ID:

dsi_361

 Coordinate:

node_59659:16264-16318 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
ZAM_I-intLTRGypsy-
mature
  1. x:20241438-20241460 +
  2. node_2401:1110-1132 +
  3. node_70051:1982-2004 +
  4. dsi_361  node_59659:16264-16286 +
star

Sense Strand Reads

ATATAATCTGGAAAAATATAATTGTGGTTACTATTTGGTTCTTCTTTTATTTTTGATTTGTGGATTTTTTGATCCTTGTGGGATATAAACATCAACACGTCCTTTTTAACAATATGTCTCGGGAATCGGGGCGGTATTTTATTCCTTCTATTCTC
***********************************...................(((.(((.(((.(((..(((((...)))))..))).))).))).))).................************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M025
embryo
 SRR902009
testis
 M053
female body
 SRR1275487
Male larvae
..................................................TTTTGATTTGTGGATTTTTTGAT.................................................................................. 23 0 4 75.50 302 128 129 20 8 17 0 0 0 0 0
.................................................TTTTTGATTTGTGGATTTTTTGAT.................................................................................. 24 0 2 6.50 13 0 10 1 1 1 0 0 0 0 0
........................................................TTTGTGGATTTTTTGATCCTTGTGGGA........................................................................ 27 0 1 6.00 6 1 5 0 0 0 0 0 0 0 0
..........................................................TGTGGATTTTTTGATCCTTGTGGGA........................................................................ 25 0 1 5.00 5 2 1 1 1 0 0 0 0 0 0
...................................................TTTGATTTGTGGATTTTTTGAT.................................................................................. 22 0 4 4.50 18 7 4 4 2 1 0 0 0 0 0
....................................................TTGATTTGTGGATTTTTTGAT.................................................................................. 21 0 4 4.50 18 8 4 2 2 2 0 0 0 0 0
.........................................................................................................TTAACAATATGTCTCGGGAATCGGGG........................ 26 0 1 4.00 4 1 2 0 0 1 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGATCCTTGT............................................................................ 26 0 1 4.00 4 1 0 2 0 1 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGAT.................................................................................. 20 0 4 3.75 15 4 0 10 1 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTTGA................................................................................... 22 0 4 3.75 15 7 6 0 0 2 0 0 0 0 0
........................................................TTTGTGGATTTTTTGAT.................................................................................. 17 0 4 3.00 12 3 0 9 0 0 0 0 0 0 0
........................................................................................................TTTAACAATATGTCTCGGGAATCGGGG........................ 27 0 1 3.00 3 1 0 1 1 0 0 0 0 0 0
.................................................TTTTTGATTTGTAGATTTTTGGAT.................................................................................. 24 2 2 3.00 6 6 0 0 0 0 0 0 0 0 0
...............................................TATTTTTGATTTGTGGATTTTTTGA................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
..........................................................TGTGGATTTTTTGATCCTTGTGGGATA...................................................................... 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGA................................................................................... 19 0 4 2.00 8 1 0 6 1 0 0 0 0 0 0
..........................................................................................................TAACAATATGTCTCGGGAATCGGGG........................ 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCGGGAATCGGGGCGGTATTTTAT............. 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
................................................ATTTTTGATTTGTAGATTTTTGGAT.................................................................................. 25 2 2 1.50 3 3 0 0 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTTG.................................................................................... 21 0 4 1.25 5 1 1 2 0 0 1 0 0 0 0
.....................................................TGATTTGTGGATTTTTTG.................................................................................... 18 0 4 1.25 5 0 0 5 0 0 0 0 0 0 0
..................................................TTTTGATTTGTAGATTTTTGGAT.................................................................................. 23 2 4 1.25 5 5 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGGGGCGGTATTTTATTCCTTC....... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................TGTGGGATATAAACATCAACACGTC...................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TAACAATATGTCTCGGGAATCGGGGA....................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTTGATC................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTGGACTCTTG............................................................................. 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TCGGGAATCGGGGCGGTATTTTATT............ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................TCGGGAATCGGGGCGGTATTTTAA............. 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................TAATTGTGGTTACTATTTGGTTCTTCTTT............................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................ATTTTTGATTTGTGGATTTTTTGAT.................................................................................. 25 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................TTTTTAACAATATGTCTCGGGAATC............................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................ACATCAACACGTCCT.................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................TTTGATTTGTGGATTTTTTGATC................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................GATTTGTGGATTTTTTGAT.................................................................................. 19 0 4 1.00 4 0 0 4 0 0 0 0 0 0 0
......TCTGGAAAAATATAATTGTGGTTAC............................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................TGGTTACTATTTGGTTCTTCTTTTAT......................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.........................................................TTGTGGATTTTTTGATCCTTGAGGGATA...................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................TTTGTGGATTTTTTGATTTTTGTGGT......................................................................... 26 3 2 1.00 2 1 1 0 0 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGATCCTTG............................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....................................................TGATTTGTGGATTTTTT..................................................................................... 17 0 4 1.00 4 0 0 4 0 0 0 0 0 0 0
.....................................................................................TAAACATCAACACGTCCTT................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................TGGGATATAAACATCAACACGTCCTT................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATT......................................................................................... 16 0 5 0.80 4 0 0 4 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTT..................................................................................... 20 0 4 0.75 3 0 0 2 1 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTTT...................................................................................... 16 0 4 0.75 3 0 0 3 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTTGAC.................................................................................. 23 1 4 0.50 2 1 1 0 0 0 0 0 0 0 0
....................................................TTGATTTGTAGATTTTTGGAT.................................................................................. 21 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0
.............................................TTTATTTTTGATTTGTGGATCTTTTGA................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.................................................TTTTTGATTTGTGGATTTTTTGA................................................................................... 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...................................................TTTGATTTGTAGATTTTTGGAT.................................................................................. 22 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0
.................................................TTTTTGATTTGTGGATCTTTTGATC................................................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTTGATA................................................................................. 24 1 4 0.50 2 0 0 0 0 0 2 0 0 0 0
ATGTAATCTGGACTAATATA....................................................................................................................................... 20 3 8 0.50 4 0 0 0 1 3 0 0 0 0 0
.......................................................ATTTGTGGATTTTTTGAT.................................................................................. 18 0 4 0.50 2 0 0 2 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGAT.......................................................................................... 15 0 5 0.40 2 1 0 1 0 0 0 0 0 0 0
........................................................TTTGTGGATTTTTTGA................................................................................... 16 0 5 0.40 2 1 0 1 0 0 0 0 0 0 0
.............................ACTATTTGGTTCTTC............................................................................................................... 15 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGATTCTTTT............................................................................ 26 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................................TAACTTTGATTTGTGGATTTTT...................................................................................... 22 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0
..................................................TTTTGATTTGTGGATTTTTTGATAATA.............................................................................. 27 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
............................................TTCTATCTTTGATTTGTGGA........................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGATTCTT.............................................................................. 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................TTTGTGGATTTTTTGATTTTTGT............................................................................ 23 2 10 0.30 3 2 0 0 1 0 0 0 0 0 0
...................................................TTTGATTTGTGGATTTTTT..................................................................................... 19 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................ATTTGATTTGTGGATTTTTTGAT.................................................................................. 23 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..................................................TCTTGATTTGTGGATTTTTTGAT.................................................................................. 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................TTTGGATTTGTGGATTTTTTGAT.................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
...................................................TTTGATTTGTGGATTTTTTGAAA................................................................................. 23 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
.................................................TTTTTGATTTCTAGATTTTTGGAT.................................................................................. 24 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................CTGATTTGTGGATTTTTTGA................................................................................... 20 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTTTTGATTC................................................................................ 22 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.....................................................TGATTTATGGATTTTTTG.................................................................................... 18 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTATGAT.................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................GTTTGATTTGTGGATTTTTTGAT.................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTTGGTTTGTGGATTTTTTGAT.................................................................................. 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................TTGATTTGTGGATTTTT...................................................................................... 17 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.....................................................TGATTTGTAGATTTTTGGAT.................................................................................. 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................TTGATTTGTGGATTTTTTG.................................................................................... 19 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..................................................TTCTGATTTGTGGATTTTTTGAT.................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATCTTTTGAT.................................................................................. 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....................................................TGATTTGTGGATTTT....................................................................................... 15 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TGAACCTTGTGGGATTTA.................................................................... 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0
..................................................CTTTGATTTGTGGATTTTTTGA................................................................................... 22 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.......................................................ATTTGTGGATTTTTTGA................................................................................... 17 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...................................................TTTGATTTGTAGATTTTTGGA................................................................................... 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTT........................................................................................ 17 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
........................................................TTTGTGGATTTTTTG.................................................................................... 15 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0
...................................................TTTGATTTGTGGATT......................................................................................... 15 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0
................................................................................................ACAACCTTTTTAACCATATGT...................................... 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.............AATTATAATTGTGGTTA............................................................................................................................. 17 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
..........GAAAAAGATCAATGTGGTTA............................................................................................................................. 20 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0
.....................................................TTATTTGTGGATTTTTTG.................................................................................... 18 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GTATTTTGTTCCTTC....... 15 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................CCGGAATCCGGGCGGTA................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................ATTCCTCGTGAATCGGGG........................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................TGGGGATTCTGGGCGGTAT.................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..........................................TCTGTTATTTTTGAT.................................................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................TTTTGATTTGTGGATTTTTGAT................................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATATTAGACCTTTTTATATTAACACCAATGATAAACCAAGAAGAAAATAAAAACTAAACACCTAAAAAACTAGGAACACCCTATATTTGTAGTTGTGCAGGAAAAATTGTTATACAGAGCCCTTAGCCCCGCCATAAAATAAGGAAGATAAGAG
*************************************...................(((.(((.(((.(((..(((((...)))))..))).))).))).))).................*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body
.......................................AGAAGAAAATAAAAACTAAACACC............................................................................................ 24 0 1 14.00 14 13 0 1 0 0 0 0 0
......AGACCTTTTTATATTAACACCAATGAT.......................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0
.......................................................................................TTGTAGTTGTGCAGGAAAAATTGT............................................ 24 0 1 2.00 2 0 1 1 0 0 0 0 0
.........................................................................................GTAGTTGTGCAGGAAAAATTGTTAT......................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0
.......................................................................................TTGTAGTTGTGCAGGAAAAATTGTT........................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0
......................................AAGAAGAAAATAAAAACTAAACACC............................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................ATTGTGCAGGAAAAATTGTTATACAG..................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................ACAGAGCCCTTAGCCCCGCCATAAAAT.............. 27 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................TGTGCAGGAAAAATTGTTATACAGAG................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................TGAAGAAAATAAAAACTAAACACC............................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................CTATATTTGTAGTTGTGCAGGAAAAA................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................ATATTTGTAGTTGTGCAGGAAAAATT.............................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................TATTTGTAGTTGTGCAGGAAA.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................TTGTAGTTGTGCAGGAAAAATTGTTAT......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................TGTAGTTGTGCAGGAAAAATT.............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................CCAAGAAGAAGATAAGAAC.................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0
.......................................................................................................................................AAAAATAAGGAAGATAAGAT 20 2 5 0.20 1 0 0 0 0 0 0 1 0
TACATTAGACCTGATTATAT....................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0
....................................CCAAGAAGACAATGAAAA..................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 2
.............................................................................................................GCTATAGAGAGCCCTTGG............................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_59659:16214-16368 + dsi_361 ATA-TAAT-CTGGAAA-----AATA-TAATTGTG--GTTAC----TA--T-----T---TGGTTC----------TTCTTTTATTTTTGATTTGT-GGATTTTTTGATCCTTGTGGGATATAAACATCAACACGT---CCTTTTTAACAATATGTCTCGGGAATCGGG-GCGGTATTTTATTCCTTCTATTCTC
droSec2 scaffold_134:50609-50766 - GTA-TAAT-CTGAAAA-----AATA-TGACTGTG--ATTAC----TA--T-----T---TGGTTC---------TTCTCTTTATCTTTGATTTGT-GGATCTTTTGATCTTTGTGTGATATAAAGGTTAGCCCATTGTCCTTTTTAACGATATGTTTCGTAAATCGGG-GCGTTAGTTTGTTCCTTCTGTT-TC
dm3 chrUextra:12113-12273 + GTT-TAAT-CTGGAAA-----AATA-TAACTGTG--GTTAC----TA--T-----T---TGGTTCTT-------TTTTTTTTTTTTTTGATCTGT-GGATTTTTTGATCCTTGTGTGATATAAACGTCAACCTGTTGTCCTGTTTAACGATATGTTTCGTGAATCGGG-GCGTTAGTTTATTCCTTCTATTTTC
droEre2 scaffold_721:716-873 + GCA-AAAT-CTGTAAAA------TA-TGACTGAG--ATTAC----TA--T-----T---TGGTTC---------TTTTTTTAATTTTAGATTTGT-GTATCTTTTGGTTTTTGTGTGAAATAAAGGTTAGGCCTTTATCCTCTCTAACTGTGTGTTTTGAAAATCGAG-GTGTTAGCTTATTTCTCCAATTTTC
droYak3 v2_chrX_random_022:106118-106287 + GTA-TAAC-CTGAAAT-----GATA-TTATTATATATTTATCTACTATTT-----TGTCTGATTC---------TTTTTTTAATTTTTGATTTAT-GTATTTTCTGTCTTTTGTTCGTTGTAAAGGTTACCCCGTTATCATCAGCTACTTTGTGTTGGGTAAATCTGG-GTGTTAGCTTATTTCTCCTATTTTC
droEug1 scf7180000409558:32-184 + CGC-AAGT-CTGTAGGATTAA--TG--GAAT-----------------TTGGTT-TGTTTAATTC---------TATTTC--TTTTTTGGTTTATTGTAAT-TTTGTTTT---TGTCGAATTAGTGTTATCCTGTCATCTT-TAGTACCCTGTGCTGCGAGAACCGGG-GGGTGAGTTTGTTCCGTCTATTTTC
droBia1 scf7180000302207:23595-23766 - GGT-GCAT-CTGGAAGGTTAA--TA-GGAATTAT--AATATTTCTTGTTTC----TTTTTAATAT---------TTTTCTTAATCTTAGCTTTGT-GTAACTTTTGTTTCTATGTAGAGATAAGTGTAATGTCTTGGTCCTCTAGAACTCTCTGTTTGGAAAACCTAG-GAGTTATTTGATTCATTCTATTTTC
droTak1 scf7180000413359:16293-16448 - ATA-TTAGTTCGCAAC------AAATTAATCGTT-----AG----TA--T-----T---TG-TTA---------GTTTTCTAATTTTAGATTTGT-GTATTTTTTGTTGCCTTTCGGTGATCAACGTTACCCCCTTATCTTCTTGCACTTTATGCTTAGTAAACCTTG-GCGTTGTTTTGTCTCTTCTGTTCTC
droEle1 scf7180000490469:6754-6911 - CTA-AAAT-TAAGAAA-----AATG-T-TTTATT------------ATGTT----GTTTTAATCT---------TCCGTTTTATTTTAGATTTAT-GGATTTTTTGTGATTTTTTGCTTAGAAACGTGAGTCCTTTGTCCTCTTTTACCTCATGAGTTGAAAATCTCG-GTGTTAGTTTATTTCGTCTGTTTTC
droRho1 scf7180000775408:5136-5294 + AGG-TTAA-TAGGAAT-----TATA-TTATTT-C----------TTGTTT-----CTTTTAATAT---------TTTTCTTAATCTTTGCTTTGT-GTAGCTTCTGTTTCTTTGTGGAAATGAGTGTAATGTCTTTGTCTTCAAGAACTCTCTGTTTGGAAAACCTAG-GAGTTATTTTATTCCTTCTATTCTC
droFic1 scf7180000453466:2697-2858 + CGC-AAAT-CTGTAAGATTAA--TG-GGAAT-----------------TTGGTTTGTTTTAATTC---------TATTTCTTATTTTGGCTTTAT-GTAATTTTTGTTTTTTAGCCGAAATTAGTGTTATCCTGTCATCTCTTAGTACCCTATGTTGCGAGAAACGGGGGGGTGAGTTTGTTCCGTCTATTTTC
droKik1 scf7180000299906:6685-6841 - GCGTAAAC-CTGTAAAA------T--TAATTGAA--AT----------TT-----GGTTTTATTT---------TGTTCTTCATTTTAGCTTTGT-GTAACTTCTGTTTTTTAATTGAAGTAAGTGTGATTTTATTGTCCCTAAGTACTTTGTGTTTTGAAAAGCGTG-GCGTGAGTTTATTTCGTCTATTTTC
droAna3 scaffold_13260:378456-378572 + T---------------------------------------------------------------------------TTCCTAATTTTTTGTTTAT-GTAGCTTTTGACCTTTAGTTGTTAGGAAGGTGACGCCTTTGTCTCTACCTACTTTGTGTAGTGAAAATCTCG-GAGATATTTTGTTCCTACGGTTTTC
droBip1 scf7180000391679:7288-7424 + TGG----------------------------------TTTC----TA--T-----T---TGTTTTTTCA--CTAATTTCCGTATTTTAGATTTGT-GTAATTTCTGTCCTTTGGTAGTCGTCAGAGTTATATGGTTGTTGTTTGCGACGCGGTGTTTCGTAAATCTAG-GAGTTATCTTGTTGCGTC-----TC
dp5 Unknown_singleton_2684:1645-1807 - GTA-GCAT-CTGTAAGA-----TAATTGAATGTC--TTTAT----TT--T-----CTTATTATTT---------TTTTCTTTATTTTTGATTTGT-GTATCTTTTGATTTCTTGTAGTTGAGAGTGTTATCCCGCTATCTTTTAAAACTTGGTGTTTACTGAACCTAG-GTGTTAGCCTATTTCTTCTGTTCTC
droPer2 scaffold_1886:962-1123 - GTA-GCAT-CTGTAAGA-----TAATTGAATGTC--TTTAT----TT--T-----C---TTATTATT-------TTTTTTTTATTTTTGATTTGT-GTATCTTTTGATTTCTTGTAGTTGAGAGTGTTATCCCGCTATCTTTTAGAACTTGGTGTTTACTGAACCTAG-GTGTTAGCTTATTTCTTCTGTTCTC
droWil2 scf2_1100000004053:1434-1596 + TTA-TATT-ATATATA-----TGTA-TACCTGG--------------TTT-----TTTGCTAAGGCT--TTCTTGTCGTTTTATTTTTGACTTGT-GAATTTTTTGCTTTTTCTTCGTAATAAATGTGACCCCCTTATCTTTAGTGACAATATGTTTTGAAAAGCGAG-GAGTCAATTTATTTCTTCTATTTTC
droVir3 scaffold_12958:936941-937097 - GCA-GAAT-CTATAAAA------TA-TGACTGTA--ATGAC----TA--T-----T---TTGTCC---------TTTTTTTAATTTTTGATTTGT-GTATCTTTTGATCCTTGTGTGATATAAAGGTTGGACCTTTGTCCTGCTTGATTTTATGTTTAGTGAATCTAT-GCGTTAACTTATTTCTCCTATT-TC
droMoj3 scaffold_6541:786567-786718 - ATG-TAAT-TTGAACA-----GTTA-TATT----------------T--T-----ATTTTTTTAT---------TTTTCTTAACTTTAGACTTGT-GTAATTTTTGATTTTTTGATGTTAAAAAGGTTATTCCCTGATCTGATAATATCTTGTGTTTAGAAAATCTAG-CGGTCAATTTATTTCGTCTGTTTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATA-TAAT-CTGGAAA-----AATA-TAATTGTG--GTTAC----TA--T-----T---TGGTTC----------TTCTTTTATTTTTGATTTGT-GGATTTTTTGATCCTTGTGGGATATAAACATCAACACGT---CCTTTTTAACAATATGTCTCGGGAATCGGG-GCGGTATTTTATTCCTTCTATTCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................TTTTGATTTGT-GGATTTTTTGAT......................................................................................23475.5030200000012912817820000000
...................................................................................TTTTTGATTTGT-GGATTTTTTGAT......................................................................................2426.5013000000100111000000
..........................................................................................TTTGT-GGATTTTTTGATCCTTGTGGGA............................................................................2716.00600000051000000000
............................................................................................TGT-GGATTTTTTGATCCTTGTGGGA............................................................................2515.00500000012011000000
.....................................................................................TTTGATTTGT-GGATTTTTTGAT......................................................................................2244.501800000047124000000
......................................................................................TTGATTTGT-GGATTTTTTGAT......................................................................................2144.501800000048222000000
...............................................................................................................................................TTAACAATATGTCTCGGGAATCGGG-G........................2614.00400000021100000000
.......................................................................................TGATTTGT-GGATTTTTTGATCCTTGT................................................................................2614.00400000001102000000
.......................................................................................TGATTTGT-GGATTTTTTGAT......................................................................................2043.7515000000040110000000
....................................................................................TTTTGATTTGT-GGATTTTTTGA.......................................................................................2243.751500000067200000000
..........................................................................................TTTGT-GGATTTTTTGAT......................................................................................1743.001200000003009000000
..............................................................................................................................................TTTAACAATATGTCTCGGGAATCGGG-G........................2713.00300000001011000000
.................................................................................TATTTTTGATTTGT-GGATTTTTTGA.......................................................................................2512.00200000000020000000
............................................................................................TGT-GGATTTTTTGATCCTTGTGGGATA..........................................................................2712.00200000000200000000
.......................................................................................TGATTTGT-GGATTTTTTGA.......................................................................................1942.00800000001016000000
................................................................................................................................................TAACAATATGTCTCGGGAATCGGG-G........................2512.00200000011000000000
............................................................................................................................................................TCGGGAATCGGG-GCGGTATTTTAT.............2412.00200000000000020000
....................................................................................TTTTGATTTGT-GGATTTTTTG........................................................................................2141.25500000011002010000
.......................................................................................TGATTTGT-GGATTTTTTG........................................................................................1841.25500000000005000000
...................................................................................................................................................................TCGGG-GCGGTATTTTATTCCTTC.......2311.00100000000001000000
...............................................................................................................TGTGGGATATAAACATCAACACGT---C.......................................................2511.00100000000001000000
................................................................................................................................................TAACAATATGTCTCGGGAATCGGG-GA.......................2611.00100000000010000000
....................................................................................TTTTGATTTGT-GGATTTTTTGATC.....................................................................................2411.00100000000010000000
............................................................................................................................................................TCGGGAATCGGG-GCGGTATTTTATT............2511.00100000000000010000
............................................................................................................................................................TCGGGAATCGGG-GCGGTATTTTAA.............2411.00100000000000010000
..........................TAATTGTG--GTTAC----TA--T-----T---TGGTTC----------TTCTTT.................................................................................................................2911.00100000000100000000
..................................................................................ATTTTTGATTTGT-GGATTTTTTGAT......................................................................................2521.00200000020000000000
............................................................................................................................................TTTTTAACAATATGTCTCGGGAATC.............................2511.00100000000000010000
...........................................................................................................................ACATCAACACGT---CCT.....................................................1511.00100000000001000000
.....................................................................................TTTGATTTGT-GGATTTTTTGATC.....................................................................................2311.00100000001000000000
........................................................................................GATTTGT-GGATTTTTTGAT......................................................................................1941.00400000000004000000
.......T-CTGGAAA-----AATA-TAATTGTG--GTTAC----.....................................................................................................................................................2511.00100000000010000000
................................TG--GTTAC----TA--T-----T---TGGTTC----------TTCTTTTAT..............................................................................................................2611.00100000000000010000
.......................................................................................TGATTTGT-GGATTTTTTGATCCTTG.................................................................................2511.00100100000000000000
.......................................................................................TGATTTGT-GGATTTTTT.........................................................................................1741.00400000000004000000
........................................................................................................................TAAACATCAACACGT---CCTT....................................................1911.00100000000001000000
.................................................................................................................TGGGATATAAACATCAACACGT---CCTT....................................................2611.00100000000001000000
....................................................................................TTTTGATTTGT-GGATT.............................................................................................1650.80400000000004000000
....................................................................................TTTTGATTTGT-GGATTTTTT.........................................................................................2040.75300000000012000000
.......................................................................................TGATTTGT-GGATTTTT..........................................................................................1640.75300000000003000000
....................................................................................TTTTGATTTGT-GGATTTTTTGAC......................................................................................2340.50200000011000000000
...................................................................................TTTTTGATTTGT-GGATTTTTTGA.......................................................................................2320.50100000010000000000
....................................................................................TTTTGATTTGT-GGATTTTTTGATA.....................................................................................2440.50200000000000020000
.........................................................................................ATTTGT-GGATTTTTTGAT......................................................................................1840.50200000000002000000
....................................................................................TTTTGATTTGT-GGAT..............................................................................................1550.40200000001001000000
..........................................................................................TTTGT-GGATTTTTTGA.......................................................................................1650.40200000001001000000
.......................................AC----TA--T-----T---TGGTTC----------TTC....................................................................................................................1530.33100000000001000000
.....................................................................................TTTGATTTGT-GGATTTTTT.........................................................................................1940.25100000001000000000
.....................................................................................TTTGATTTGT-GGATTTTTTGAAA.....................................................................................2340.25100000000010000000
......................................................................................TTGATTTGT-GGATTTTT..........................................................................................1740.25100000000001000000
......................................................................................TTGATTTGT-GGATTTTTTG........................................................................................1940.25100000000001000000
.......................................................................................TGATTTGT-GGATTTT...........................................................................................1550.20100000001000000000
.........................................................................................ATTTGT-GGATTTTTTGA.......................................................................................1750.20100000001000000000
....................................................................................TTTTGATTTGT-GGATTT............................................................................................1750.20100000000001000000
..........................................................................................TTTGT-GGATTTTTTG........................................................................................1570.14100000000001000000
.....................................................................................TTTGATTTGT-GGATT.............................................................................................1580.13100000000001000000
....................................................................................TTTTGATTTGT-GGATTTTTGAT.......................................................................................22200.05100000010000000000
droSec2
GTA-TAAT-CTGAAAA-----AATA-TGACTGTG--ATTAC----TA--T-----T---TGGTTC---------TTCTCTTTATCTTTGATTTGT-GGATCTTTTGATCTTTGTGTGATATAAAGGTTAGCCCATTGTCCTTTTTAACGATATGTTTCGTAAATCGGG-GCGTTAGTTTGTTCCTTCTGTT-TCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................TA--T-----T---TGGTTC---------TTCTCTTTATCTT...........................................................................................................2380.5044000
.............................................TA--T-----T---TGGTTC---------TTCTCTTTATCTTTGA........................................................................................................2670.4333000
.............................................TA--T-----T---TGGTTC---------TTCTCTTTATCTTTGATT......................................................................................................2870.4333000
.............................................TA--T-----T---TGGTTC---------TTCTCTTTATCTTTG.........................................................................................................2570.2922000
..............................................................................................................................TTAGCCCATTGTCCTTTTTAACGAT...........................................2540.2511000
.......T-CTGAAAA-----AATA-TGACTGTG--AT............................................................................................................................................................2250.2011000
.............................................................................................................................................................CGTAAATCGGG-GCGTTAGTTTGTTCC..........2650.2011000
....TAAT-CTGAAAA-----AATA-TGACTGTG--AT............................................................................................................................................................2550.2010010
......................................................................................................................................TTGTCCTTTTTAACGATATGTTTCGTAAA...............................2950.2011000
...........................................................................................TTGT-GGATCTTTTGATCTTTGTGTG.............................................................................2560.1711000
............................ACTGTG--ATTAC----TA--T-----T---TGGTTC---------TTCTC...................................................................................................................2660.1711000
..........................................................................................................................................................TTTCGTAAATCGGG-GCGTTAGTT................2370.1411000
.............................................TA--T-----T---TGGTTC---------TTCTCTTTATCTTT..........................................................................................................2470.1411000
....................................................................................................................................................................CGGG-GCGTTAGTTTGTTCCTTCTGTT-..2680.1311000
...................................................................................................................................................................TCGGG-GCGTTAGTTTGTTCCTTCTGT....2680.1311000
............................................................................................................CTTTGTGTGATATAAAGGTTAGCCCAT...........................................................2780.1311000
..................................................................................................................GTGATATAAAGGTTAGCCCATTGTCCTTT...................................................2980.1311000
.............................................TA--T-----T---TGGTTC---------TTCTCTTTATCT............................................................................................................2280.1311000
...........................................................................................................TCTTTGTGTGATATAAAGGTTAGCCCA............................................................2780.1311000
..............................................A--T-----T---TGGTTC---------TTCTCTTTATCTTTGAT.......................................................................................................2680.1311000
..................................................................................................................................................................ATCGGG-GCGTTAGTTTGTTCCTTC.......2480.1310010
..............................................A--T-----T---TGGTTC---------TTCTCTTTATCTT...........................................................................................................2290.1111000
dm3
GTT-TAAT-CTGGAAA-----AATA-TAACTGTG--GTTAC----TA--T-----T---TGGTTCTT-------TTTTTTTTTTTTTTGATCTGT-GGATTTTTTGATCCTTGTGTGATATAAACGTCAACCTGTTGTCCTGTTTAACGATATGTTTCGTGAATCGGG-GCGTTAGTTTATTCCTTCTATTTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......T-CTGGAAA-----AATA-TAACTGTG--G.............................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTAACGATATGTTTCGTGAATCGGG-GC.......................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000
..........................TAACTGTG--GTTAC----TA--T-----T---TGGTTCTT-------T.......................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TA-TAACTGTG--GTTAC----TA--T-----T---TGGTTCT................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTTGATCTGT-GGATTTTTTGATCC....................................................................................2512.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TATAAACGTCAACCTGTTGTCCTGTT..................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AACCTGTTGTCCTGTTTAACGATATGT.......................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAC----TA--T-----T---TGGTTCTT-------TTTTTTTTTT..............................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T-TAAT-CTGGAAA-----AATA-TAACTGTG--GT............................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TAACTGTG--GTTAC----TA--T-----T---TGGTTCTT-------TT......................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGTGTGATATAAACGTCAACCTGTTG.........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAC----TA--T-----T---TGGTTCTT-------TTTTTTTTT...............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AACTGTG--GTTAC----TA--T-----T---TGGTT..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AACCTGTTGTCCTGTTTAACGATATGTT......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TCTGT-GGATTTTTTGATCCTTGTGTGA............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTTTTTGATCTGT-GGATTTTTTGATC.....................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......AT-CTGGAAA-----AATA-TAACTGTG--GTTAC----.....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTTTTTTTTTGATCTGT-GGATTTT...........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGGAAA-----AATA-TAACTGTG--GTTAC----TA--T-----T---.......................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TA--T-----T---TGGTTCTT-------TTTTTTTTTTTT............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GAATCGGG-GCGTTAGTTTATTCCTTC.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GATATAAACGTCAACCTGTTGTCCTGT...................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TCGTGAATCGGG-GCGTTAGTTTA..............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................TTTTTTGATCCTTGTGTGATATAAACG....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTAC----TA--T-----T---TGGTTCTT-------TTTTTTT.................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................TTTAACGATATGTTTCGTGAATCGGG-GC.......................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................TA-TAACTGTG--GTTAC----TA--T-----T---TGGTTCTT-------........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TGTTGTCCTGTTTAACGATATGTT......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T-CTGGAAA-----AATA-TAACTGTG--GTTAC----.....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T-TAAT-CTGGAAA-----AATA-TAACTGTG--G.............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTTTTTTTGATCTGT-GGATTTTTTGATC.....................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TG--GTTAC----TA--T-----T---TGGTTCTT-------TTTTTT..................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TA--T-----T---TGGTTCTT-------TTTTTTTTTTTTT...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ACCTGTTGTCCTGTTTAACGATA..........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TGTTGTCCTGTTTAACGATATG........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GATATGTTTCGTGAATCGGG-.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TATAAACGTCAACCTGTTGTCCTGT...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CTGTTGTCCTGTTTAACGATA..........................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CCTGTTGTCCTGTTTAACGATATGTT......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TGAATCGGG-GCGTTAGTTTATTCC..........2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTTCGTGAATCGGG-GCGTTAGTTTA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TCGGG-GCGTTAGTTTATTCCTTCTA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TATAAACGTCAACCTGTTGTCCTGTTT.................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTTGATCTGT-GGATTTTTTGAT......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CGTGAATCGGG-GCGTTAGTTT...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TGTTGTCCTGTTTAACGATATGTTT.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TAACGATATGTTTCGTGAATCGGG-GC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................TTTTTTTTTTTGATCTGT-GGATTTTTT.........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TCAACCTGTTGTCCTGTTTAACGATA..........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TGATATAAACGTCAACCTGTTGTCC......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGTCCTGTTTAACGATATGTTTCGTG.................................2670.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AA-----AATA-TAACTGTG--GTTAC----T....................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................A--T-----T---TGGTTCTT-------TTTTTTTTT...............................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TCCTGTTTAACGATATGTTTCGTGAA...............................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTGTCCTGTTTAACGATATGTTTCGT..................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TCCTGTTTAACGATATGTTTCGT..................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................TGTCCTGTTTAACGATATGTTTCG...................................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................TGTCCTGTTTAACGATATGT.......................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ACGATATGTTTCGTGAATCGG...........................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GTTCTT-------TTTTTTTTTTTTTT..........................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCA-AAAT-CTGTAAAA------TA-TGACTGAG--ATTAC----TA--T-----T---TGGTTC---------TTTTTTTAATTTTAGATTTGT-GTATCTTTTGGTTTTTGTGTGAAATAAAGGTTAGGCCTTTATCCTCTCTAACTGTGTGTTTTGAAAATCGAG-GTGTTAGCTTATTTCTCCAATTTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
GTA-TAAC-CTGAAAT-----GATA-TTATTATATATTTATCTACTATTT-----TGTCTGATTC---------TTTTTTTAATTTTTGATTTAT-GTATTTTCTGTCTTTTGTTCGTTGTAAAGGTTACCCCGTTATCATCAGCTACTTTGTGTTGGGTAAATCTGG-GTGTTAGCTTATTTCTCCTATTTTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................TAAAGGTTACCCCGTTATCATCAGC.................................................2547.2529027200000000
.............................................................................................................TTTGTTCGTTGTAAAGGTTACCCCGT...........................................................2646.2525030000000022
.......................................................................................................................................TATCATCAGCTACTTTGTGTTGGGTA.................................2644.0016010000000015
............................................................................................................TTTTGTTCGTTGTAAAGGTTACCCCGT...........................................................2743.5014030000000011
.......................................................................................................................................TATCATCAGCTACTTTGTGTTGGG...................................2443.2513010000030000
..............................................................................................................TTGTTCGTTGTAAAGGTTACCCCGTT..........................................................2643.2513000000000013
...............................................................................................................................TACCCCGTTATCATCAGCTACTTTG..........................................2543.2513013000000000
......................................................................................................................................TTATCATCAGCTACTTTGTGTTGGG...................................2542.751104000010006
........................................................................................................TGTCTTTTGTTCGTTGTAAAGGTTACCC..............................................................2842.501005000000005
......................................................................................................................TGTAAAGGTTACCCCGTTATCATCAGC.................................................2742.5010010000000000
...............................................................................................................TGTTCGTTGTAAAGGTTACCCCGTTA.........................................................2642.25909000000000
......................................................................................................TCTGTCTTTTGTTCGTTGTAAAGGT...................................................................2541.50605000000001
...............................................................................................................................TACCCCGTTATCATCAGCTACTTTGTG........................................2741.50606000000000
...............................................................................................................................TACCCCGTTATCATCAGCTACTTTGTGT.......................................2841.25505000000000
.......................................................................................................................................TATCATCAGCTACTTTGTGTTGGGT..................................2541.25503000020000
....................................................................................................TTTCTGTCTTTTGTTCGTTGTAAAGGT...................................................................2741.00404000000000
........................................................................................................TGTCTTTTGTTCGTTGTAAAGGTTACCCCGT...........................................................3141.00400000000004
..........................................................................................................TCTTTTGTTCGTTGTAAAGGTTACCC..............................................................2641.00401000000003
...................................................................................................TTTTCTGTCTTTTGTTCGTTGTAAAGG....................................................................2741.00404000000000
........................................................................................................................TAAAGGTTACCCCGTTATCATCAGCTAC..............................................2840.75303000000000
...............................................................................................................TGTTCGTTGTAAAGGTTACCCCGTT..........................................................2540.75303000000000
.................................................................................................TATTTTCTGTCTTTTGTTCGTTGTA........................................................................2540.75303000000000
.................................................................................................................TTCGTTGTAAAGGTTACCCCGTTATCA......................................................2740.75303000000000
........................................................................................................................TAAAGGTTACCCCGTTATCATCAGCT................................................2640.75303000000000
..................................................................................................................TCGTTGTAAAGGTTACCCCGTTATC.......................................................2540.75303000000000
................................................................................TAATTTTTGATTTAT-GTATTTTCTGTC......................................................................................2730.67202000000000
..............................................................................................T-GTATTTTCTGTCTTTTGTTCGTTGTA........................................................................2740.50202000000000
............................................................................................................................................TCAGCTACTTTGTGTTGGGTAAATC.............................2540.50202000000000
.....................................................................................................TTCTGTCTTTTGTTCGTTGTAAAGGT...................................................................2640.50202000000000
.................................................................................................................TTCGTTGTAAAGGTTACCCCGTTATC.......................................................2640.50202000000000
...............................................................................................................TGTTCGTTGTAAAGGTTACCCCGT...........................................................2440.50202000000000
.............................................TATTT-----TGTCTGATTC---------TTTTTTTAATT.............................................................................................................2640.50202000000000
.........................................................................................................................AAAGGTTACCCCGTTATCATCAGC.................................................2440.50202000000000
..............................................................................................................................TTACCCCGTTATCATCAGCTACTTTGTG........................................2840.50202000000000
.....................................................................................................................TTGTAAAGGTTACCCCGTTATCATCAGC.................................................2840.50202000000000
..........................................................................................................TCTTTTGTTCGTTGTAAAGGTTACCCCGT...........................................................2940.50202000000000
......................................................................................................TCTGTCTTTTGTTCGTTGTAAAGGTT..................................................................2640.50201000010000
...............................................................................................................TGTTCGTTGTAAAGGTTA.................................................................1840.50200000000002
............................................................................................................................................TCAGCTACTTTGTGTTGGGTAAAT..............................2440.50200000000002
..........................................................................................................TCTTTTGTTCGTTGTAAAGGTTACCCC.............................................................2740.50200000000002
.............................................................................................AT-GTATTTTCTGTCTTTTGTTCGTTG..........................................................................2640.50202000000000
..............................................................TTC---------TTTTTTTAATTTTTGAT.......................................................................................................2030.33101000000000
...................................................................................TTTTTGATTTAT-GTATTTTCTGTCT.....................................................................................2530.33100000010000
.........................................................TCTGATTC---------TTTTTTTAATTTTTGATT......................................................................................................2630.33101000000000
.......................................................................................TGATTTAT-GTATTTTCTGTCTTTTGTT...............................................................................2730.33100000000001
..............................................................................................................................................AGCTACTTTGTGTTGGGTA.................................1940.25101000000000
.................................................................................................................TTCGTTGTAAAGGTTACCCCGTTAT........................................................2540.25101000000000
.....................................................................................................................................GTTATCATCAGCTACTTTGTGG.......................................2240.25101000000000
................................................................................................................................ACCCCGTTATCATCAGCTACTTTGTGT.......................................2740.25100000010000
..........................................................................................................................AAGGTTACCCCGTTATCATCAGCTACTT............................................2840.25101000000000
........................................................................................................TGTCTTTTGTTCGTTGTAAAGGT...................................................................2340.25101000000000
..............................................................................................................................TTACCCCGTTATCATCAGC.................................................1940.25101000000000
........................................TCTACTATTT-----TGTCTGATTC---------TTTT....................................................................................................................2440.25101000000000
...............................................................................................................................TACCCCGTTATCATCAGCTACTTTGT.........................................2640.25101000000000
............................................................................................TAT-GTATTTTCTGTCTTTTGTTCGTTG..........................................................................2740.25101000000000
.......................................................................................................................................TATCATCAGCTACTTTGTGTTG.....................................2240.25101000000000
....................................................................................................................GTTGTAAAGGTTACCCCGT...........................................................1940.25101000000000
..................................................................................................................TCGTTGTAAAGGTTACCCCGTTAT........................................................2440.25101000000000
.........................................................................................................................................TCATCAGCTACTTTGTGTTGGGTA.................................2440.25101000000000
.......................................ATCTACTATTT-----TGTCTGATTC---------TTTTTT..................................................................................................................2740.25101000000000
............................................................................................................................................TCAGCTACTTTGTGTTGGGTAAATCT............................2640.25101000000000
.............................................................................................................................GTTACCCCGTTATCATCAGCTACTTTG..........................................2740.25101000000000
............................................................................................TAT-GTATTTTCTGTCTTTTGTTCGT............................................................................2540.25101000000000
.........................................................................................................................................TCATCAGCTACTTTGTGTTGGG...................................2240.25101000000000
.........................................................................................................................AAAGGTTACCCCGTTATCATCAGCTAC..............................................2740.25101000000000
...............................................................................................................TGTTCGTTGTAAAGGTTACCCCGTTAT........................................................2740.25101000000000
.TA-TAAC-CTGAAAT-----GATA-TTATTATATA..............................................................................................................................................................2740.25101000000000
.....................................................................................................TTCTGTCTTTTGTTCGTTGTAAAGG....................................................................2540.25101000000000
..................................TATTTATCTACTATTT-----TGTCTGAG...................................................................................................................................2440.25101000000000
.............................................................................................................TTTGTTCGTTGTAAAGGTTACCCCGTTA.........................................................2840.25101000000000
...................................................................................................TTTTCTGTCTTTTGTTCGTTGTAAAG.....................................................................2640.25110000000000
............................................................................................................................GGTTACCCCGTTATCATCAGCTACTT............................................2640.25101000000000
................................................................................................................GTTCGTTGTAAAGGTTACCCCGTTA.........................................................2540.25101000000000
..........................................TACTATTT-----TGTCTGATTC---------TTTTTTTAAT..............................................................................................................2840.25101000000000
................................................................................................GTATTTTCTGTCTTTTGTTCGTT...........................................................................2340.25101000000000
..........................................................................................................TCTTTTGTTCGTTGTAAAGGTTACCCCGTT..........................................................3040.25100000000001
................................................................................................................GTTCGTTGTAAAGGTTACCCCGTT..........................................................2440.25101000000000
..........................................................................................................................AAGGTTACCCCGTTATCATCAGCTAC..............................................2640.25101000000000
................................................................................................................................ACCCCGTTATCATCAGCTACTTTGTG........................................2640.25101000000000
...........................................................................................TTAT-GTATTTTCTGTCTTTTGTTCG.............................................................................2540.25101000000000
........................................................................................................................................ATCATCAGCTACTTTGTGTTGGG...................................2340.25101000000000
..............................................................................................T-GTATTTTCTGTCTTTTGTTCGTTG..........................................................................2540.25101000000000
..........................................TACTATTT-----TGTCTGATTC---------TTTTTT..................................................................................................................2440.25101000000000
.................................................................................................................................CCCCGTTATCATCAGCTACTTTGTGT.......................................2640.25101000000000
...................................................................................................................CGTTGTAAAGGTTACCCCGTTATCATC....................................................2740.25101000000000
..........................................................................................................................................CATCAGCTACTTTGTGTTGGG...................................2140.25100000010000
...........................................................................................................CTTTTGTTCGTTGTAAAGGTTACCCCG............................................................2740.25101000000000
..............................................................................................................TTGTTCGTTGTAAAGGTTACCCCGT...........................................................2540.25101000000000
.............................................................................................................TTTGTTCGTTGTAAAGGTTACCCCGTT..........................................................2740.25101000000000
.............................................................................................................................................CAGCTACTTTGTGTTGGGTAAATC.............................2440.25101000000000
droEug1
CGC-AAGT-CTGTAGGATTAA--TG--GAAT-----------------TTGGTT-TGTTTAATTC---------TATTTC--TTTTTTGGTTTATTGTAAT-TTTGTTTT---TGTCGAATTAGTGTTATCCTGTCATCTT-TAGTACCCTGTGCTGCGAGAACCGGG-GGGTGAGTTTGTTCCGTCTATTTTCSizeHit CountTotal NormTotal
No Reads
droBia1
GGT-GCAT-CTGGAAGGTTAA--TA-GGAATTAT--AATATTTCTTGTTTC----TTTTTAATAT---------TTTTCTTAATCTTAGCTTTGT-GTAACTTTTGTTTCTATGTAGAGATAAGTGTAATGTCTTGGTCCTCTAGAACTCTCTGTTTGGAAAACCTAG-GAGTTATTTGATTCATTCTATTTTCSizeHit CountTotal NormTotal
No Reads
droTak1
ATA-TTAGTTCGCAAC------AAATTAATCGTT-----AG----TA--T-----T---TG-TTA---------GTTTTCTAATTTTAGATTTGT-GTATTTTTTGTTGCCTTTCGGTGATCAACGTTACCCCCTTATCTTCTTGCACTTTATGCTTAGTAAACCTTG-GCGTTGTTTTGTCTCTTCTGTTCTCSizeHit CountTotal NormTotal
No Reads
droEle1
CTA-AAAT-TAAGAAA-----AATG-T-TTTATT------------ATGTT----GTTTTAATCT---------TCCGTTTTATTTTAGATTTAT-GGATTTTTTGTGATTTTTTGCTTAGAAACGTGAGTCCTTTGTCCTCTTTTACCTCATGAGTTGAAAATCTCG-GTGTTAGTTTATTTCGTCTGTTTTCSizeHit CountTotal NormTotal
No Reads
droRho1
AGG-TTAA-TAGGAAT-----TATA-TTATTT-C----------TTGTTT-----CTTTTAATAT---------TTTTCTTAATCTTTGCTTTGT-GTAGCTTCTGTTTCTTTGTGGAAATGAGTGTAATGTCTTTGTCTTCAAGAACTCTCTGTTTGGAAAACCTAG-GAGTTATTTTATTCCTTCTATTCTCSizeHit CountTotal NormTotal
No Reads
droFic1
CGC-AAAT-CTGTAAGATTAA--TG-GGAAT-----------------TTGGTTTGTTTTAATTC---------TATTTCTTATTTTGGCTTTAT-GTAATTTTTGTTTTTTAGCCGAAATTAGTGTTATCCTGTCATCTCTTAGTACCCTATGTTGCGAGAAACGGGGGGGTGAGTTTGTTCCGTCTATTTTCSizeHit CountTotal NormTotal
No Reads
droKik1
GCGTAAAC-CTGTAAAA------T--TAATTGAA--AT----------TT-----GGTTTTATTT---------TGTTCTTCATTTTAGCTTTGT-GTAACTTCTGTTTTTTAATTGAAGTAAGTGTGATTTTATTGTCCCTAAGTACTTTGTGTTTTGAAAAGCGTG-GCGTGAGTTTATTTCGTCTATTTTCSizeHit CountTotal NormTotal
No Reads
droAna3
T---------------------------------------------------------------------------TTCCTAATTTTTTGTTTAT-GTAGCTTTTGACCTTTAGTTGTTAGGAAGGTGACGCCTTTGTCTCTACCTACTTTGTGTAGTGAAAATCTCG-GAGATATTTTGTTCCTACGGTTTTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGG----------------------------------TTTC----TA--T-----T---TGTTTTTTCA--CTAATTTCCGTATTTTAGATTTGT-GTAATTTCTGTCCTTTGGTAGTCGTCAGAGTTATATGGTTGTTGTTTGCGACGCGGTGTTTCGTAAATCTAG-GAGTTATCTTGTTGCGTC-----TCSizeHit CountTotal NormTotal
No Reads
dp5
GTA-GCAT-CTGTAAGA-----TAATTGAATGTC--TTTAT----TT--T-----CTTATTATTT---------TTTTCTTTATTTTTGATTTGT-GTATCTTTTGATTTCTTGTAGTTGAGAGTGTTATCCCGCTATCTTTTAAAACTTGGTGTTTACTGAACCTAG-GTGTTAGCCTATTTCTTCTGTTCTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTA-GCAT-CTGTAAGA-----TAATTGAATGTC--TTTAT----TT--T-----C---TTATTATT-------TTTTTTTTATTTTTGATTTGT-GTATCTTTTGATTTCTTGTAGTTGAGAGTGTTATCCCGCTATCTTTTAGAACTTGGTGTTTACTGAACCTAG-GTGTTAGCTTATTTCTTCTGTTCTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................TATCCCGCTATCTTTTAGAACTTGG..........................................2521.002020000
....................................................................................................................................................TTGGTGTTTACTGAACCTAG-GTGT.....................2420.501010000
................................................................................................................................ATCCCGCTATCTTTTAGAACTTGG..........................................2420.501010000
.................................................................................................................................................AACTTGGTGTTTACTGAACCTAG-G........................2420.501010000
...............................................................................................................................TATCCCGCTATCTTTTAGAACTTGGTGT.......................................2820.501010000
droWil2
TTA-TATT-ATATATA-----TGTA-TACCTGG--------------TTT-----TTTGCTAAGGCT--TTCTTGTCGTTTTATTTTTGACTTGT-GAATTTTTTGCTTTTTCTTCGTAATAAATGTGACCCCCTTATCTTTAGTGACAATATGTTTTGAAAAGCGAG-GAGTCAATTTATTTCTTCTATTTTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................TATCTTTAGTGACAATATGTTTTGAA.................................26200.20402020
................................................................................................................................................TGACAATATGTTTTGAAAAGCGAG-GAG......................27200.15300030
.................................................................................TATTTTTGACTTGT-GAATTTTTTGCT......................................................................................26200.15301020
.............................................................................................................................................TAGTGACAATATGTTTTGAAAAGCGA...........................26200.10201010
.............................................................................................................................................TAGTGACAATATGTTTTGAAAAGCGAG-G........................28200.10202000
................................................................................................................................................TGACAATATGTTTTGAAAAGCGAG-GAGT.....................28200.10202000
.TA-TATT-ATATATA-----TGTA-TACCTGG--------------T..................................................................................................................................................25150.07101000
.................................................................................TATTTTTGACTTGT-GAATTTTTTGCTT.....................................................................................27200.05100010
.......................................................................................TGACTTGT-GAATTTTTTGCTTTTTCT................................................................................26200.05101000
.................................................................................................................................CCCCCTTATCTTTAGTGACAATATGTTT.....................................28200.05101000
.........................................................................................................................AAATGTGACCCCCTTATCTTTAG..................................................23200.05101000
........................................................................................................................TAAATGTGACCCCCTTATCTTTAG..................................................24200.05101000
............................................................................CGTTTTATTTTTGACTTGT-GAATTTT...........................................................................................26200.05101000
..............................................................................................................................TGACCCCCTTATCTTTAGTGA...............................................21200.05101000
................................................................................TTATTTTTGACTTGT-GAATTTTTTGCT......................................................................................27200.05100100
....................................................................................TTTTGACTTGT-GAATTTTTTGCTTTT...................................................................................26200.05101000
.................................................................................TATTTTTGACTTGT-GAATTTTTTTG.......................................................................................25200.05101000
...............................................................................TTTATTTTTGACTTGT-GAATTTTTTGC.......................................................................................27200.05100010
......................................................................................TTGACTTGT-GAATTTTTTGCT......................................................................................21200.05110000
.............................................................................................................................................................TGAAAAGCGAG-GAGTCAATTTATT............24200.05101000
.............................................................................................................................................................TGAAAAGCGAG-GAGTCAATTTATTTC..........26200.05100010
........................................................................................................................................................TGTTTTGAAAAGCGAG-GAGTCAATT................25200.05101000
...............................................................................................................................................GTGACAATATGTTTTGAAAAGCGAG-GAG......................28200.05101000
.............................................................................................................................................TAGTGACAATATGTTTTGAAAAGCGAG-.........................27200.05101000
..............................................................................................................................................AGTGACAATATGTTTTGAAAAGCGAG-G........................27200.05101000
.............................................................................................................................................................TGAAAAGCGAG-GAGTCAATTTATTT...........25200.05101000
..............................TGG--------------TTT-----TTTGCTAAGGCT--TTCTTG.......................................................................................................................24200.05101000
.................................................................................TATTTTTGACTTGT-GAATTTTTTGC.......................................................................................25200.05101000
.............................CTGG--------------TTT-----TTTGCTAAGGCT--TTCTTG.......................................................................................................................25200.05101000
............................................................................................................................................................TTGAAAAGCGAG-GAGTCAATTTATTTC..........27200.05101000
.........................................................................................................................AAATGTGACCCCCTTATCT......................................................19200.05101000
......................................................................................................................................TTATCTTTAGTGACAATATGTTT.....................................23200.05101000
......................................................................................................................................................TATGTTTTGAAAAGCGAG-GAGTCAATT................27200.05101000
...........................................................................................................................................TTTAGTGACAATATGTTTTGAAAAGCG............................27200.05100010
droVir3
GCA-GAAT-CTATAAAA------TA-TGACTGTA--ATGAC----TA--T-----T---TTGTCC---------TTTTTTTAATTTTTGATTTGT-GTATCTTTTGATCCTTGTGTGATATAAAGGTTGGACCTTTGTCCTGCTTGATTTTATGTTTAGTGAATCTAT-GCGTTAACTTATTTCTCCTATT-TCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................TTTGTCCTGCTTGATTTTATGTTTAG...................................2611.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
ATG-TAAT-TTGAACA-----GTTA-TATT----------------T--T-----ATTTTTTTAT---------TTTTCTTAACTTTAGACTTGT-GTAATTTTTGATTTTTTGATGTTAAAAAGGTTATTCCCTGATCTGATAATATCTTGTGTTTAGAAAATCTAG-CGGTCAATTTATTTCGTCTGTTTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................TTCCCTGATCTGATAATATCTTGTGTT......................................2713.003200001
...........................................................................................................................................TGATAATATCTTGTGTTTAGAAAATCT............................2712.002200000
................................................................................................................TGATGTTAAAAAGGTTATTCCCTGATC.......................................................2712.002200000
...............................................................................TTAACTTTAGACTTGT-GTAATTTTTGATT.....................................................................................2931.334400000
................................................................................................................TGATGTTAAAAAGGTTATTCCCTG..........................................................2411.001100000
..............................................................................................................................TTATTCCCTGATCTGATAATATCTTG..........................................2611.001100000
...........................................................................................................TTTTTTGATGTTAAAAAGGTTATTCCC............................................................2711.001100000
............................................................TTTAT---------TTTTCTTAACTTTAGACTTG....................................................................................................2511.001100000
.......................................................................................................................AAAAAGGTTATTCCCTGATCTGATAATA...............................................2811.001100000
........................................................................................................TGATTTTTTGATGTTAAAAAGGTTA.................................................................2511.001100000
...............................................................................................................................TATTCCCTGATCTGATAATATCTTGTGTT......................................2911.001100000
............................................................TTTAT---------TTTTCTTAACTTTAGACTTGT-GTA...............................................................................................2911.001100000
.............................................................................................................TTTTGATGTTAAAAAGGTTATTCCC............................................................2511.001100000
......................................................................................................................TAAAAAGGTTATTCCCTGATCTGATAA.................................................2711.001100000
............................................................................................................TTTTTGATGTTAAAAAGGTTATTCCC............................................................2611.001100000
.......T-TTGAACA-----GTTA-TATT----------------T--T-----ATTTTTTTAT---------........................................................................................................................2811.001100000
.TG-TAAT-TTGAACA-----GTTA-TATT----------------T--T-----ATTTTT.....................................................................................................................................2911.001100000
............................................................TTTAT---------TTTTCTTAACTTTAGACTTGT-GT................................................................................................2811.001100000
.................................................................................................................................TTCCCTGATCTGATAATATCTTGTGTTT.....................................2811.001100000
.............................................................TTAT---------TTTTCTTAACTTTAGACTTGT-G.................................................................................................2611.001100000
.........................................................................................................................................TCTGATAATATCTTGTGTTTAGAAA................................2511.001100000
...............................................................................TTAACTTTAGACTTGT-GTAATTTTTGAT......................................................................................2830.672200000
............................................................................................................................................................TAGAAAATCTAG-CGGTCAATTTATT............2530.672200000
..............................................................................................................................................TAATATCTTGTGTTTAGAAAATCTAG-CGG......................2930.672200000
......................................................................................TAGACTTGT-GTAATTTTTGATTTTTTGA...............................................................................2820.501100000
............................................................................................TGT-GTAATTTTTGATTTTTTGATGTTA..........................................................................2720.501100000
..........................................................................TTTTCTTAACTTTAGACTTGT-GTAATTT...........................................................................................2840.502200000
...........................................................................................TTGT-GTAATTTTTGATTTTTTGATGT............................................................................2620.501100000
............................................................................TTCTTAACTTTAGACTTGT-GTAATTT...........................................................................................2640.502200000
.........................................................................................ACTTGT-GTAATTTTTGATTTTTTGATG.............................................................................2720.501100000
.....................................................................................TTAGACTTGT-GTAATTTTTGATTTTT..................................................................................2630.331100000
..................................................................................................................................................ATCTTGTGTTTAGAAAATCTAG-CGG......................2530.331100000
...................................................................................................................................................TCTTGTGTTTAGAAAATCTAG-CGGTCAA..................2830.331100000
...................................................................................CTTTAGACTTGT-GTAATTTTTGATT.....................................................................................2530.331100000
....................................................................................TTTAGACTTGT-GTAATTTTTGATTTTTT.................................................................................2830.331100000
.................................................................................................................................................TATCTTGTGTTTAGAAAATCTAG-CGGTC....................2830.331100000
..............................................................................................................................................TAATATCTTGTGTTTAGAAAATCTAG-C........................2730.331100000
................................................................................................................................................................AAATCTAG-CGGTCAATTTATTTC..........2330.331100000
................................................................................TAACTTTAGACTTGT-GTAATTTTTGATT.....................................................................................2830.331100000
.................................................................................................................................................TATCTTGTGTTTAGAAAATCTAG-CGG......................2630.331100000
...........................................................................................................................................................TTAGAAAATCTAG-CGGTCAATTTAT.............2530.331100000
..................................................................................................................................................................ATCTAG-CGGTCAATTTATTTCGTCTGT....2730.331100000
............................................................................TTCTTAACTTTAGACTTGT-GTAATT............................................................................................2540.251100000
................................................................T---------TTTTCTTAACTTTAGACTTGT-GT................................................................................................2440.251100000
..........................................................................TTTTCTTAACTTTAGACTTGT-GTAATT............................................................................................2740.251100000
.............................................................................TCTTAACTTTAGACTTGT-GTAA..............................................................................................2240.251100000
.............................................................................TCTTAACTTTAGACTTGT-GTAATTTTC.........................................................................................2740.251000001
...................................................................................................ATTTTTGATTTTTTGATG.............................................................................1860.171100000
...............................................................AT---------TTTTCTTAACTTTAGACT......................................................................................................20100.101100000

Generated: 05/15/2015 at 04:11 PM