................................................24200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................TAGC-CGAGTCGATCTGGCCAT----GTCCGTC........................................28200.05100010000000
...............................................................................................................................................................................................................................................................................................................................................................................TGGCCAT----GTCCGTCTGTCTGTCCG----TATG......................28200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTGGCCAT----GTCCGTCTGTCTGTCCG----..........................25200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGCCAT----GTCCGTCT.......................................24200.05100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCTGTCCG----TATGAACGTCGAG.............27200.05101000000000
........................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCG--TTGA-------................................................................................................................................................24200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCTGTCCG----TATG......................21200.05101000000000
.................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGACCA...........................................................................................................29200.05100000000001
..........................................................................................................................................................................................................................................................AAGGGTATACTAGATTCG--T..........................................................................................................................................................19200.05100010000000
droEug1
TTT---ATAAATAT-----AATCAGTTATAT-C-----AT---TTA--------GTATA-GAAT---------------------CCAGTAGGAATT------GTGAT----------------------------TAC-----------A---T-------------------TAGTTCCA-----A----TA-TGGAAGCGATTGTTTTTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATACTAGATTCG--TTGA-------AAAGAATGTAACAGATAGAA-GAAGCGTTTCTGAACATATAAAGTATATATATTCTTGATCAGG--ATTAATAGC-GAAGTCGATTGAGCCAT----GACCGTCTGTCCGTCCGTCCGTGTGAACGCTGAGATCT-CAGGAACTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCTTTGGCAAGCCG----AATTTTCTATAC-C------T------------TTGCA-----GG---------------------TCGTTCCCATGA------GGGCA----------------------------TT----------------TTATGTT-------------CAG----A----------GC-TT-TCC----GATTTTTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATACTAGATATG--TCGA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGG--ATCACTAGC-CGAGTCGATCTAGTCAT----TTTCGTCTGTCCG--------TTTGAACGCTGAGATCT-CGGAAACTSizeHit CountTotal NormTotal
No Reads
droTak1
AATATAAAAATAATT----TGTAATTTGTAT-T-----CA--------------------------------------------------------------------TTATAAATATATATATGTGGGGCTA---TGTA----------GGGGT-------------------TA----------------TA-TC-ATT----CTTAGTTATGCCCGTTACTCGTA---------------GAGT-AAAAGGGTATATTAGATTCG--TGCA-------AAAGTATGTAACAGGTAGAAGGAAGCTTTTCCGACCCTATAAAGTATATATATTCTTGATCAGG--GTCACTAGC-CGAGTCGATCTAGCCAT----GTCCGTCTG------------TATGAACGCTGAGATCT-CGGAAACTSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTTCATTTTATTTTGTT--AGAGTCAAAC-C-----CA--------------------------------------------------------------------TTTCAATTTGGCTTAGGCTCGG-TTGATAG-G----------G---T-------------------TCC----G-----G----TT-TA-ATT----CGTTTTTATACCCGTTACTCGTA---------------AAGT-AAAAGGGTATATAGTATTCG--TTGA-------AAATTATGTAACAGCTAGAAGGAAACGTTTCCGACCATATAAAATACACATATTCTTAATCAGG--ATCAATAGT-CAAGTCGATCTAGCTAT----GTCTGTCTGTCCGTCTG----TACGAACGTCGAAATCT-CGGAAACTSizeHit CountTotal NormTotal
No Reads
droRho1
TTT---CTAAAAATG----AAATATTTATATCGTGATTTT------------TTGTTTGCCCAA--------------ATAT---CGGAATTC----------------------------------------------C----------A---A--------------TATATTTT----G-----TTTGATATTT-TTT----GATAATTATACCCGTTACTCGTA---------------GAGT-AAAAGGGTATATTGTATTCG--TGCA-------AAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGG--ATCACTAGC-TGAGTCGATCTAGCCAT----GTCCGTCTGTCTGTCCG----TATGAACGTTGAGATCT-CGGAAACTSizeHit CountTotal NormTotal
No Reads
droFic1
TTG----CAGAAATC----AAATATTTCGAACC-----AA------------ATACATAGAGGC---------------------TAAATAACATCA------AAGCC----------------------------ACAT----------A---T-------------------TAT----G-----A----TATAT-GTC----GATTTTTATACCC-----TTGCA---------------GAGC-A-AAGGGTATTATAATTTCA--TTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATATTCTTGATCAGC--ATCACGATC-GGAATCCAAATACATATGTGTGTACGTCTGTCTG--------TCTGTCCGTC----------------SizeHit CountTotal NormTotal
No Reads
droKik1
AATTTTATGAAAATC----AGA--------C-G-----ACTATATGATATAGCTGCCATAGGAA---------------------CAGT-CGAGAAA------TTAAT----------------------------AAGA----------A---A-------------------AAA----A-----T----TATAG-CTT----CGTTGTTATACCCT-----T------------------------GCAGGGTATTATAATTTCA--GTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGC--ATTAACAGC-CGAGTCGATCTAGCCAT----GTCCGTCTGTCCG--------TCTGTCCGTC----------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTA----TTAGACTC----AGTAAT-C-GCT-C-----AT------------CTTCCCATTGAA---------------------CTTTGTGAATGA------AC---------------------------------------------A---T-------------------TCT----G-----C----TATTA-GTA---CACTTTTTATACCCT-----TGC----------------------AGAGGGTATTATAATTTGG---TCA-------AAAATGTGGAACGCAGTGAATGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGG--GTCACCTCC-TGAGTCGATATAAGCAT----GTCCGTCTGTCCG--------TCTGTCTGTCGGTTTCTACGCAAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................TGAATGAGACATCTCCGACCCTA.........................................................................................................23130.314400000
.....................................................................................................................................................................................................................................................................................................GCAGTGAATGAGACATCTCCGACCC...........................................................................................................25120.253000003
...................................................................................................................................................................................................................................................................................................ACGCAGTGAATGAGACATCTC.................................................................................................................21160.132000002
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGG--GTCACCTCC-TGAGTCGA............................................................2990.111100000
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGG--GTCACCTCC-TGA.................................................................24110.091010000
......................................................................................................................................................................................................................................................................................................CAGTGAATGAGACATCTCCGACCCTATAA......................................................................................................29120.081100000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--GTCACCTCC-TGAG................................................................22130.081100000
...................................................................................................................................................................................................................................................................................................ACGCAGTGAATGAGACATCTCCGA..............................................................................................................24130.081001000
....................................................................................................................................................................................................................................................................................................CGCAGTGAATGAGACATCTCCG...............................................................................................................22140.071000010
.....................................................................................................................................................................................................................................................................................................GCAGTGAATGAGACATCTCC................................................................................................................20150.071000001
............................................................................................................................................................................................................CACTTTTTATACCCT-----TGC----------------------AGAGG...........................................................................................................................................................................23200.051010000
........................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGG--GT............................................................................19200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................TGAGTCGATATAAGCAT----GTCCGTCTG......................................26200.051010000
......................................................................................................................................................................................................................................................................................................................................................................GAGTCGATATAAGCAT----GTCCGTCTGTC....................................27200.051010000
droBip1
AAACAAAAATATT------TGGTATTTAGAG-G-----AT------------TTCTAGTAGCTA--------------A------AAGTATG---GG------GTATT----------------------------CGTA----------G---T-------------------AAT----T-----T----AC-CT-ATA----TATTTTTATACCCT-----TGC----------------------AGAGGGTATTATAATTTTG--GTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGG--ATCACCTCC-TGAGTTGATATGAGCAT----GTCCGTCTGTCCG--------TCTGTCCGTC----------------SizeHit CountTotal NormTotal
No Reads
dp5
AACATTAAATACA------AATTAGTTATTA-A-----AC------------CTAAAGTAAATA--------------A---AAACCCCACATATAT------GTATA----------------------------TA----------------T-------------------TAT----A--TTCT----TA-CT-ATA---TAGTTTTTATACCCGGTACTCGAA---------------GAGT-ATAGGGGTATATTAGATTTGTGGTGA--AAATGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGC--ATCAATAGC-CGAGTCGATTGAGACAT----GTCTGTCTGTCCG--------TCTGTCCGTC----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTGTG........................................................................................................................................2380.8870000001060
................................................................................................................................................................................................................................................................................................................................................TTGATCAGC--ATCAATAGC-CGAGTC..............................................................24200.851700000000170
...................................................................................................................................................................................................................................................................................................................................................................................CAT----GTCTGTCTGTCCG--------TCTG......................20200.65130900004000
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTG..........................................................................................................................................2190.5650000001040
....................................................................................................................................................................................................................................................................................................................................................TCAGC--ATCAATAGC-CGAGTCGA............................................................22200.551101100000000
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTGTGT.......................................................................................................................................2470.2920100001000
............................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGC--ATCAATAGC-CGA.................................................................25200.2550500000000
..............................................................................................................................................................................................................................................................................................................................................................................TGAGACAT----GTCTGTCTGTCCG--------TCTG......................2550.2010000000010
...................................................................................................................................................................................................................................................................................................................................................................................CAT----GTCTGTCTGTCCG--------TCTGT.....................21200.2040400000000
...........................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCG--------TCTGTCC...................19200.2040400000000
............................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCCG--------TCTGTCCGT.................20200.2040400000000
........................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCCA.........................................................................................................24200.2040400000000
.................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATATATA............................................................................................28200.2040000000040
..............................................................................................................................................................................................................................................................................................................................................TCTTGATCAGC--ATCAATAGC-CG..................................................................22200.1530300000000
....................................................................................................................................................................................................................................................................................................................................................................................AT----GTCTGTCTGTCCG--------TCTGTC....................21200.1530000003000
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTGTGTAACG...................................................................................................................................2870.1410000000010
..............................................................................................................................................................................................................................................................................................................................................................................TGAGACAT----GTCTGTCTGTCCG--------T.........................2270.1410100000000
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTGTGTA......................................................................................................................................2570.1410000001000
.................................................................................................................................................................................................................TTTATACCCGGTACTCGAA---------------GAG...................................................................................................................................................................................22150.1320000000020
............................................................................................................................................................................................................................................................................TGGTGA--AAATGTATGTGTGTA......................................................................................................................................2180.1310000010000
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTGT.........................................................................................................................................2290.1110000000010
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGT...........................................................................................................................................2090.1110000000100
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGGGTA........................................................................................................................................................................21190.1120200000000
.....................................................................................................................................................................................................................................................................................................................................................CAGC--ATCAATAGC-CGAGTCGA............................................................21200.1020000001010
...................................................................................................................................................................................................................................................................................................................................................ATCAGC--ATCAATAGC-CGAGTC..............................................................21200.1020000002000
.....................................................................................................................................................................................................................................................................................AATGTATGTGTGTAACGTCC................................................................................................................................20100.1010000001000
...........................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCAT........................................................................................................22200.1020200000000
.........................................................................................................................................................................................................................................................TAGGGGTATATTAGATTTGTGG..........................................................................................................................................................22200.1020000002000
..........................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATAAAGTA..................................................................................................29200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGC--ATCAATAGC-CGAG................................................................25200.1020000000200
.....................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCG...............................................................................................................21200.1020000020000
..................................................................................................................................................................................................................................................................................................................................................GATCAGC--ATCAATAGC-CGAGT...............................................................21200.1020200000000
.......................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCCAT........................................................................................................26200.1020000000020
..............................................................................................................................................................................................................................................................................................................................................................AATAGC-CGAGTCGATTGAGA......................................................20200.1020000000020
........................................................................................................................................................................................................................................................................TTTGTGGTGA--AAATGTATGTGTGTT......................................................................................................................................25100.1010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCG--------TCTGTCCGTC----------------20200.1020001010000
................................................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGC--A.............................................................................26200.1020000000200
.............................................................................................................................................................................................................................ACTCGAA---------------GAGT-ATAGGGGTATATTAGA.................................................................................................................................................................27120.0810000100000
.................................................................................................................................................................................................................................GAA---------------GAGT-ATAGGGGTATATTAG..................................................................................................................................................................22130.0810100000000
.........................................................................................................................................................................................................................CGGTACTCGAA---------------GAGT-ATAGGG...........................................................................................................................................................................21160.0610100000000
...........................................................................................................................................................................................................................GTACTCGAA---------------GAGT-ATAGGGGT.........................................................................................................................................................................21160.0610000001000
...........................................................................................................................................................................................................................GTACTCGAA---------------GAGT-ATAGGGGTA........................................................................................................................................................................22160.0610000001000
.................................................................................................................................................................................................................TTTATACCCGGTACTCGAA---------------GA....................................................................................................................................................................................21170.0610100000000
..............................................................................................................................................................................................................................CTCGAA---------------GAGT-ATAGGGGTATATT....................................................................................................................................................................23190.0510100000000
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGGGT.........................................................................................................................................................................20190.0510100000000
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGGGTATA......................................................................................................................................................................23190.0510100000000
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGG...........................................................................................................................................................................18200.0510100000000
.........................TTATTA-A-----AC------------CTAAAGTAAATA--------------A---AAACCC.................................................................................................................................................................................................................................................................................................................................................28200.0510100000000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGC--ATCAATAGC-CGAGTCGAT...........................................................27200.0510000010000
...............................................................................................................................................................................................................................TCGAA---------------GAGT-ATAGGGGTAT.......................................................................................................................................................................19200.0510100000000
.....................................................................................................................................................................................................................................................GT-ATAGGGGTATATTAGATTT..............................................................................................................................................................21200.0510100000000
.........................................................................................................................................................................................................................................................TAGGGGTATATTAGATTTGTG...........................................................................................................................................................21200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................................AT----GTCTGTCTGTCCG--------TCTGT.....................20200.0510000010000
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGGGA.........................................................................................................................................................................20200.0510100000000
...............................................................................................................................................................................................................................TCGAA---------------GAGT-ATAGGGGTATAT.....................................................................................................................................................................21200.0510100000000
....................................................CTAAAGTAAATA--------------A---AAACCCCACA.............................................................................................................................................................................................................................................................................................................................................23200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................AGC--ATCAATAGC-CGAGTCGATTG.........................................................23200.0510000000010
..............................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTG........................................................................................................................................................19200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCG--------TCTGTCCGTC----------------19200.0510000001000
.............................TA-A-----AC------------CTAAAGTAAATA--------------A---AAACCCCACA.............................................................................................................................................................................................................................................................................................................................................28200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................AGC--ATCAATAGC-CGAGTCGATTGAGA......................................................26200.0510100000000
.......................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCC..........................................................................................................24200.0510000000100
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGGT..........................................................................................................................................................................19200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................TCAATAGC-CGAGTCGATTGAGA......................................................22200.0510100000000
.............................TA-A-----AC------------CTAAAGTAAATA--------------A---AAACCCCA...............................................................................................................................................................................................................................................................................................................................................26200.0510100000000
.........................................................................................................................................................................................................................................................................................TATGTGTGTAACGTCCAGAAG...........................................................................................................................21200.0510000010000
............................................................................................................................................................................................................................TACTCGAA---------------GAGT-ATAGGGG..........................................................................................................................................................................19200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................TAGC-CGAGTCGATTGAGAC.....................................................19200.0510000001000
...................................................................................................................................................................................................................................................................................................................................................................................CAT----GTCTGTCTGTCCG--------TCTGTC....................22200.0510010000000
......................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGC--ATCAATAGC-C...................................................................29200.0510010000000
...................................................................................................................................................................................................................................................................................................................GTTTCCGACCCCATAAAGTA..................................................................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................T----GTCTGTCTGTCCG--------TCTGTC....................20200.0510001000000
droPer2
TTT------------------------GGAA-C-----TC------------TTG-----GAAG---------------------CCATGCGCAAGT------GGGTT----------------------------TTC-----------A---T-------------------TAT----A----------GA-TA-ACA----CGTTTTTATACACGTTCCTCGAA---------------GAGT-TAAAGGATATATTAGTTTTG--TGGTGCAAGTGAATGTGTGTTCCACCCAGAAGGAAGCGTTTCCGACACCATTAAGCATATATATTCTTGATCAGCCAATCAATAGG-CGATTTGATATAGCCAT----GTCTGTCTGTCCGTCTT----GATGAGCGCCTAGATCT-CAGAGACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................GCATATATATTCTTGATCAGC................................................................................21200.051010000
droWil2
ACTTTA-TTTAAGTT----GACTGTTAGAAAAC-----GT------------TTGTATAGGGAAAAGAAATTGACTGT-------TT-----TAAGA------G-GT-------------------------------------------T---T-------------------TCC----G----GC----AA-TT-ATT----TATTGTTATACCATACACCCATA---------------GGGT-GAAATGGTATATTAAAGTCG--CCAA-------AATGTATGTAACAGGCAGAAGGAAGCAACTCCGACCCCACAAAGTATATATATTCTTGATCAGG--ATCAACAAC-CGAGTCGATCTAGCCAT----GTCCGTCTGTCCG--------TATGAACACCTAGATCT-CGGAGACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................TGTATAGGGAAAAGAAATTGACTGT-------TT-----.............................................................................................................................................................................................................................................................................................................................................2722.50503110
.......................................................................TGACTGT-------TT-----TAAGA------G-GT-------------------------------------------T---T-------------------TCC----G----G..............................................................................................................................................................................................................................................2411.00101000
.......................................................TATAGGGAAAAGAAATTGACTGT-------TT-----.............................................................................................................................................................................................................................................................................................................................................2521.00200020
.....................................................TGTATAGGGAAAAGAAATTGACTGT-------TA-----.............................................................................................................................................................................................................................................................................................................................................2720.50100100
.....................................................TGTATAGGGAAAAGAAATTGACTGT-------T...................................................................................................................................................................................................................................................................................................................................................2620.50100100
.................................................................................................................................................................................................................................................................................................................................................................................................................TGAACACCTAGATCT-CGGAGACT23200.35700070
...........................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCAA....................................................................................................................2630.33101000
..............T----GACTGTTAGAAAAC-----GT------------TTGTATAGGG...........................................................................................................................................................................................................................................................................................................................................................................27200.25505000
....TA-TTTAAGTT----GACTGTTAGAAAAC-----...................................................................................................................................................................................................................................................................................................................................................................................................2450.20110000
......................................................................................................................................................................................................................................................T-GAAATGGTATATTAAAGTCG--C..........................................................................................................................................................22200.15300030
.........................TAGAAAAC-----GT------------TTGTATAGGGAAAAGA.....................................................................................................................................................................................................................................................................................................................................................................26200.15303000
................................................................................................................................................................................................................................................................................................................................................TTGATCAGG--ATCAACAAC-CGAGT...............................................................23200.10200020
....................................................................................................................................................................................................................................................................................................................................................TCAGG--ATCAACAAC-CGAGTCGAT...........................................................23200.10202000
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGG--ATCAACAAC-....................................................................21200.10200200
...............................................................................................................................................................................................................................................................................................................................................................................TAGCCAT----GTCCGTCTGTCCG--------TATGATA...................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................................AAC-CGAGTCGATCTAGCCAT----GTCC...........................................24200.05101000
...............................................................................................................................................................................................................................................................................................................................................................................TAGCCAT----GTCCGTCTGTCCG--------TA........................22200.05100010
...................................................................................................................................................................................................................................A---------------GGGT-GAAATGGTATATTAAAGTCG--C..........................................................................................................................................................26200.05101000
......................................................................................................................................................................................................................................................................AAGTCG--CCAA-------AATGTATGTAACA...................................................................................................................................23200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................CAT----GTCCGTCTGTCCG--------TATGA.....................21200.05101000
.........................TAGAAAAC-----GT------------TTGTATAGGGAAAA.......................................................................................................................................................................................................................................................................................................................................................................24200.05100010
................................................................................................................................................................................................................................................................................................................................................................................AGCCAT----GTCCGTCTGTCCG--------TATG......................23200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................TAGCCAT----GTCCGTCTGTCCG--------TATGAACAC.................29200.05101000
droVir3
AAGTGCGTAAAGAAA----ACTGTTCCAGAT-G-----AT------------TTGTATAAGCAA--------------A----------------AA------GTAGT----------------------------ATTA----------T---T-------------------TAT----A--TTTT----TT-CT---A---TTCTTTTTATACCTTGAACCCAAATCATCATATCAAAATGGGT-ATAAGGGTATATTGTAATTG--TGCAAAATCAAAATGTATGTAACAGGCAGAATGAAGCATCTCCGACCCCATAAAGGATATATATTCTTGATCAGC--ATCAATAGC-CCAGTCGATCTAGCCAT----GTCCGTCTGTC-G--------TGTGAACGCAAGGATCT-CAAAACATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAATGAAGCATC...................................................................................................................26131.46190000000010000000000000000200020000140000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAATGAAGCATC...................................................................................................................25130.7710000010002000000000001000110003000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGC--ATCAATAG......................................................................23200.70140000000000000000000000001400000000000000000000000000000000000000
...........................................................................................................................................................................................................................................ATCAAAATGGGT-ATAAGGGTATATTG...................................................................................................................................................................2620.501000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGC--ATCAATAGC-....................................................................25200.357000000000000000000000000000000000070000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TAACAGGCAGAATGAAGCATCTCCGAC.............................................................................................................27120.253000000000000000000000000001000000000000000000000000000000000002
............................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAATGAAGCAT....................................................................................................................25140.213000000000000000000000000000000000030000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAATGAAGCATCTCCGAC.............................................................................................................31110.182000000000000000000000000000000000000000000000000000000000000002
..............................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAATGAAGCATCTCCGAC.............................................................................................................30120.172000000000000000000000000000000000000000000000000000000000000002
..................................................................................................................................................................................................................................................................................................AACAGGCAGAATGAAGCATCTCCGAC.............................................................................................................26130.152001000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................TGTAACAGGCAGAATGAAGCATCTCC................................................................................................................26130.152000000000000000000000000100100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAATGAAGCA.....................................................................................................................24140.142000000000000000000000000000000000020000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAAGGATCT-CAAAACA.2070.141000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAATGAAG.......................................................................................................................22180.112000000001000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATAGC-CCAGTCGATCTAGCCA....................................................21180.112000000000000000000000001000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGCCAT----GTCCGTCTGTC-...................................24200.102000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AACGCAAGGATCT-CAAAAC..19200.102000000000000000000000000000002000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGC--ATCAATAGC-CCAGTC..............................................................27100.101000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGC--ATCAATAG......................................................................22200.102000000000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGC--ATCAATAGC-C...................................................................24200.102000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAT...........................................................................................................................20200.102000000000000000000000000000000000000000200000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TCAATAGC-CCAGTCGATCTAGCCAT----G..............................................26110.091000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATCAATAGC-CCAGTCGATCTAGCCAT----G..............................................27110.091001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAATGAAGCATCTCC................................................................................................................28120.081001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CAAAATCAAAATGTATGTAACAGGC................................................................................................................................25120.081000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GC-CCAGTCGATCTAGCCAT----GTCCGTCT.......................................27120.081000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAATGAAGCATCT..................................................................................................................26130.081000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAATGAAGCATCT..................................................................................................................27130.081000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GATCAGC--ATCAATAGC-CCAGTCG.............................................................23130.081000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................TAACAGGCAGAATGAAGCATCTCCG...............................................................................................................25130.081000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAATGAAGCATCTC.................................................................................................................26130.081000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAATGAAGCATCTCC................................................................................................................27130.081000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................CAGGCAGAATGAAGCATCTCCGAC.............................................................................................................24140.071000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAATGAAGCAT....................................................................................................................24140.071000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGC--ATCAATAGC-CCAGT...............................................................26140.071000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAATGAAGCATCT..................................................................................................................25140.071000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGTAACAGGCAGAATGAAGCA.....................................................................................................................21150.071000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGTAACAGGCAGAATGAAGCAT....................................................................................................................22150.071000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................AGC-CCAGTCGATCTAGCCAT----GTCC...........................................24160.061000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TCAAAATGTATGTAACAGGCAGA.............................................................................................................................23170.061000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ACAGGCAGAATGAAGCATCT..................................................................................................................20170.061000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ACAGGCAGAATGAAGCATC...................................................................................................................19170.061000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GGCAGAATGAAGCATCTCC................................................................................................................19190.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCAT----GTCCGTCTGT.....................................20200.051000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGC--ATCAATAG......................................................................24200.051000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGC--ATCAATA.......................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGC--ATCAATAG......................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGC--ATCAATAGC-CCT.................................................................27200.051000000000000000000000000000000100000000000000000000000000000000
droMoj3
AATATTTTAAAAAAG----TACTAATTCAAC-T-----AT------------TTTTATAAATAT---------------------TC--------------------------------------------------TCAACTTTACTAAA---T-------------------TATTTT-A-----A----AT-AT-ATT----CGTTTTTATACCCTGAACCCATT---------GAAAATAGGAAATCAGGGTATAATGGTTTTG--T-GA-------AAAGTATGTAACAGGCAGAAGGAATCATCGCAGACTCCATAAAGTATATATATTCTTGATCAGA--ACGACGAGC-TGAGTCGATATAGCCCT----GTCCGTCTGTCCGTCCGTTCGTATGAGCAAAAGGATCT-CAGAAGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................TCGATATAGCCCT----GTCCGTCTGTCC...................................25200.357700000
........................................................................................................................................................................................................T----CGTTTTTATACCCTGAACCCATT---------G...........................................................................................................................................................................................25200.102200000
.................................................................................................................................................................................................................................ATT---------GAAAATAGGAAATCAGGGTATC......................................................................................................................................................................25200.051100000
...................................................................................................................................................................................................................................................................................................................................AGTATATATATTCTTGATCAG.................................................................................21200.051000010
..........................................................................................................................................................................................................................................................................................................................ACTCCATAAAGTATATATATTCTTGATC...................................................................................28200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCCGTT............................19200.051100000
...................................................................................................................................................................................................................................................................ATGGTTTTG--T-GA-------AAAGTATGTAACAGGC................................................................................................................................28200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................TGAGTCGATATAGCCCT----GTCCGTC........................................24200.051000001
droGri2
AAATTAATATAAATG------TAATTTGTAC-G-----CT-T----------TTTAATAA------------------------------------A------ATGAA----------------------------ATCA----------A---T--------------AATATTAT----G-----C----ATAAA-ATC---GAATGTTTATACCCTGAACCCATA---------AAAAACGGGTAAAAAGG-------------G--TGCA-------AATGTATGTAACAGGCAGAAAGAAGCATCTCCGACCTCATAAAGTGTATATATTCTTCATCAGG--GTCAACAGC-CGAGT---TATAGCCAT----GTCCGTCCGTCTC--------TATGAACACTCAGATCT-CAGAGACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................ATAGCCAT----GTCCGTCCGTC....................................19130.08110

Generated: 05/19/2015 at 12:10 PM