ID:

dsi_3581

 Coordinate:

2r:5856827-5856884 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.9

Flybase annnotation

exon [2r_5856576_5856826_+]; CDS [2r_5856576_5856826_+]; CDS [2r_5856885_5857399_+]; exon [2r_5856885_5857399_+]; intron [2r_5856827_5856884_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------##################################################
TCAGTAGATGAAGGCACTCCGGACTTGAATTACGAGACGGGAATCGAAGAGTAAGTCCTTGTATCATTGTACCAGGACTACAACTTTATAGCTCTGACCACAAACCAGGTTGGACAAATTGTTGCACTCCGTGGAGCAGCCCTTCAAGCCAGGCAGAG
**********************************************************........((((..((((.(((........))).))))...))))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
............................................................................................TCTGACCTCAAATCAGGTAGGA............................................ 22 3 1 4.00 4 0 0 3 1 0 0 0 0
...............................................................................................GACCTCAAATCAGGTAGGA............................................ 19 3 6 3.50 21 12 0 1 0 4 0 3 1
..............................................................................................TGACCTCAAATCAGGTAGGA............................................ 20 3 3 3.00 9 3 0 1 0 5 0 0 0
............................................................................................TCTGACCTCAAATCAGGTAGGAC........................................... 23 3 1 2.00 2 1 0 0 1 0 0 0 0
..............................................................................................................TGGACAAATTGTTGCACTCCGTGGA....................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................TTGTATCATTGTACCAGGACT............................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0
..............................................................................................................TGGACAAATTGTTGCACTCCGTGGAGC..................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................AAATTGTTGCACTCCGTGGAG...................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................ACTACAACTTTATAGCTCTGA............................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....TAGATGAAGGCACTCCGGACT..................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.CAGTAGATGAAGGCACTCCGG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................................................................TTGGACAAATTGTTGCACTCCGTGGA....................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
........TGAAGGCACTCCGGACTTGAATTACG............................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................AGAGTAAGTCCTTGTATCATT.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................ATAGCTCTGACCACAAACC.................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................CAAATTGTTGCACTCCGTGGA....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
........TGAAGGCACTCCGGACTTGAATTACGA........................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................TCTGACCTCAAATCAGGT................................................ 18 2 5 0.20 1 0 0 1 0 0 0 0 0
.......................CGTGAATTACGTGACGGCA.................................................................................................................... 19 3 8 0.13 1 0 0 0 1 0 0 0 0
........TGAAAGCACTCCGGA....................................................................................................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

AGTCATCTACTTCCGTGAGGCCTGAACTTAATGCTCTGCCCTTAGCTTCTCATTCAGGAACATAGTAACATGGTCCTGATGTTGAAATATCGAGACTGGTGTTTGGTCCAACCTGTTTAACAACGTGAGGCACCTCGTCGGGAAGTTCGGTCCGTCTC
****************************************************........((((..((((.(((........))).))))...))))...********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
..........................................TAGCTTCTCATTCAGGAACATAGTAACAT....................................................................................... 29 0 1 2.00 2 1 0 0 0 0 1
.......................................CCTTAGCTTCTCATTCAGGAACAT............................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0
........................................................................................................................................GTCGGGAAGTTCGGTCCGTC.. 20 0 1 2.00 2 0 2 0 0 0 0
............................................................................................AGACTGGTGTTTGGTCCAACC............................................. 21 0 1 1.00 1 0 0 1 0 0 0
..............................................................................ATGTTGAAATATCGAGACTGG........................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........TCCGTGAGGCCTGAACTTAAT.............................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
....................................TGCCCTTAGCTTCTCATTCAG..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................AGATGTTGAAATATCGAGACTG............................................................ 22 1 1 1.00 1 0 0 0 0 1 0
.................................................TCATTCAGGAACATAGTAACATGG..................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TCGGGAAGTTCGGTCCGTCTC 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................GCAACACGTCGGGAAGTTTG......... 20 3 6 0.17 1 0 0 0 0 1 0
..................................................................AACGTGGTCCTGATG............................................................................. 15 1 8 0.13 1 0 0 0 1 0 0
.....................................................................ATGGTCCTGATCTTG.......................................................................... 15 1 9 0.11 1 0 0 0 1 0 0
................................CCTCTGCCCTTAGCTTG............................................................................................................. 17 2 18 0.06 1 0 0 0 1 0 0
......................TGAACTTAATGCTGT......................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 01:29 AM