ID:dsi_3562 |
Coordinate:3r:4720300-4720449 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3r_4720182_4720299_+]; CDS [3r_4720182_4720299_+]; intron [3r_4720300_4720840_+]
No Repeatable elements found
| ##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAGCCAAGATGGCCGTGAGACTGGCCAACTTTATTAGCGCCTTTCTGCAGGTAAGCAAACGAATCAGAGCAAAGGATTCCCATCGCCTTCACGCTAAATGAAGAGCAATAATTGATAACCCGACACCTATTAAGAGCCTTCGACGACGGCTCTTGAAAACTTCTCAAGTGTAAATTATAATTTTCCACGCGTAATTCAACTTCCTCGAATTTCCTGCATTGCCAGTTTCTCGGTTCTTACCGATGCTGCT **************************************************....((....(((((.........))))).....))....((((.....(((((...((((((.(((............(((((((((.((...)).)))))))))............))).))))))..)))))...))))........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
M023 head |
SRR618934 dsim w501 ovaries |
M024 male body |
GSM343915 embryo |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............CGTGAGACTGGCCAACTTTATTAG..................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............GTGAGACTGGCTAACT............................................................................................................................................................................................................................ | 16 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................CCTTCGATGACGGCTCTT................................................................................................ | 18 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............GTGAGACTGGATAACTTTGT........................................................................................................................................................................................................................ | 20 | 3 | 8 | 0.38 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............GTGAGACTGGCTAGCTTTAC........................................................................................................................................................................................................................ | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................AAGAGCAATATTTGATA..................................................................................................................................... | 17 | 1 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................CCTTCGATGTCGGCTCTTAAA............................................................................................. | 21 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................................................................................................................................................TTCTCGGTTCTTAAC......... | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................TTCGATGTCGGCTCTTAAAA............................................................................................ | 20 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..GCCAAGACCGTCGTGAGAC..................................................................................................................................................................................................................................... | 19 | 3 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............TGAGACTGGATAACTTTGT........................................................................................................................................................................................................................ | 19 | 3 | 20 | 0.10 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................................TTAAGAGCCTTCGGC.......................................................................................................... | 15 | 1 | 11 | 0.09 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..............GTGAGACTGGATAACTTT.......................................................................................................................................................................................................................... | 18 | 2 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................ACCACACCTAATAAGAGCC................................................................................................................ | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........AGGCCCGTGAGACTGG.................................................................................................................................................................................................................................. | 16 | 2 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................GTCGGCTCATGAAAACTGC....................................................................................... | 19 | 3 | 17 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................ATTCCCCTCGGCTTCAC.............................................................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
TTCGGTTCTACCGGCACTCTGACCGGTTGAAATAATCGCGGAAAGACGTCCATTCGTTTGCTTAGTCTCGTTTCCTAAGGGTAGCGGAAGTGCGATTTACTTCTCGTTATTAACTATTGGGCTGTGGATAATTCTCGGAAGCTGCTGCCGAGAACTTTTGAAGAGTTCACATTTAATATTAAAAGGTGCGCATTAAGTTGAAGGAGCTTAAAGGACGTAACGGTCAAAGAGCCAAGAATGGCTACGACGA
**************************************************....((....(((((.........))))).....))....((((.....(((((...((((((.(((............(((((((((.((...)).)))))))))............))).))))))..)))))...))))........************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
M024 male body |
M023 head |
|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................ACTTCTCGTTATTAAC........................................................................................................................................ | 16 | 0 | 1 | 10.00 | 10 | 4 | 5 | 1 | 0 | 0 |
| .................................................................................................AACTTCTCGTTATTAAC........................................................................................................................................ | 17 | 1 | 3 | 3.00 | 9 | 5 | 3 | 1 | 0 | 0 |
| ................................................................................................CAACTTCTCGTTATTAAC........................................................................................................................................ | 18 | 2 | 9 | 1.33 | 12 | 8 | 3 | 1 | 0 | 0 |
| .............................................................................................GAGCAACTTCTCGTTATTAAC........................................................................................................................................ | 21 | 3 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................ACTTCTGGTTATTAAC........................................................................................................................................ | 16 | 1 | 7 | 0.29 | 2 | 1 | 0 | 1 | 0 | 0 |
| ................................................................................................CAACTTCTCGTTATTAA......................................................................................................................................... | 17 | 2 | 20 | 0.25 | 5 | 5 | 0 | 0 | 0 | 0 |
| .................................................................................................AACTTCTCGTTATTAA......................................................................................................................................... | 16 | 1 | 12 | 0.25 | 3 | 3 | 0 | 0 | 0 | 0 |
| .............................................................................................GAGTAACTTCTGGTTATTAAC........................................................................................................................................ | 21 | 3 | 5 | 0.20 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................GAGCAACTTCTCGTTATTA.......................................................................................................................................... | 19 | 3 | 20 | 0.15 | 3 | 0 | 0 | 0 | 2 | 1 |
| ..................................................................................................ACTTCTCGTTATTAAT........................................................................................................................................ | 16 | 1 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................ACTTCTGGTTATTAA......................................................................................................................................... | 15 | 1 | 16 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 |
| .............................................................................................................................GGATAATTCTAGGCAG............................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
| .................................................................................................AACTTCTCGTTATTA.......................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:23 AM