dsi_3599

exon [3r_16962155_16962647_+]; five_prime_UTR [3r_16962155_16962325_+]; intron [3r_16960832_16962154_+]

Sense Strand Reads

Anti-sense strand reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAGTCCAATCGTAAATCAACTCGTGGTTATCCTGTATAACTGTACCGCAACCATAAAGCCATAAAAACAATTGAACAAAAAATGTAAAGCTCGCGATAAGGGAGAGTGAGTGATAACGCCGGCTACCGTTAAAATCTTATCAACAGCAGACACCCAACTTCAGTTGCTAAAGTTGTTCAACATTTTCTTGACTTTCACAGATAGAGAAAGAGAGTTGTTGAGTTGAGTGTTCTTTGTATATGAAAAATGC ************************************************................................(((((((.((.......(((((((((...((((((...(((.((....................................)).)))...))))))...))))))))))))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553488 RT_0-2 hours eggs	M024 male body
...........................................................................CAAAAAATGTAAAGCTCGCGA..........................................................................................................................................................	21	0	1	1.00	1	1	0	0
........................................................................................................AGTGAGTGATAACGTC..................................................................................................................................	16	1	2	0.50	1	0	1	0
...........................................................................................................GAGTGGTATCGCCGGCT..............................................................................................................................	17	2	8	0.13	1	0	1	0
..............................................................................................................................................................................GGTCAACATTTTCTGGAC..........................................................	18	2	12	0.08	1	0	0	1

TTCAGGTTAGCATTTAGTTGAGCACCAATAGGACATATTGACATGGCGTTGGTATTTCGGTATTTTTGTTAACTTGTTTTTTACATTTCGAGCGCTATTCCCTCTCACTCACTATTGCGGCCGATGGCAATTTTAGAATAGTTGTCGTCTGTGGGTTGAAGTCAACGATTTCAACAAGTTGTAAAAGAACTGAAAGTGTCTATCTCTTTCTCTCAACAACTCAACTCACAAGAAACATATACTTTTTACG ************************************************................................(((((((.((.......(((((((((...((((((...(((.((....................................)).)))...))))))...))))))))))))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
............................TAGGACATTTTGACAT..............................................................................................................................................................................................................	16	1	5	0.20	1	1	0	0
...................................................................................................CAGTCTGACTCACTATTG.....................................................................................................................................	18	3	20	0.10	2	0	2	0
.......................................................TTCGGTAGTTTTGTTA...................................................................................................................................................................................	16	1	18	0.06	1	0	0	1

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim2	3r:16961955-16962204 +	dsi_3599	AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGAGA-----------A-AGA--------------G----AGTTGTTGAGT--TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------
droSec2	scaffold_0:17822980-17823229 +		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGAGA-----------A-AGA--------------G----AGTTATTGAGT--TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------
dm3	chr3R:4005520-4005772 -		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGAGA-----------A-AGAG---------------TTGAGTTGTTGAGT--TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------
droEre2	scaffold_4770:17574950-17575207 +		AAGT-------------------------C------CG------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGATA-----------G-AGAGCGA------------TTGAGTTGTTGAGT--TGAGTGTTTCCTT------------TGTAC-------ATGAAAAATGC------------------------------------------
droYak3	3R:8078854-8079126 -		AAGT-------------------------C------CA------------ATCGTAAATCAACTCGTAGTTGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AA---AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATATATA-----------G-AGAGAGATAGGGAGAGAGAGTGAGTTGTTGAGT--TGAGTGTTTCCTT------------TGTAT-------ATGAAAAATGC------------------------------------------
droEug1	scf7180000409490:732966-733264 +		AAGT-------------------------C------CAAAA---------ATCGTAAATCAACTCT----TGGTTATCCTG------------------TATA-----------ACTGTACTGC-----------------------------------------GC------------------A---------------------GCCATAA--AGCCATAAAAAAACAAACAACACAACCAACAAAAAACACAGAAAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------T-GTGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---AATGCTAAAGTTGTTTCCTAAAACCACAAAAAT----AT---TTCTT---GACTTCCACAG------------------------------------------AGTTTTCGTGTGTTTCGTGTG--CTA------------TATTTCTCAA--ATGGAAAATGC------------------------------------------
droBia1	scf7180000302402:6683399-6683625 -		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----CGGTTATCCTG------------------TACA-----------ACTGTACC-------------------------------------------C-------------------C---------------------GCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAGGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------CAG----------------CCA------------------------------ACTTC---------TGAAGTTGTTC-----------AA---CCGAAAT---TTCTT---GTTTTCCCCAGAGTG--A------AA---G-AAA--------------------------------------------T------------TGTGT-------ATGAAAAATGC------------------------------------------
droTak1	scf7180000415711:1729300-1729541 -		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------AC------------------A---------------------GCCATAA--AACCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------CAC----------------CCA------------------------------ACTTCTAAAGTTGCTAAAGTTGTTC-----------AA---A----AT---TTCTT---GATTTCCACAGCGCGAGA-----------G-AGA--------------G----AGT-------------GTGTG--TTT------------TGT---------ATGAAAAATGC------------------------------------------
droEle1	scf7180000491212:1846482-1846753 +		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG-TTTAACTAT-ATAACTGTATA-----------ACTGTACCGC-----------------------------------------GC------------------A---------------------GCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CCGGG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------GTTGC-ACTTCA---GTTGCTAAAGTTGTCG-----------AA---T----AT---TTCTTGTTGACTTCCACAGAAAGAGA-----------G-AGAG------------AG----AGTTGTTTT-------GTGTT--CT--------------------GAACTCAGAAAAATGC------------------------------------------
droRho1	scf7180000779418:27978-28221 +		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACCGC-----------------------------------------GC------------------A---------------------CCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AA---AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTCG-----------AA---T----AT---TTCTT---GACTTCCACAGA----GA-----------A-A----------------G----AGTTGTTGAGTGTTGAGT-----CTT------T-----TGACA-------AAAAAAAATGC------------------------------------------
droFic1	scf7180000454106:577086-577325 +		AAGT-------------------------C------AA------------ATCGTAAATCAACTCG----TGGTTATCCTG-T---------ATAGCTGTATA-----------ACTGTACC-------------------------------------------GC------------------G---------------------CCCATAA--AGCCAT------------------------------------AAAAAACA----------ATTGAACA-AA---AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCGACA---------GCAGACAC----------------CAA----------CGAGGCCCA------------------------------ACTTCA---GTTGCTAAAGTTGTTG-----------AA--------AT---TTCTT---GACTTCCA----------------------------------------G----AGTTGTTGTG----GTGTGTT--C----------------------------GGAAAATGC------------------------------------------
droKik1	scf7180000302313:550677-550930 +		AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TACA-----------ACTGTACACC-----------------------------------------GC------------------A---------------------CCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AA---AATGTAAAGCTC-------------C---C-GCGATAAGAA-TGAG-AGCG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAA----------------C-------------------CAAAATAAAATACAGAAAATA---AAACAAA-ACTTCA---GTTGCTAAAGTTG--------------A--------AAT---TTCTT---GACTTGCAGAGCGCG------------------A--------------G----AGTTATTGTG-----CG-GTT---------------------------------AAAATGC------------------------------------------
droAna3	scaffold_13340:21459620-21459914 -		AAGT-------------------------C------CAAA-GCAATGACGATCGTAAATCAACTCACTACTGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------C-----------------------ATAAAACTCAAAGCCATGGCCATAAACAGCCAT---------------------------------------------------------------------------AGCT------------------GGGCGATAGGG---GAG-AGAG----------AGTGATAACG-------GCCC-GG------------CTACCGTTAGAATCTTATCAACCAAATAAGAAGAAGAAGAA-------GCAAAGACCACCAACA-CCAACA--------------------------------CCACAACTT----------TAAAAAA---G-----------A--------AAT---TTCTT---AACTTACAGAGGTCTAAAGAGGGAAAAAAAAAGA--GGTGGAGAGAAAAGGCCAATTAT------------------TT------------TGTGG-------CT--AAAATGC------------------------------------------
droBip1	scf7180000396413:1077890-1078164 +		AAGT-------------------------C------GAAAAGCACTGACGATCGTAAATCAACTCA----CGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------C------------------------------------------CCATAA--AGCCAT------------------------------------AAAAA-GC----------ATTCAACAAAAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGCG----------AGTGATAACG-------GCCC-GG------------CTACCGTTAGAATCTTATCAACAA---CAGAAGCAGACAC----------------C-------------------AA-A-------------CCTC---CAACCAC-CTTTAA---GTT--TAAAAAAATCG-----------A--------AAT---TTCTT---AACTTGCAGAGGGA----------AAGATAAAGAGAG------AAAGAAAGCCAGTTGTT-----------------TT------------TGTGG-------CT--AAAATGC------------------------------------------
dp5	2:13063882-13064216 +		AG-TCT---GG---------TCTCGGATCTGTAGAGCA------------GCCGTAAATCAACCTG----CGGTTATCCTAGCCAAACTGCCA---C--CACA-----------ACTGTACC-------------------------------------------GT------------TACCGTGCCCGTAAAG--------------TACAT--AGCTAT------------------------------------AAAAA-CA----------ATTGAACA-AAAAGAATGTAAGGCTTGAAGTGCGTTCGGG---T-GCGATAAGGAGTGCAGAGTGTTGGGG--CAGCTGATAAGG---------CC-AGCTACCGCTACAGCTACCGTTAGAATCTTATCAAGC---------GCAGACTTCTCGAAAGG-----------------------------------------------AAAGCCACCAA-ATTTCA---GCTTCTAAAGT---AC-----------AA---A---AAT---TTCTG---AAATTGCAGCG-----------------------------------------------------------CGTT--CTGTGTGGTTAGGCG----CGTGAA--CAGGAAAATGT------------------------------------------
droPer2	scaffold_0:7390396-7390789 -		AG-TCT---GG---------TCTCGGATCTGTAGAGCA------------GCCGTAAATCAACCTG----CGGTTATCCTAGCCAAACTGCCACCAC--CACA-----------ACTGTACC-------------------------------------------GTTACCGTTACCGTTACCGTGCCCGTAAAG--------------TACAT--AGCTAT------------------------------------AAAAAACA----------ATTGAACA-AAAAGAATGTAAGGCTTGAAGTGCGTTCGGG---T-GCGATAAGGAGTGCAGAGTGTTGGGG--CAGCTGATAAGG---------CC-AGCTACCGCTACAGCTACCGTTAGAATCTTATCAAGC---------GCAGACACCTCGAAAGG-----------------------------------------------AAAGCCACCAA-ATTTCA---GCTTCTAAAGT---AC-----------AA---A---AAT---TTCTGG--AAATTGCAGCG-----------------------------------------------------------CGTT--CTGTGTGGTTAGGCG----CGTGAA--CAGGAAAATGTGTGGTTGCTGAGAAGCCAGCGCTACTTGCCACTGCAACGCAC
droWil2	scf2_1100000004943:14106112-14106525 -		ATGT-TTTTGGGCTCCTCAATATCGGA-CTACCGGACA------------ATCGTAAATCAACTTT----TCG------TG------------------TGTA--------TCAACTGTACACTCGTTTATTGGATGGAATACCTACATATGTACATATATTGGAGC------------------T---------------------ACTTTGG--GGCTAT------------------------------------AAAAA-GAAAAAGAAATGAAAGAACA-TTG--AATGTAATGCC-----------CAGATAAC-GTGATGAGG---GAGAAGTGTTTGAATTTTGTTGATAACGTCTCAATGACC-GG------------CTACCGTTAAAATCTTATCAATTGCCACCGGAGCAGAGAAATTGAAGAGTAAATAACACATAAACCCAAC--------------------------AAACCAAAAAA-AATTAA---AATTAAAAAGA---AA-----------AA---A----ATTATTT-CC---AATTTTCAGAGTG-------------------------------------------------------TGTGAT--ATT------------CGTA---------AAGAAAATGTGTTGAAAAT--CGATCTAATATTATCTCCCAATTCAAA--AT
droGri2	scaffold_14906:7425491-7425581 +		TGGC-------------------------TGCCGCGCA------------ATTGTAAATCAATTGG----TCAT----------------------------AACTGAGTGCCAACTGTACA------------------------------------------------------------------------------------------CA--AGCTAT------------------------------------AAAAA-GA----------AATTAGAAACCA--AATATAAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGAGA-----------A-AGA--------------G----AGTTGTTGAGT--TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................CA-AAA--AATGTAAAGCT------------------C-GCGA.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGAGA-----------A-AGA--------------G----AGTTATTGAGT--TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGAGT--TGAGTGTT--CTT------------.................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--TGAGTGTT--CTT------------TGTAT-------ATGAAAA..............................................	25	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------	27	1	1.00	1	0	0	1	0

dm3

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGAGA-----------A-AGAG---------------TTGAGTTGTTGAGT--TGAGTGTT--CTT------------TGTAT-------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................ATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTC-----------AA---C---ATT---TTCTT---GA..........................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------TTGAGTTGTTGAGT--TGAGTG....................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GTGATAACG---------CC-GG------------CTACCGTT...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AAGCT------------------C-GCGATAAGG---GAG-A....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGAACA-AAA--AATGTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------TTGAGTTGTTGAGT--TGAGTGTT--................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAATCTTATCAACA---------GCAGA..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAGT-------------------------C------CG------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATAGATA-----------G-AGAGCGA------------TTGAGTTGTTGAGT--TGAGTGTTTCCTT------------TGTAC-------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACAGATAGATA-----------G-AGAGC........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GATAACG---------CC-GG------------CTACCGTT...........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------G-AGAGCGA------------TTGAGTT...................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAGT--TGAGTGTTTCCTT------------T................................................................	22	1	1.00	1	0	0	0	1	0	0	0

droYak3

AAGT-------------------------C------CA------------ATCGTAAATCAACTCGTAGTTGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------GC------------------A---------------------ACCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AA---AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTTC-----------AA---C---ATT---TTCTT---GACTTTCACAGATATATA-----------G-AGAGAGATAGGGAGAGAGAGTGAGTTGTTGAGT--TGAGTGTTTCCTT------------TGTAT-------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGTGAGTTGTTGAGT--TGA.......................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................AA---AATGTAAAGCT------------------C-GCGA.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGTTC-----------AA---C---ATT---TTCTT---GACT........................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AAGT-------------------------C------CAAAA---------ATCGTAAATCAACTCT----TGGTTATCCTG------------------TATA-----------ACTGTACTGC-----------------------------------------GC------------------A---------------------GCCATAA--AGCCATAAAAAAACAAACAACACAACCAACAAAAAACACAGAAAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------T-GTGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---AATGCTAAAGTTGTTTCCTAAAACCACAAAAAT----AT---TTCTT---GACTTCCACAG------------------------------------------AGTTTTCGTGTGTTTCGTGTG--CTA------------TATTTCTCAA--ATGGAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----CGGTTATCCTG------------------TACA-----------ACTGTACC-------------------------------------------C-------------------C---------------------GCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAGGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------CAG----------------CCA------------------------------ACTTC---------TGAAGTTGTTC-----------AA---CCGAAAT---TTCTT---GTTTTCCCCAGAGTG--A------AA---G-AAA--------------------------------------------T------------TGTGT-------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------AC------------------A---------------------GCCATAA--AACCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------CAC----------------CCA------------------------------ACTTCTAAAGTTGCTAAAGTTGTTC-----------AA---A----AT---TTCTT---GATTTCCACAGCGCGAGA-----------G-AGA--------------G----AGT-------------GTGTG--TTT------------TGT---------ATGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG-TTTAACTAT-ATAACTGTATA-----------ACTGTACCGC-----------------------------------------GC------------------A---------------------GCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CCGGG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------GTTGC-ACTTCA---GTTGCTAAAGTTGTCG-----------AA---T----AT---TTCTTGTTGACTTCCACAGAAAGAGA-----------G-AGAG------------AG----AGTTGTTTT-------GTGTT--CT--------------------GAACTCAGAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TATA-----------ACTGTACCGC-----------------------------------------GC------------------A---------------------CCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AA---AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAC----------------C-------------------CA------------------------------ACTTCA---GTTGCTAAAGTTGTCG-----------AA---T----AT---TTCTT---GACTTCCACAGA----GA-----------A-A----------------G----AGTTGTTGAGTGTTGAGT-----CTT------T-----TGACA-------AAAAAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGT-------------------------C------AA------------ATCGTAAATCAACTCG----TGGTTATCCTG-T---------ATAGCTGTATA-----------ACTGTACC-------------------------------------------GC------------------G---------------------CCCATAA--AGCCAT------------------------------------AAAAAACA----------ATTGAACA-AA---AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGTG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCGACA---------GCAGACAC----------------CAA----------CGAGGCCCA------------------------------ACTTCA---GTTGCTAAAGTTGTTG-----------AA--------AT---TTCTT---GACTTCCA----------------------------------------G----AGTTGTTGTG----GTGTGTT--C----------------------------GGAAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGT-------------------------C------CA------------ATCGTAAATCAACTCG----TGGTTATCCTG------------------TACA-----------ACTGTACACC-----------------------------------------GC------------------A---------------------CCCATAA--AGCCAT------------------------------------AAAAA-CA----------ATTGAACA-AA---AATGTAAAGCTC-------------C---C-GCGATAAGAA-TGAG-AGCG----------AGTGATAACG---------CC-GG------------CTACCGTTAAAATCTTATCAACA---------GCAGACAA----------------C-------------------CAAAATAAAATACAGAAAATA---AAACAAA-ACTTCA---GTTGCTAAAGTTG--------------A--------AAT---TTCTT---GACTTGCAGAGCGCG------------------A--------------G----AGTTATTGTG-----CG-GTT---------------------------------AAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAGT-------------------------C------CAAA-GCAATGACGATCGTAAATCAACTCACTACTGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------C-----------------------ATAAAACTCAAAGCCATGGCCATAAACAGCCAT---------------------------------------------------------------------------AGCT------------------GGGCGATAGGG---GAG-AGAG----------AGTGATAACG-------GCCC-GG------------CTACCGTTAGAATCTTATCAACCAAATAAGAAGAAGAAGAA-------GCAAAGACCACCAACA-CCAACA--------------------------------CCACAACTT----------TAAAAAA---G-----------A--------AAT---TTCTT---AACTTACAGAGGTCTAAAGAGGGAAAAAAAAAGA--GGTGGAGAGAAAAGGCCAATTAT------------------TT------------TGTGG-------CT--AAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................AGCT------------------GGGCGATAGGG---GAG-.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................AGCT------------------GGGCGATAGGG---GAG-AGAG----------A......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
..........................................................................TATCCTG------------------TATA-----------ACTGTACC-------------------------------------------C-----------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................TATCCTG------------------TATA-----------ACTGTACC-------------------------------------------C-----------------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................AATCAACTCACTACTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..........................................................................TATCCTG------------------TATA-----------ACTGTACC-------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

AAGT-------------------------C------GAAAAGCACTGACGATCGTAAATCAACTCA----CGGTTATCCTG------------------TATA-----------ACTGTACC-------------------------------------------C------------------------------------------CCATAA--AGCCAT------------------------------------AAAAA-GC----------ATTCAACAAAAA--AATGTAAAGCT------------------C-GCGATAAGG---GAG-AGCG----------AGTGATAACG-------GCCC-GG------------CTACCGTTAGAATCTTATCAACAA---CAGAAGCAGACAC----------------C-------------------AA-A-------------CCTC---CAACCAC-CTTTAA---GTT--TAAAAAAATCG-----------A--------AAT---TTCTT---AACTTGCAGAGGGA----------AAGATAAAGAGAG------AAAGAAAGCCAGTTGTT-----------------TT------------TGTGG-------CT--AAAATGC------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AG-TCT---GG---------TCTCGGATCTGTAGAGCA------------GCCGTAAATCAACCTG----CGGTTATCCTAGCCAAACTGCCA---C--CACA-----------ACTGTACC-------------------------------------------GT------------TACCGTGCCCGTAAAG--------------TACAT--AGCTAT------------------------------------AAAAA-CA----------ATTGAACA-AAAAGAATGTAAGGCTTGAAGTGCGTTCGGG---T-GCGATAAGGAGTGCAGAGTGTTGGGG--CAGCTGATAAGG---------CC-AGCTACCGCTACAGCTACCGTTAGAATCTTATCAAGC---------GCAGACTTCTCGAAAGG-----------------------------------------------AAAGCCACCAA-ATTTCA---GCTTCTAAAGT---AC-----------AA---A---AAT---TTCTG---AAATTGCAGCG-----------------------------------------------------------CGTT--CTGTGTGGTTAGGCG----CGTGAA--CAGGAAAATGT------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTTAGGCG----CGTGAA--C....................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

AG-TCT---GG---------TCTCGGATCTGTAGAGCA------------GCCGTAAATCAACCTG----CGGTTATCCTAGCCAAACTGCCACCAC--CACA-----------ACTGTACC-------------------------------------------GTTACCGTTACCGTTACCGTGCCCGTAAAG--------------TACAT--AGCTAT------------------------------------AAAAAACA----------ATTGAACA-AAAAGAATGTAAGGCTTGAAGTGCGTTCGGG---T-GCGATAAGGAGTGCAGAGTGTTGGGG--CAGCTGATAAGG---------CC-AGCTACCGCTACAGCTACCGTTAGAATCTTATCAAGC---------GCAGACACCTCGAAAGG-----------------------------------------------AAAGCCACCAA-ATTTCA---GCTTCTAAAGT---AC-----------AA---A---AAT---TTCTGG--AAATTGCAGCG-----------------------------------------------------------CGTT--CTGTGTGGTTAGGCG----CGTGAA--CAGGAAAATGTGTGGTTGCTGAGAAGCCAGCGCTACTTGCCACTGCAACGCAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCCAGCGCTACTTGCC............	20	1	1.00	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA--CAGGAAAATGTGTGGTTG...................................	22	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGTGGTTGCTGAGAA............................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA--CAGGAAAATGTGTGGT.....................................	19	1	1.00	1	0	0	1	0	0	0

droWil2

ATGT-TTTTGGGCTCCTCAATATCGGA-CTACCGGACA------------ATCGTAAATCAACTTT----TCG------TG------------------TGTA--------TCAACTGTACACTCGTTTATTGGATGGAATACCTACATATGTACATATATTGGAGC------------------T---------------------ACTTTGG--GGCTAT------------------------------------AAAAA-GAAAAAGAAATGAAAGAACA-TTG--AATGTAATGCC-----------CAGATAAC-GTGATGAGG---GAGAAGTGTTTGAATTTTGTTGATAACGTCTCAATGACC-GG------------CTACCGTTAAAATCTTATCAATTGCCACCGGAGCAGAGAAATTGAAGAGTAAATAACACATAAACCCAAC--------------------------AAACCAAAAAA-AATTAA---AATTAAAAAGA---AA-----------AA---A----ATTATTT-CC---AATTTTCAGAGTG-------------------------------------------------------TGTGAT--ATT------------CGTA---------AAGAAAATGTGTTGAAAAT--CGATCTAATATTATCTCCCAATTCAAA--AT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................AATGCC-----------CAGATAAC-GTGATGAGG---GA.......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGGAGCAGAGAAATTGAAGAGT.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
........................................................................................................................CACTCGTTTATTGGATGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............CTCCTCAATATCGGA-CTACCGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................CTACCGTTAAAATCTTATCAAT.............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................GTAATGCC-----------CAGATAAC-GTGATGAGG---.........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................ATGAAAGAACA-TTG--AATGTAATGCC-----------C.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT-CC---AATTTTCAGAGT................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................ATATTGGAGC------------------T---------------------ACTTTGG--GGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................TAACGTCTCAATGACC-GG------------CTACCGTTA..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
................................................................................................................CAACTGTACACTCGTTTATTGGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0

droGri2

TGGC-------------------------TGCCGCGCA------------ATTGTAAATCAATTGG----TCAT----------------------------AACTGAGTGCCAACTGTACA------------------------------------------------------------------------------------------CA--AGCTAT------------------------------------AAAAA-GA----------AATTAGAAACCA--AATATAAAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-23.0	-22.4	-22.3	-22.3

dsi_3599

3r:16962005-16962154 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads