ID:

dsi_3588

 Coordinate:

3r:10658207-10658356 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10658357_10658464_+]; exon [3r_10658357_10658464_+]; intron [3r_10657273_10658356_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTTAATTTTTTTTTTTTTTCGCATACGGCGGGTGCCAGATCCTCCAATTATTTCGGTTGTTTCTATTTTATTTTGTCATTTTGTCTATTTGGTTTTTATTTTATTTTCAATGCTACACGCATGCGATTTGCATGTCTTATCGGCTTGGAAAATTTTGTATTTATTTGGAATGTTTATTCACTTGTACCTTCGATACAGGCCCCCAGTCACCTGAAGTTCAACCCGTACATCCGCCGCGGATACCGCAC
**************************************************..((....(((....(((..........(((....((((...(((...(((...((((((...(((....((((((.....))))))......)))...))))))...)))...))))))))))...........)))....)))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
..................................................................................................................................................................................TTCAATTGTACCTTCGATA..................................................... 19 1 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................TACATCCGCCGCGGATACCG... 20 0 1 1.00 1 0 0 0 1 0
..TTTAATTTTTTTTTTTTTTCGGATTC.............................................................................................................................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................TTTATTTACTTGTACCTTCGA....................................................... 21 1 1 1.00 1 1 0 0 0 0
....TAATTTTTTTTTTTTTTCGGATTC.............................................................................................................................................................................................................................. 24 2 2 0.50 1 0 0 1 0 0
..TTTAATTTTTTTTTTTTTTCGGA................................................................................................................................................................................................................................. 23 1 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................TTGGATTGTTCATTCACT.................................................................. 18 2 3 0.33 1 0 1 0 0 0
..............................................................................................................................................................................................................................ACCCCTATATCCACCGCGGA........ 20 3 3 0.33 1 0 0 1 0 0
.GTTTAATTTTTTTTTTTTTTCGGA................................................................................................................................................................................................................................. 24 2 4 0.25 1 1 0 0 0 0
.............................................................................TCATTTTGTCTATATGG............................................................................................................................................................ 17 1 5 0.20 1 0 0 1 0 0
..............................................................TTCTATTATATTTTGTC........................................................................................................................................................................... 17 1 8 0.13 1 0 0 0 1 0
....TAATTTTTTTTTTTTTTCGGATT............................................................................................................................................................................................................................... 23 2 9 0.11 1 0 0 1 0 0
........................ATACGGAGGGTGCAAG.................................................................................................................................................................................................................. 16 2 19 0.11 2 0 0 0 2 0
TGTTTAATTTTTTTTTTTTTTCGGAT................................................................................................................................................................................................................................ 26 3 10 0.10 1 0 0 1 0 0
CTTTTAATTTTTTTTTT......................................................................................................................................................................................................................................... 17 0 12 0.08 1 0 1 0 0 0
.............................................................................................................................................................................................GTTCGATACCGGCCCC............................................. 16 2 12 0.08 1 0 1 0 0 0
.........................................................................................................................................................CTTTAGTATTTATTTGGAA.............................................................................. 19 2 12 0.08 1 0 0 0 0 1
.TTTTAATTGCATTTTTTTTTCGCA................................................................................................................................................................................................................................. 24 3 15 0.07 1 0 0 1 0 0
..............................................................................................................................................................................................................................ACCCCTATATCCACCGCG.......... 18 3 20 0.05 1 0 0 1 0 0
.......................................................................................................................................................................TGGATTGTTCATTCACT.................................................................. 17 2 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

GAAAATTAAAAAAAAAAAAAAGCGTATGCCGCCCACGGTCTAGGAGGTTAATAAAGCCAACAAAGATAAAATAAAACAGTAAAACAGATAAACCAAAAATAAAATAAAAGTTACGATGTGCGTACGCTAAACGTACAGAATAGCCGAACCTTTTAAAACATAAATAAACCTTACAAATAAGTGAACATGGAAGCTATGTCCGGGGGTCAGTGGACTTCAAGTTGGGCATGTAGGCGGCGCCTATGGCGTG
**************************************************..((....(((....(((..........(((....((((...(((...(((...((((((...(((....((((((.....))))))......)))...))))))...)))...))))))))))...........)))....)))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 M024
male body		 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................................................................AGTTCAAATTGGGCATGT................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCAAATTTGGCATGCAG................. 19 3 10 0.70 7 0 7 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCTTCAAATTTGGCATG.................... 18 3 20 0.65 13 4 5 0 0 0 4 0 0 0
.......................................CTAGGAGGTTGGTATAGCCAAC............................................................................................................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GACTTCAAATTTGGCATGT................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGCTTCAAGTTGGGCATG.................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCTTCAAATTGGGCATGC................... 19 3 4 0.50 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTTGAAGTTGGGCTTGTAGGCG.............. 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACTTCAAGTTTGGCATGC................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................AAAGTGACGATGTGCG................................................................................................................................ 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCAAATTGGGCATGC................... 17 2 6 0.33 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCTTCAAGTTTGGCATGC................... 19 3 9 0.33 3 3 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCAAATTTGGCATGTTG................. 19 3 19 0.26 5 1 4 0 0 0 0 0 0 0
.........................................................................................................................GCACGCTGAACGTACACAAT............................................................................................................. 20 3 8 0.25 2 0 1 0 0 0 0 1 0 0
......................................................................................................................................................................................................................CTTCAATTTGGGCATGCTG................. 19 3 5 0.20 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CCGGGGGTCAGTAGCCT.................................. 17 2 11 0.18 2 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................AGGCTTCAAGTTTGGCATG.................... 19 3 12 0.17 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCAAGTTTGGCATGC................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GACTTCAAATTTGGCATGC................... 19 3 13 0.15 2 0 2 0 0 0 0 0 0 0
..........................................................................................................AAAGTGACGATGTGC................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GGCTTCAAATTGGGAATGT................... 19 3 14 0.14 2 2 0 0 0 0 0 0 0 0
...........AAAAAAAAAAGAGTCTGCCGT.......................................................................................................................................................................................................................... 21 3 15 0.13 2 0 0 0 1 0 0 0 0 1
....................................................................................................................................................................................................................GGCTTCAAGTTAGGCATGC................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................GCTGAACGTACACAAT............................................................................................................. 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................................................................CTTCAAGTTTGGCATGCTG................. 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0
..........AAAAAAAAAAAGGGTATGGCAC.......................................................................................................................................................................................................................... 22 3 11 0.09 1 0 0 0 0 1 0 0 0 0
.......AAAAAAAAAAAAAAGCTTGTGCCT........................................................................................................................................................................................................................... 24 3 12 0.08 1 0 0 0 0 1 0 0 0 0
..........AAAAAAAAAAATCGCAGGCCGC.......................................................................................................................................................................................................................... 22 3 12 0.08 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................ATGAAGGCGGCTACTATGGCG.. 21 3 13 0.08 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................AGCTTCAAGTTGGGCATGC................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GTCTTCAAATTTGGCATGT................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTGGACTTTAAGATGGG........................ 17 2 15 0.07 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GGCTTCAACTTTGGCATGT................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GGGTCAAAGGACTTCAA.............................. 17 2 17 0.06 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCTTCAAGTTTGGCATGC................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TGGACTTGAAGTTGG......................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................CACGCTGAACGTACACAAT............................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................GGAAGGTATGTCCTGGTG............................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 10:46 AM