ID:

dsi_355

 Coordinate:

2r:2575426-2575510 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -4.9 -4.9 -4.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGGACGGAGATGGCTAAGTCGACGTGTTCTTCCTTCCAATTGTTACATACTTTCAACGAACATAGTAAACTGATATAAAATGTCTGCGAACTCATACGAACCCTTTCAGACGAACTTTTTTCTTCTTTCAGAGTCAAATCACAAAAGTCCAAACATGGGTATTGAACAGAACAAGCAGGAACGTA
***********************************..(((((((.......(((..........(((....(((((...))))))))..........)))........))))).....))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 M023
head
 GSM343915
embryo
 SRR902009
testis
..................................................TTTCAACGAACATAGTAAACTGATA.............................................................................................................. 25 0 1 329.00 329 231 83 10 0 4 1 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGATATA............................................................................................................ 27 0 1 134.00 134 98 25 8 0 3 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCCTT................................................................................ 25 0 1 91.00 91 58 30 1 0 2 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCCTTTCAGA........................................................................... 30 0 1 54.00 54 28 25 1 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGGAACG.. 28 0 1 39.00 39 28 9 1 1 0 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCCTTT............................................................................... 26 0 1 34.00 34 22 10 2 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGGAACGT. 29 0 1 33.00 33 9 22 0 0 2 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGGAACGTA 30 0 1 29.00 29 10 19 0 0 0 0 0 0 0 0
....................................................................................TGCGAACTCATACGAACCCTTTCAGA........................................................................... 26 0 1 26.00 26 15 7 2 1 1 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGAACCCT................................................................................. 29 0 1 25.00 25 10 12 2 0 1 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATACGA...................................................................................... 26 0 1 24.00 24 11 9 2 1 0 0 1 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCCT................................................................................. 24 0 1 16.00 16 8 3 0 0 3 2 0 0 0 0
...................................................................................................................................................TCCAAAAATGGGTATTGAACAGAACAAGC......... 29 1 1 13.00 13 4 9 0 0 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGAACCCTT................................................................................ 30 0 1 12.00 12 4 8 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGA................................................................................................................ 23 0 1 12.00 12 5 6 0 0 1 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGGAAC... 27 0 1 12.00 12 5 6 0 1 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGGAA.... 26 0 1 10.00 10 6 4 0 0 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGAACCC.................................................................................. 28 0 1 9.00 9 6 2 1 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGAT............................................................................................................... 24 0 1 8.00 8 6 2 0 0 0 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTCCTTC..................................................................................................................................................... 26 0 1 8.00 8 6 1 1 0 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGA...................................................................................... 24 0 1 8.00 8 4 3 1 0 0 0 0 0 0 0
...............................................................................ATGTCTGCGAACTCATACGAACCCTT................................................................................ 26 0 1 7.00 7 4 3 0 0 0 0 0 0 0 0
.....................................................................................................................................................CAAAAATGGGTATTGAACAGAACAAGC......... 27 1 1 6.00 6 1 5 0 0 0 0 0 0 0 0
....................................................................................TGCGAACTCATACGAACCCTTTCAGACG......................................................................... 28 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0
....................................................................................TGCGAACTCATACGAACCCTTTCAGACGA........................................................................ 29 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGGA..... 25 0 1 6.00 6 5 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................CAAACATGGGTATTGAACAGAACAAGC......... 27 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0
...............................................................................ATGTCTGCGAACTCATACGAACCCT................................................................................. 25 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGATATAAAA......................................................................................................... 30 0 1 5.00 5 2 2 0 0 1 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTCCTT...................................................................................................................................................... 25 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACG....................................................................................... 23 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATACGAA..................................................................................... 27 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
..............................................................................AATGTCTGCGAACTCATACGAACCCTT................................................................................ 27 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0
....................................................................................TGCGAACTCATACGAACCCTTTCAG............................................................................ 25 0 1 4.00 4 2 0 1 0 1 0 0 0 0 0
.................................................TTTTCAACGAACATAGTAAACTGATA.............................................................................................................. 26 1 1 4.00 4 0 2 2 0 0 0 0 0 0 0
..........................................................................................................CAGACGAACTTTTTTCTTCTTTCAGAGT................................................... 28 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0
.............................................................................AAATGTCTGCGAACTCATACGAACCCT................................................................................. 27 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TCCAAACATGGGTATTGAACAGAACA............ 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCC.................................................................................. 23 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCCTTTC.............................................................................. 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGATAT............................................................................................................. 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTCC........................................................................................................................................................ 23 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0
....................................................................................TGCGAACTCATACGAACCCTTTCA............................................................................. 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..................................................................................TCTGCGAACTCATACGAACCCTTTCAGA........................................................................... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CATGGGTATTGAACAGAACAAGCAGGAA.... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGAA..................................................................................... 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TATTGAACAGAACAAGCAGGAACGTA 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CAAACATGGGTATTGAACAGAACAAGCA........ 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAGTCCAAAAATGGGTATTGAACAGA............... 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATGGGTATTGAACAGAACAAGCAGGAACG.. 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATGGGTATTGAACAGAACAAGCAGGAA.... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................ACTTTTTTCTTCTTTCAGAGTCAAA............................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTCAAATCACAAAAGTCCAAAAATGGG.......................... 27 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTCCTTCC.................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...........................................................................................TCATACGAACCCTTTCAGACGAACTT.................................................................... 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATACG....................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................AAATGTCTGCGAACTCATACGAACCCTT................................................................................ 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................AGTCCAAACATGGGTATTGAACAGAACA............ 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0
...................................................TTCAACGAACATAGTAAACTGATA.............................................................................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTCCT....................................................................................................................................................... 24 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0
..............................................................................AATGTCTGCGAACTCATACGAACCC.................................................................................. 25 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................AACATGGGTATTGAACAGAACAAGC......... 25 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACCCTTTCAG............................................................................ 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................CATGGGTATTGAACAGAACAAGCAGG...... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................AATGTCTGCGAACTCATACGAACCCT................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATA......................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATACGAACCCT................................................................................. 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TATTGAACAGAACAAGCAGGAACGTC 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TTTGCGAACTCATACGAACCCTT................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGATATAAA.......................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........GATGGCTAAGTCGACGTGTTC............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................TCAGAGTCAAATCACAAAAGTCCAAAAA.............................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...ACGGAGATGGCTAAGTCGACG................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTC......................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................TCGACGTGTTCTTCCTTCCAATTGT.............................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................TAATAATGTCTGCGAACTCATACGA...................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CATGGGTATTGAACAGAACAAGCA........ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGGAGG...... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................GCGAACTCATACGAACCC.................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................TTCTTCCTTCCAATTGTTACATA........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................TGTTACATCCTTTCAACGAACATAGTA...................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................CAGAGTCAAATCACAAAAGTCCAAACA.............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................TTTCGACGAACATAGTAAACTGATA.............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCAGAGTCAAATCACAAAAGTCCAAACA.............................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTTTCTTCTTTCAGA..................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............TAAGTCGACGTGTTCTTCCTTCCAATT................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................AAGTCCAAACATGGGTAT....................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGATAC............................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................ACATGGGTATTGAACAGAACAAGCAGG...... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................TAGACGTGTTCTTCCTTCCAATTGT.............................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................ATGGGTATTGAACAGAC.............. 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....GGAGATGGCTAAGTCGACGT................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................AATGTCTGCGAACTCATACGAACCCTTT............................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................TGTTCTTCCTTCCAATTGTTACATACA...................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................CTTCAACGAACATAGTAAACTGATA.............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAACATGGGTATTGAACAGAACAAGC......... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................ATGTCTGCGAACTCATACGAACCCTTTC.............................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................TGTAAAATGTCTGCGAACTCATACGA...................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................AACTCATACGAACCCTTTCAGACGAACTT.................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCCAAACATGGGTATTGAACAGAACA............ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AACATGGGTATTGAACAGAAC............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGC......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................ATAAAATGTCTGCGAACTCATACGAACCCT................................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATACGAACC................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGCAAACTGATATA............................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGAACC................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGGTTATTGAACAGAACAAGCAGGAA.... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....GGAGATGGCTAAGTCGACG................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TATTGAACAGAACAAGCAGGAACG.. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................GTCTGCGAACTCATACGAACCCTTT............................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................AAAAGTCCAAAAATGGGTATTGAACAGA............... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTCAGAGTCAAATCACAAAAGTCCAAAAA.............................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................CAGACGAACTTTTTTCTTCTTTCAGA..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TCAGACGAACTTTTTTCTTCTTTCAGAG.................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................AATGTCTGCGAACTCATACGA...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATGGGTATTGAACAGAAC............. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................CGAACTCATACGAACCCTTTCAGACG......................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AATGGGTATTGAACAGAACAAGCAGGAACG.. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................CGAACCCTTTCAGACGAACTTTTTTCT.............................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................ACGAACATAGTAAACTGATATA............................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AATGGGTATTGAACAGAACAAGCAGGAA.... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................TCTTCCTTCCAATTGTTACATAC....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TCTGCGAACTCATACGAACCCTTT............................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................CGACGTGTTCTTCCTTCCAATTGTTAA........................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................AGCGAACTCATACGAACCCTTTCAGA........................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................TACGAACCCTTTCAGACGAACTTTT.................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................AAAGTCCAAAAATGGGTATTGAACAGAA.............. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATAC........................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................TAAAATGTCAGCGAACTCATACGAACCCT................................................................................. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTG................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TTTCAGACGAACTTTTTTCTTCTTTCAGA..................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................TGATATAAAATGTCTGCGAACTCATA......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........GATGGCTAAGTCGACG................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................TTTCAACGAACATAGGAAACTGATATA............................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................AAATGGGTATTGAACAGAACAAGCAGGAA.... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAGTCCAAAAATGGGTATTGAACAG................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................TGCGAACTCATACGAACCCTTTCAGAC.......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCAGG...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................GACGTGTTCTTCCTTCCAATTGTTACA.......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TAGTAAACTGATATAAAATGT...................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................ACGAACCCTTTCAGACGAACTTTTTTCTT............................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................TAGAATGTCTGCGAACTCATACGAACCCTT................................................................................ 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................TCAACGAACATAGTAAACTGTTA.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TCAGACGAACTTTTTTCTTCTTTCCGA..................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGGATTGAACAGAACAAGCAGGAACGTA 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACAGATA.............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................TTTCAACGAGCATAGTAAACTGATA.............................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................ATCACAAAAGTCCAAAAATGGGTATTGA.................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAGTCCAAAAATGGGTATTGAACAGAAC............. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TCCAAACATGGGTATTGAACAGAACAAGC......... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........ATGGCTAAGTCGACGTGTTCTTCCTTC..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................CGACGTGTTCTTCCTTCCAATTGTA............................................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................TAAAATGTCTGCGAACTCATACGC...................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TCATACGAACCCTTTCAGACGAACT..................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TCAGACGAACTTTTTTCTTCTTTCAGAGT................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........TGGCTAAGTCGACGTGTTCTTCCTTTC.................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................TGTTCTTCCTTCCAATTGTTACATA........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TCAGACGAACTTTTTTCTTCTTTCAGA..................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................TTCAGACGAACTTTTTTCTTCTTTCAGA..................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................TATAAAATGTCTGCGAACTCATACGT...................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................ATTAAACGAACATAGTAAACTGATA.............................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TATTGAACAGAACAAGCAGGAACGT. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................TCAACGAACATAGTAAACTGAT............................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCTTCTTTCAGAGTCAAATCACAAAA....................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTCAACGACCATAGTAAACTGA................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................CAGAGTCAAATCACAAAAGTCCAAAAA.............................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGTAAACTGATG.............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGGGTATTGAACAGAACAAGCACGAACGT. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............GCTAAGTCGACGTGTTCTTCC........................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................AACATGGGTATTGAACAGAACAAGCAGG...... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................AAAGTCCAAACATGGGTATTGAACAGA............... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ACATGGGTATTGAACAGAACAAGC......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................TGTCTGCGAACTCATACGAACTCTT................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.GGACGGAGAAGGCTATGT...................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................CAGCGGACTCATACAAACCCT................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................TTTCAACGAACATAGT....................................................................................................................... 16 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.GGACGGAGAAGGTTAAGT...................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1
.GGACGGAGAAGGCTATGTTG.................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................GTCAAGTCACGAAAGTC.................................... 17 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.GGACGGAGAAGGCTA......................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
GGGACGGAGAAGGCTAGGT...................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
...ACGGAGAAGGCTAAG....................................................................................................................................................................... 15 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0
..GACGGAGAAGGCTAGGT...................................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
...ACGGAGAAGGCTAGGT...................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................CAAAGAACATAGTCAACT.................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GCCTGCCTCTACCGATTCAGCTGCACAAGAAGGAAGGTTAACAATGTATGAAAGTTGCTTGTATCATTTGACTATATTTTACAGACGCTTGAGTATGCTTGGGAAAGTCTGCTTGAAAAAAGAAGAAAGTCTCAGTTTAGTGTTTTCAGGTTTGTACCCATAACTTGTCTTGTTCGTCCTTGCAT
*****************************************************************..(((((((.......(((..........(((....(((((...))))))))..........)))........))))).....))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M024
male body		 SRR902008
ovaries
....................CTGCACAAGAAGGAAGGTTAACAATGTAT........................................................................................................................................ 29 0 1 29.00 29 15 11 0 3 0 0 0 0
...........................AGAAGGAAGGTTAACAATGTATGAAAA................................................................................................................................... 27 1 1 9.00 9 5 4 0 0 0 0 0 0
.....................TGCACAAGAAGGAAGGTTAACAATGTAT........................................................................................................................................ 28 0 1 6.00 6 5 1 0 0 0 0 0 0
.........................CAAGAAGGAAGGTTAACAATGTAT........................................................................................................................................ 24 0 1 5.00 5 0 2 2 1 0 0 0 0
........................ACAAGAAGGAAGGTTAACAATGTAT........................................................................................................................................ 25 0 1 5.00 5 3 1 0 0 0 1 0 0
........................................................................................TTGAGTATGCTTGGGAAAGTCTGCT........................................................................ 25 0 1 3.00 3 0 0 3 0 0 0 0 0
............CGATTCAGCTGCACAAGAAGGAAGGT................................................................................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0 0 0
..............................AGGAAGGTTAACAATGTATGAAAA................................................................................................................................... 24 1 2 2.50 5 0 4 0 0 1 0 0 0
.......................CACAAGAAGGAAGGTTAACAATGTAT........................................................................................................................................ 26 0 1 2.00 2 1 0 0 0 1 0 0 0
........CTACCGATTCAGCTGCACAAGAAGGA....................................................................................................................................................... 26 0 1 2.00 2 1 0 0 0 0 1 0 0
...............................................................................................................................................................ATAACTTGTCTTGTTCGTCCTT.... 22 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................AGAAGGAAGGTTAACAATGTA......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........ACCGATTCAGCTGCACAAGAAGGAAGGT................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................TTGAAAAAAGAAGAAAGTCTCAGTTT............................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
.............GATTCAGCTGCACAAGAAGGAAGGTT.................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................TGAAAAAAGAAGAAAGTCTCAGTTTAGT............................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0
...............TTCAGCTGCACAAGAAGGAAGGTT.................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
....................CTGCACAAGAAGGAAGGTTAACAATGTATG....................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................AAGGAAGGTTAACAATGTATTAAA.................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................AAAGAAGAAAGTCTCAGTTTAGTGTT......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
....................CTGCACAAGAAGGAAGGTTAACAATGT.......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................GCACAAGAAGGAAGGTTAACAATGTAT........................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
....GCCTCTACCGATTCAGCTGCACAAGAA.......................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................TCAGTTTAGTGTTTTCAGGTT................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................TCAGCTGCACAAGAAGGAAGGTTAACA.............................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................AGAAAGTCCCAGGTTAGTGT.......................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
........CTACCGATTCAGCTGCAC............................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..............ATTCAGCTGCACAAGAAGGAAGGT................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................ACAAGAAGGAAGGTTAACAATGTATGAAAA................................................................................................................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0
....GCCTCTACCGATTCAGCTGCACAAG............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................ATGCTTGGGAAAGTCTGCTTGAAAAA................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................AAGAAGGAAGGTTAACAATGTATGAAAA................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................CAGGTTGGTACCCGTACCTTG.................. 21 3 1 1.00 1 0 0 0 0 0 0 1 0
.............................AAGGAAGGTTAACAATGTATGAAAA................................................................................................................................... 25 1 2 1.00 2 1 1 0 0 0 0 0 0
.........................CAAGAAGGAAGGTTAACAATGTATGAAAA................................................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................TTGAAAAAAGAAGAAAGTCTCAGTTTAGTGT.......................................... 31 0 1 1.00 1 0 1 0 0 0 0 0 0
....................CTGCACAAGAAGGAAGGTTAACAAT............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................AGAAGGAAGTTTAACAATGTATGAAAA................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................AAAAGAAGAAAGTCTCAGTTTAGTGT.......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................GCACAAGAAGGAAGGT................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0
....................CTGCACAAGAATGAAGGTTAACAATGTAT........................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................AAGAAGAAAGTCTCAGTTTAGTGT.......................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................TTGCTTGTATCATTTGACTAT.............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................GGAAGGTTAACAATGTATGAAAA................................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0
...........CCGATTCAGTTGCAACAGAAG......................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0
.............................................................................................................................AAAGTCTGAGTTTAGTTTT......................................... 19 2 12 0.08 1 0 0 0 1 0 0 0 0
.............................................GTAAGAAAGTTGCTT............................................................................................................................. 15 1 18 0.06 1 0 0 1 0 0 0 0 0
...............................................................................................TGCTTGCTAAAGTCTG.......................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0
.........................CAAAAAGGAAGGTTA................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................ATACTATACAGACGCTT............................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2575376-2575560 - dsi_355 CGGACGGA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTCCAATTGTTACATACTT-T--------CAACGAACATA-----GTAAACTGA----------------------------TATAAA------------------------------------ATGT--CTGCGAACTCATACGAACCCTTTCAGACGAACTTTTTT-CTTC----TTTCAGA----------GTCAAATCACAA----A-AGTCCAAACATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTA
droSec2 scaffold_26:250100-250284 + CGGACGGA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTCCAACTGTTACATACTT-T-------TCAACGAACATA-----GTAAACTGA----------------------------TATAAA------------------------------------ATAT--CTACGGACTCATACGAACCCTTTCAGACGAATCTTTTT-CTTC----TTTCAGA----------GTCAAATCACAA----A--ATCCCAACATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTA
dm3 chr2R:1625043-1625257 - CGGACGGA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCCTCCTTCCAACCGTTACATACTT-T-------TCAACGAATATACAATAGTAAACTGA----------------------------TATAAATATGTTCCAAC--------------TTAAGGTCTAAGTGT--CAGCGGACTCATACAAACCCTTTCAGACGAATTTTTTTTCTTC----TTTCAGA----------GTCAAGTCAAAA----AAAATCCAAACATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTA
droEre2 scaffold_4929:20736209-20736450 + CATAGGGA--------CATGGCCATATCGACTGGG-TAGTGATCCTGA---------TGT----TTACTTTATAGAGTCGCAAGCGCTACCTTCTAGTTGTTACATACTAGTCTTCTTCTATACTAATCTA-----GTATACCGA--------------------CCAACAGACC--G------------CATTTCTGCTTATT--------------------CTGACTCATACAAACCCTTTCAGACGGACTGGTTT-CTTC----TTTCAGG----------GTCAAATCAAAG----A-AGTCCTGGCATAGGAATTGAAT---------------AGA------ACAGGCAC--------AAACGCA
droYak3 v2_chr2h_random_005:377702-377880 - CGGACGGA--------CATGACCAGATCGACTCGCCTGTTTATCCTGATCAAGAATATAT----ATACTTTATATTGTCGGAAACGCTTCCTTCTGCCTGATACATACTT-T-------CCAACGAAG----------GTACCC-TTTTA-CTC--T----TCGAGTAACAGGTA---------------CAATA--A-----------------------------------------------------------------------------------------------------------ATCAAATGTATAAAGTATGG---------------AAA------ACAA--GG--------AAATATA
droEug1 scf7180000408984:364220-364395 - CTAGTCCG--------TATAGTTTAGTA-------------------------------------------------------------------------------------------------TACCTA-----GTATACCA-TTTCA-CTC--T----ATGAGTAACGGGTA---------------TAAAA--ATAAAC-TGAAAATCAATGTAT--TCTTGATCGCCTATCCGCCCGTCCAGGCGTTTGGTTTG-------------ACA----------TTTTTATCAATA----------CCTATAGATTTACCAAACAAAATT-----------A------TTGGGCAG--------TGACGTC
droBia1 scf7180000302132:100149-100349 - TGATCG---------------------------------------------GGAATATAT----ATACTTTATGAAGTCAAAAACGCTTCCTTCCACCTGTTACATACTT-T-------CTGGCGAATCTA-----GTATACCCATTTTA-CTC--T----ACGAGTAACGGGTATAAACACCTCTTAAC----------------GAGGTATG-GGGTCGTT--------G--------------------------C-GATT----GTGCACA----------ATCAACGTACAA----A-AGTTCTGATATCGACTTTT---------GTGACGAATAGA------G----------------CTTGTA
droTak1 scf7180000415185:320072-320239 - CAGACGGACAGACTGACATGGCTATATCGACTCTG--------------------------------------------------------------CTGTTACATACTT-T-------TGAACGAATACT-----ATACACCA-TTTTA-CTG--T-----TAAGTAACGGGTA---------------TAAAA--AC----------------------------------------TCTCA-TAACAAACGTTTTT-TATA----TACCAAA----------ATAAA------C----A-A-------------CTTTC---------GTCACAAATG-AGTTCCAACTT-------------TGGATA
droEle1 scf7180000491238:1104400-1104569 + CAAACTGA--------CTTGATTA---------------------------AGAATACGTACATATACTTTAAAGGGTCGAAAACCCTTTTATATATCTGTTACATACTT-T-------TCAACGAACACA-----CTATTTCC-TTTTA-CTC--T----TCGAGGGG---CTA---------------TAATT--AAAAGTC--------------------ATGAAATGTTATAACTCTTTTGCAAGAACTTTTTG-ATTT----TTT-----------------------------------------------------------------------------------------------------
droRho1 scf7180000776951:5705-5951 + CGGA------------CATGGCTATATCGACTCGGCTAGTGAACCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTT-T-------TGCACGAATACA-----ATATACCC-TTTTA-CTC--T----ACGACTAACGGGTA---------------TAATT--AAGAG------------------------------------CTGGTTTTGATAAATACTTT--CCCATTGATTTCACT----------GTCAAGTCAAAAGTCAAAAATTCAGAAG--AGTA--------AATTGT-------CGC------AATACAATAAAGAGGCCAGCATA
droFic1 scf7180000449556:2951-2958 + CAGACGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302248:227688-227792 + TGTT--------------------------------------------------------------------------------------------------TCAAACAT-G-------CAACCAACAAAA-----GCAAAGTGA----------------------------AATAAA------------------------------------AAGTAATT--------A----------TAAAAACGAAACTCTGG-TTTC----TTTTTAA----------GCCGAAGCACTT----T-----------------------------------------------ATTTGCAG--------AGACACA
droAna3 scaffold_13335:2636268-2636338 - CAGACGGA--------AATTCTTACATCGACGCC-----------------------------------------------AGTTGTCTCCTTCACTGCTTTGCACACTT-T-------TGACTAAAA-TT-----ATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396426:120893-120974 + TTAT-GGTCA------GATACTTA--------------------------------------------------TGGTCAGAGATGCTTTCTTTTCTTTGTTACATACAT-T-------CAAACGAATAAA-----AAATGCAA-TTCTA-CGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_36:10167-10319 + CAGACAGA--------CATGGCTCAATC-----------------------------TAA----ATACTTTATGGGGTT-----------GTTCTGGACGTTACACACAC-TCACTTTTACCACAAATCTA-----ATATACCT-CAATA-CTCATT----TTGAGTATCGGGTA---------------TACAA--ACGGA----------------------------------------------GCAATTTTTTT-CTTGTAAATTTTGGA----------GTCAG---------------------------------------------------------------------------------A
droPer2 scaffold_3285:1795-1965 + CAGACAGA--------CATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATACATATAATTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACAT-CCACTTTTACCACAAATCTA-----ATATACCC-CAATA-CTCATT----TTGAGTATCGGGTA---------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGGG--------GAACGT-
droWil2 scf2_1100000004963:179127-179319 - CGGACGGA--------CATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATAT----ATACTTTGTGGGGTCGCAGATGCTTCCTTCTGCCTGTTACATACAT-T-------TTGGCGACTTTA-----ATATACCA-TTTCA-CCC--T----ATGGGTGTATGGTA---------------TAAAA--AGCGA--------------------------ATCAT-CAAGCCATTTCTGA----T---TTT-TTTT----TTTCGAA----------GACTGAT--------------------------------------------------------------------------------
droVir3 scaffold_12855:9263940-9264153 + CAGACGGA--------CATGGCTAGAGCAACTCGGCTATTGGTGCTAATCAAGAATATAT----ATACTTTACGGGGTCGGAGATGTTTCCTTCTGCCTGTTACATACAT-TTGCATTTTGCACAAATACA-----ATATACCC-TTATA-CCCACTCTTTATAGGTTCAGGGTA---------------TAAAA--AGCACA-AGA-----------------------------ATG---------CAAA------------------------------------------------------CCGGGTAAATGTATTCAACGT--------------AA------ATAGCGAA--------GAGCACA
droMoj3 scaffold_1671:4770-5019 + CAGACGGA--------CAGGGCCAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATAT----ATACTTTG---TGTCTGCCACGCCTCCTTCTGCCTGTTACATACAT-T-------TCAACAAAACCA-----TTATACCC-TGATTTCCCATTGAAAATGGGTTCTGGGTA---------------TAA---------------------------------------TAAAACTACTTCCAGAAAAATGTTCTTTCTTC----ATGCACGAAGAGACATTTCTAGGTCATAA----G-TGTACTGATAATGGTATTTTAC---------------CAG------ATGACAAA--------AAATAT-
droGri2 scaffold_359:385-466 + CGATCA---------------------------------------------AAAATACAT----AAACAGTACA--------TACTCTTGCATAACCTTATTACACAATT-T-------ATTA-------------------------------------------------------------------------------------------------------------------------------AATATTTT-----------------------------------------------------------GAT------------------------------TATAT-A--------AAAAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGACGGA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTCCAATTGTTACATACTT-T--------CAACGAACATA-----GTAAACTGA----------------------------TATAAA------------------------------------ATGT--CTGCGAACTCATACGAACCCTTTCAGACGAACTTTTTT-CTTC----TTTCAGA----------GTCAAATCACAA----A-AGTCCAAACATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TA.....................................................................................................................................................................................................251329.00329001000834231100000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TATA...................................................................................................................................................................................................271134.001340000002539880000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCCTT.................................................................................................................................25191.00910000003025810000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCCTTTCAGA............................................................................................................................30154.00540000002502810000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACG..28139.0039000000902811000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCCTTT................................................................................................................................26134.00340000001002220000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGT.29133.0033000000222900000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTA30129.00290000001901000000000
..............................................................................................................................................................................................................................TGCGAACTCATACGAACCCTTTCAGA............................................................................................................................26126.0026000000711521000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGAACCCT..................................................................................................................................29125.00250000001211020000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATACGA.......................................................................................................................................26124.0024000100901121000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCCT..................................................................................................................................24116.001600200033800000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGAACCCTT.................................................................................................................................30112.001200000080400000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------.......................................................................................................................................................................................................23112.001200000061500000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GAAC...27112.001200000060501000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GAA....26110.001000000040600000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGAACCC...................................................................................................................................2819.00900000020610000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------T......................................................................................................................................................................................................2418.00800000020600000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTC......................................................................................................................................................................................................................................................................................2618.00800000010610000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGA.......................................................................................................................................2418.00800000030410000000
.......................................................................................................................................................................................................................ATGT--CTGCGAACTCATACGAACCCTT.................................................................................................................................2617.00700000030400000000
..............................................................................................................................................................................................................................TGCGAACTCATACGAACCCTTTCAGACG..........................................................................................................................2816.00600000020400000000
..............................................................................................................................................................................................................................TGCGAACTCATACGAACCCTTTCAGACGA.........................................................................................................................2916.00600000020400000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GA.....2516.00600000001500000000
...................................................................................................................................................................................................................................................................................................................CAAACATGGGTATTGAAC---------------AGA------ACAAGC.................2715.00500000040100000000
.......................................................................................................................................................................................................................ATGT--CTGCGAACTCATACGAACCCT..................................................................................................................................2515.00500000000500000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TATAAA------------------------------------A............................................................................................................................................................3015.00500000021200000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTT.......................................................................................................................................................................................................................................................................................2515.00500000000410000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACG........................................................................................................................................2315.00500000010400000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATACGAA......................................................................................................................................2714.00400000030100000000
..................................................................................................................................................................................A------------------------------------ATGT--CTGCGAACTCATACGAACCCTT.................................................................................................................................2714.00400000040000000000
..............................................................................................................................................................................................................................TGCGAACTCATACGAACCCTTTCAG.............................................................................................................................2514.00400000001210000000
....................................................................................................................................................................................................................................................CAGACGAACTTTTTT-CTTC----TTTCAGA----------GT.....................................................................................2814.00400000010210000000
.................................................................................................................................................................................AA------------------------------------ATGT--CTGCGAACTCATACGAACCCT..................................................................................................................................2714.00400000010300000000
.................................................................................................................................................................................................................................................................................................................TCCAAACATGGGTATTGAAC---------------AGA------ACA....................2613.00300000020100000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCC...................................................................................................................................2313.00300000020100000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCCTTTC...............................................................................................................................2713.00300000000300000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TAT....................................................................................................................................................................................................2613.00300000010200000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCTTCC.........................................................................................................................................................................................................................................................................................2313.00300000000201000000
..............................................................................................................................................................................................................................TGCGAACTCATACGAACCCTTTCA..............................................................................................................................2413.00300000010200000000
..........................................................................................................................................................................................................................T--CTGCGAACTCATACGAACCCTTTCAGA............................................................................................................................2813.00300000000300000000
.......................................................................................................................................................................................................................................................................................................................CATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAA....2813.00300000000300000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGAA......................................................................................................................................2513.00300000000210000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAACGTA2613.00300000000300000000
...................................................................................................................................................................................................................................................................................................................CAAACATGGGTATTGAAC---------------AGA------ACAAGCA................2812.00200000020000000000
........................................................................................................................................................................................................................................................................................................................ATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACG..2912.00200000010100000000
........................................................................................................................................................................................................................................................................................................................ATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAA....2712.00200000000200000000
...........................................................................................................................................................................................................................................................ACTTTTTT-CTTC----TTTCAGA----------GTCAAA.................................................................................2512.00200000000200000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTCC.....................................................................................................................................................................................................................................................................................2712.00200000010100000000
.....................................................................................................................................................................................................................................TCATACGAACCCTTTCAGACGAACTT.....................................................................................................................2612.00200000010001000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATACG........................................................................................................................................2512.00200000000200000000
.................................................................................................................................................................................AA------------------------------------ATGT--CTGCGAACTCATACGAACCCTT.................................................................................................................................2812.00200000010100000000
...............................................................................................................................................................................................................................................................................................................AGTCCAAACATGGGTATTGAAC---------------AGA------ACA....................2812.00200000000101000000
.............................................................................................................T-T--------CAACGAACATA-----GTAAACTGA----------------------------TA.....................................................................................................................................................................................................2412.00200000010100000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCT........................................................................................................................................................................................................................................................................................2412.00200100010000000000
..................................................................................................................................................................................A------------------------------------ATGT--CTGCGAACTCATACGAACCC...................................................................................................................................2512.00210000010000000000
.....................................................................................................................................................................................................................................................................................................................AACATGGGTATTGAAC---------------AGA------ACAAGC.................2512.00200000011000000000
........................................................................................................................................................................................................................TGT--CTGCGAACTCATACGAACCCTTTCAG.............................................................................................................................2912.00200000010100000000
.......................................................................................................................................................................................................................................................................................................................CATGGGTATTGAAC---------------AGA------ACAAGCAG--------G......2612.00200000000200000000
..................................................................................................................................................................................A------------------------------------ATGT--CTGCGAACTCATACGAACCCT..................................................................................................................................2612.00200000010100000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATA..........................................................................................................................................2312.00200000020000000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATACGAACCCT..................................................................................................................................3111.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAACGTC2611.00100000000100000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TATAAA------------------------------------.............................................................................................................................................................2911.00100000000100000000
................GATGGCTAAGTCGACGT--------------------------------------------------GTTC.............................................................................................................................................................................................................................................................................................2111.00100000000001000000
...ACGGA--------GATGGCTAAGTCGACG....................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCTTC..........................................................................................................................................................................................................................................................................................2211.00100000000001000000
..........................TCGACGT--------------------------------------------------GTTCTTCCTTCCAATTGT...............................................................................................................................................................................................................................................................................2511.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................CATGGGTATTGAAC---------------AGA------ACAAGCA................2411.00100000000010000000
...............................................................................................................................................................................................................................GCGAACTCATACGAACCC...................................................................................................................................1811.00100000000100000000
....................................................................................TTCTTCCTTCCAATTGTTACATA.........................................................................................................................................................................................................................................................................2311.00100000000100000000
...............................................................................................................................................................................................................................................................................CAGA----------GTCAAATCACAA----A-AGTCCAAACA...........................................................2711.00100000000100000000
..............................................................................................................................................................................................................................................................................TCAGA----------GTCAAATCACAA----A-AGTCCAAACA...........................................................2811.00100000000100000000
.............................................................................................................................................................................................................................................................TTTTTT-CTTC----TTTCAGA----------.......................................................................................1711.00100000000100000000
......................TAAGTCGACGT--------------------------------------------------GTTCTTCCTTCCAATT.................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................................................................................................A-AGTCCAAACATGGGTAT....................................................1811.00100000000001000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TAC....................................................................................................................................................................................................2611.00100000010000000000
......................................................................................................................................................................................................................................................................................................................ACATGGGTATTGAAC---------------AGA------ACAAGCAG--------G......2711.00100000000100000000
........................................................................................................................................................................................................................................................................................................................ATGGGTATTGAAC---------------AGA------C......................1711.00100000000001000000
.....GGA--------GATGGCTAAGTCGACGT--------------------------------------------------.................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..................................................................................................................................................................................A------------------------------------ATGT--CTGCGAACTCATACGAACCCTTT................................................................................................................................2811.00100000010000000000
................................T--------------------------------------------------GTTCTTCCTTCCAATTGTTACATACA.......................................................................................................................................................................................................................................................................2711.00100000000100000000
....................................................................................................................................................................................................................................................................................................................AAACATGGGTATTGAAC---------------AGA------ACAAGC.................2611.00100000010000000000
.......................................................................................................................................................................................................................ATGT--CTGCGAACTCATACGAACCCTTTC...............................................................................................................................2811.00100000010000000000
..................................................................................................................................................................................................................................AACTCATACGAACCCTTTCAGACGAACTT.....................................................................................................................2911.00100000000100000000
................................................................................................................................................................................................................................................................................................................GTCCAAACATGGGTATTGAAC---------------AGA------ACA....................2711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................AACATGGGTATTGAAC---------------AGA------AC.....................2111.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGC.................2111.00100000000100000000
..............................................................................................................................................................................ATAAA------------------------------------ATGT--CTGCGAACTCATACGAACCCT..................................................................................................................................3011.00100000000100000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATACGAACC....................................................................................................................................2911.00100000010000000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGAACC....................................................................................................................................2711.00100000000100000000
.....GGA--------GATGGCTAAGTCGACG....................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAACG..2411.00100000010000000000
.........................................................................................................................................................................................................................GT--CTGCGAACTCATACGAACCCTTT................................................................................................................................2511.00100000010000000000
....................................................................................................................................................................................................................................................CAGACGAACTTTTTT-CTTC----TTTCAGA----------.......................................................................................2611.00100000000100000000
...................................................................................................................................................................................................................................................TCAGACGAACTTTTTT-CTTC----TTTCAGA----------G......................................................................................2811.00100000010000000000
..................................................................................................................................................................................A------------------------------------ATGT--CTGCGAACTCATACGA.......................................................................................................................................2111.00100000000100000000
........................................................................................................................................................................................................................................................................................................................ATGGGTATTGAAC---------------AGA------AC.....................1811.00100000000001000000
................................................................................................................................................................................................................................CGAACTCATACGAACCCTTTCAGACG..........................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................CGAACCCTTTCAGACGAACTTTTTT-CT..............................................................................................................2711.00100000010000000000
..........................................................................................................................ACGAACATA-----GTAAACTGA----------------------------TATA...................................................................................................................................................................................................2211.00100000010000000000
.....................................................................................TCTTCCTTCCAATTGTTACATAC........................................................................................................................................................................................................................................................................2311.00100000000100000000
..........................................................................................................................................................................................................................T--CTGCGAACTCATACGAACCCTTT................................................................................................................................2411.00100000000010000000
...........................CGACGT--------------------------------------------------GTTCTTCCTTCCAATTGTTAA............................................................................................................................................................................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................................TACGAACCCTTTCAGACGAACTTTT...................................................................................................................2511.00100000000001000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATAC.........................................................................................................................................2411.00100000010000000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTG....................................................................................................................................................................................................................................2211.00100000000100000000
.................................................................................................................................................................................................................................................TTTCAGACGAACTTTTTT-CTTC----TTTCAGA----------.......................................................................................2911.00100000000100000000
..............................................................................................................................................TGA----------------------------TATAAA------------------------------------ATGT--CTGCGAACTCATA..........................................................................................................................................2611.00100000000100000000
................GATGGCTAAGTCGACG....................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..............................................................................................................................................................................................................................TGCGAACTCATACGAACCCTTTCAGAC...........................................................................................................................2711.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------G......2411.00100000000100000000
............................GACGT--------------------------------------------------GTTCTTCCTTCCAATTGTTACA...........................................................................................................................................................................................................................................................................2711.00100000000100000000
.................................................................................................................................TA-----GTAAACTGA----------------------------TATAAA------------------------------------ATGT--.......................................................................................................................................................2111.00100000000001000000
.........................................................................................................................................................................................................................................ACGAACCCTTTCAGACGAACTTTTTT-CTT.............................................................................................................2911.00100000010000000000
.................................................................................................................................................................................................................................................................................................................TCCAAACATGGGTATTGAAC---------------AGA------ACAAGC.................2911.00100000010000000000
.................ATGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTC......................................................................................................................................................................................................................................................................................2711.00100000000100000000
...........................CGACGT--------------------------------------------------GTTCTTCCTTCCAATTGTA..............................................................................................................................................................................................................................................................................2511.00100000000001000000
...............................................................................................................................................................................TAAA------------------------------------ATGT--CTGCGAACTCATACGC.......................................................................................................................................2411.00100000000100000000
.....................................................................................................................................................................................................................................TCATACGAACCCTTTCAGACGAACT......................................................................................................................2511.00100000000100000000
...................................................................................................................................................................................................................................................TCAGACGAACTTTTTT-CTTC----TTTCAGA----------GT.....................................................................................2911.00100000010000000000
................................T--------------------------------------------------GTTCTTCCTTCCAATTGTTACATA.........................................................................................................................................................................................................................................................................2511.00100000000100000000
...................................................................................................................................................................................................................................................TCAGACGAACTTTTTT-CTTC----TTTCAGA----------.......................................................................................2711.00100000010000000000
..................................................................................................................................................................................................................................................TTCAGACGAACTTTTTT-CTTC----TTTCAGA----------.......................................................................................2811.00100000000100000000
.............................................................................................................................................................................TATAAA------------------------------------ATGT--CTGCGAACTCATACGT.......................................................................................................................................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAACGT.2511.00100000010000000000
...............................................................................................................T--------CAACGAACATA-----GTAAACTGA----------------------------T......................................................................................................................................................................................................2211.00100000000100000000
..................................................................................................................................................................................................................................................................T-CTTC----TTTCAGA----------GTCAAATCACAA----A-A....................................................................2611.00100000010000000000
............................................................................................................TT-T--------CAACGAACATA-----GTAAACTGA----------------------------TG.....................................................................................................................................................................................................2511.00100000000100000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCTTCC.........................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................AACATGGGTATTGAAC---------------AGA------ACAAGCAG--------G......2811.00100000000100000000
........................................................................................................................................................................................................................................................................................................A----A-AGTCCAAACATGGGTATTGAAC---------------AGA------.......................2711.00100000000010000000
......................................................................................................................................................................................................................................................................................................................ACATGGGTATTGAAC---------------AGA------ACAAGC.................2411.00100000010000000000
............................................................................................................TT-T--------CAACGAACATA-----GT..........................................................................................................................................................................................................................................1630.33100000000010000000
droSec2
CGGACGGA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCTTCCTTCCAACTGTTACATACTT-T-------TCAACGAACATA-----GTAAACTGA----------------------------TATAAA------------------------------------ATAT--CTACGGACTCATACGAACCCTTTCAGACGAATCTTTTT-CTTC----TTTCAGA----------GTCAAATCACAA----A--ATCCCAACATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................GTCGACGT--------------------------------------------------GTTCTTCCTTCCAACTGT...............................................................................................................................................................................................................................................................................2620.5011000
dm3
CGGACGGA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCCTCCTTCCAACCGTTACATACTT-T-------TCAACGAATATACAATAGTAAACTGA----------------------------TATAAATATGTTCCAAC--------------TTAAGGTCTAAGTGT--CAGCGGACTCATACAAACCCTTTCAGACGAATTTTTTTTCTTC----TTTCAGA----------GTCAAGTCAAAA----AAAATCCAAACATGGGTATTGAAC---------------AGA------ACAAGCAG--------GAACGTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................CTAAGTCGACGT--------------------------------------------------GTTCCTCCT........................................................................................................................................................................................................................................................................................21139.003900000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000091247600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAAC---------------AGA------ACAAGCAG--------GAACGT.21135.003500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000105130000000000000000000000000000100000000000010000100000000000000000000010000000020000000000000100000000000000000000000000000
.....................CTAAGTCGACGT--------------------------------------------------GTTCCTCC.........................................................................................................................................................................................................................................................................................20132.003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071128400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AAGGTCTAAGTGT--CAGCGGAC...............................................................................................................................................21132.003200000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000900000000000000000000000000000000000000000021000000200000000000010000200000000000100000000000000000000000000000000100100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTGAAC---------------AGA------ACAAGCAG--------GAAC...21128.002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000001157000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CATGGGTATTGAAC---------------AGA------ACAAGCAG--------G......26125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006620901000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................GATGGCTAAGTCGACGT--------------------------------------------------GTTCCTCC.........................................................................................................................................................................................................................................................................................25119.001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTCTTC----TTTCAGA----------GTCAAGTC...............................................................................21119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100002000000000000078000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCCTCCT........................................................................................................................................................................................................................................................................................22117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005206400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATGGCTAAGTCGACGT--------------------------------------------------GTTC.............................................................................................................................................................................................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070300000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................TAAGGTCTAAGTGT--CAGCGGA................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000030010000000000000000000000000000000000000000024100000010000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000
............................................................................................................................................................................................................TTAAGGTCTAAGTGT--CAGCGG.................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000065000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
................GATGGCTAAGTCGACGT--------------------------------------------------GTTCCTCCT........................................................................................................................................................................................................................................................................................26115.00150000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000002110300000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000100000000
.................ATGGCTAAGTCGACGT--------------------------------------------------GTTCT............................................................................................................................................................................................................................................................................................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000500000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000
.................................................................................................................................................................................AATATGTTCCAAC--------------TTAAGGTC................................................................................................................................................................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000
....................................................................................................................................................................................................................TAAGTGT--CAGCGGACTCATACAAACCC...................................................................................................................................27112.00120000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000010000000000200000000200000000020000100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAAGTGT--CAGCGGACTCATACAAACC....................................................................................................................................26112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000320003000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................CTAAGTCGACGT--------------------------------------------------GTTCCTC..........................................................................................................................................................................................................................................................................................19111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000214400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GTAAACTGA----------------------------TATAAATATGT............................................................................................................................................................................................20111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................T-T-------TCAACGAATATACAATAGT..........................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000045100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................AACCGTTACATACTT-T-------TCAAC........................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TCATACAAACCCTTTCAGACG..........................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000100000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AGGTCTAAGTGT--CAGCGGACT..............................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000030000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000
.........................................................................................................................AACGAATATACAATAGTAAAC......................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000044000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATGGCTAAGTCGACGT--------------------------------------------------GTTCCTC..........................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000200000000000000000001000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------GAAC...2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCCTCC.........................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TATAAATATGTTCCAAC--------------TTAAGGTC................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040100000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................TTTTTTTCTTC----TTTCAGA----------GTC....................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000042000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................T-T-------TCAACGAATATACAATAGTAAACT.....................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTTTTTTTCTTC----TTTCAGA----------GT.....................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAAGTGT--CAGCGGACTCATACAAACCCT..................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACATGGGTATTGAAC---------------AGA------ACAAGCAG--------G......2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100100000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CATGGGTATTGAAC---------------AGA------ACAAGC.................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CTAAGTCGACGT--------------------------------------------------GTTCCT...........................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TTTCTTC----TTTCAGA----------GTCAAGT................................................................................2115.0050000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................CTCATACAAACCCTTTCAGACGAATT......................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AACATGGGTATTGAAC---------------AGA------ACAAGC.................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TATGTTCCAAC--------------TTAAGGTCTAAGTGT--C......................................................................................................................................................2714.0040000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................................................................................CCAAC--------------TTAAGGTCTAAGTGT--C......................................................................................................................................................2114.0040000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTTTTTTTCTTC----TTTCAGA----------GTCAAGT................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCTTC----TTTCAGA----------GTCAAGTCA..............................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACATGGGTATTGAAC---------------AGA------ACAAGC.................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCC............................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TACAAACCCTTTCAGACGAAT.......................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................CTAAGTGT--CAGCGGACTCATACAA.......................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TGT--CAGCGGACTCATACAAAC.....................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCCTCCTT.......................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ATACAAACCCTTTCAGACGA.........................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TTTCAGACGAATTTTTTTTCT..............................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAACG..2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001011000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TTTTTTTCTTC----TTTCAGA----------GTCA...................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ATACAAACCCTTTCAGACGAA........................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000
........................................................................................................................................................................................................................TGT--CAGCGGACTCATACAAACCCTT.................................................................................................................................2514.0040000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TCCTTCCAACCGTTACATACTT-T-------TCAAC........................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GT.....2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTCTTC----TTTCAGA----------GTCAAGT................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TCAAAA----AAAATCCAAACATGG........................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TAAGGTCTAAGTGT--CAGCGG.................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................CTCATACAAACCCTTTCAGAC...........................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTGAAC---------------AGA------ACAAGCAG--------GAACG..2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TTCAGACGAATTTTTTTTCTT.............................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................T-T-------TCAACGAATATACAATAGTAAAC......................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................CTTTCAGACGAATTTTTTTTC...............................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATAAATATGTTCCAAC--------------TTAAG...................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GTTCCAAC--------------TTAAGGTCTAAGT...........................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................GTCTAAGTGT--CAGCGGACTCA............................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTC.............................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CAAGTCAAAA----AAAATCCAAAC............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTTTTCTTC----TTTCAGA----------GTCA...................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACATGGGTATTGAAC---------------AGA------ACAAGCAG--------.......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................AAGTGT--CAGCGGACTCATACA........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TCCAAC--------------TTAAGGTCTAAGTGT--CAGCGGA................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--CAGCGGACTCATACAAACC....................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTAAGTGT--CAGCGGACTCATA..........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------TG.....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TT-T-------TCAACGAATATACAATAGTAAAC......................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAAC...2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TCAACGAATATACAATAGTAA........................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--CAGCGGACTCATACAAAC.....................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TAAATATGTTCCAAC--------------TTAAGGTCTAA.............................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATGGCTAAGTCGACGT--------------------------------------------------GTT..............................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TATTGAAC---------------AGA------ACAAGCAG--------GAACGTA2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GGTATTGAAC---------------AGA------ACAAGCAG--------GAAC...2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CATGGGTATTGAAC---------------AGA------ACAAGCA................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCCT...........................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATATGTTCCAAC--------------TTAAGGTCT...............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTAAGTGT--CAGCGGACTCATACAAAC.....................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTTTTTTTCTTC----TTTCAGA----------GTCAAGTCA..............................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGTTCCAAC--------------TTAAGGTCTAAG............................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................TGT--CAGCGGACTCATACAAACCCT..................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TATACAATAGTAAACTGA----------------------------TAT....................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGAAC---------------AGA------ACAAGCAG--------GAACGT.2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GA--------GATGGCTAAGTCGACGT--------------------------------------------------GT...............................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000
...............................................................................................................................................................................................................................................................TTTTTCTTC----TTTCAGA----------GTCAAG.................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CTAAGTGT--CAGCGGACTCA............................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TC----TTTCAGA----------GTCAAGTCAAAA----AAAA...................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATAGTAAACTGA----------------------------TATAAATAT..............................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGAAC---------------AGA------ACAAGCAG--------GAACG..2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GCTAAGTCGACGT--------------------------------------------------GTTCT............................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GCGGACTCATACAAACCC...................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TGT--CAGCGGACTCATACAAACC....................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GCGGACTCATACAAACCCTT.................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTTTCTTC----TTTCAGA----------GTCAAG.................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGGCTAAGTCGACGT--------------------------------------------------GTTCCTCC.........................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AAATCCAAACATGGGTATTGA.................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAGCGGACTCATACAAACCC...................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................T-T-------TCAACGAATATACAATAGTAAACTGA----------------------------.......................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTTTTTTTCTTC----TTTCAGA----------GTCAAG.................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TTTCAGA----------GTCAAGTCAAAA----A......................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--CAGCGGACTCATACAAACCC...................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................TC----TTTCAGA----------GTCAAGTCAAAA----AAA....................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGCTAAGTCGACGT--------------------------------------------------GTTCCTCCTT.......................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................AC---------------AGA------ACAAGCAG--------GAACGT.1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................CCCTTTCAGACGAATTTTTTTTCTTC----........................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AAC--------------TTAAGGTCTAAGTGT--CAGCG..................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................GAAC---------------AGA------ACAAGCAG--------GAACGTT2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CAAACCCTTTCAGACGAATTT.....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................CATACAAACCCTTTCAGACG..........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--CAGCGGACTCATACAAACCCTTTC...............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......GA--------GATGGCTAAGTCGACGT--------------------------------------------------GTTCCTCC.........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................C--------------TTAAGGTCTAAGTGT--CAGCG..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................CCCTTTCAGACGAATTTTTTTTCTTC----TT......................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TTTTTTTCTTC----TTTCAGA----------GTCAAGTC...............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CGAATTTTTTTTCTTC----TTTCA...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GGTCTAAGTGT--CAGCGGACT..............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGGGTATTGAAC---------------AGA------ACAAGCAG--------G......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................T--CAGCGGACTCATACAAACCCTTTCAGAC...........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AAC--------------TTAAGGTCTAAGTGT--CAGC...................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAAGTGT--CAGCGGACTCATA..........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TATACAATAGTAAACTGA----------------------------TA.....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TACAAACCCTTTCAGACGAATT......................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ATTGAAC---------------AGA------ACAAGCAG--------GAACGT.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CTCATACAAACCCTTTCAGACGAATTT.....................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTAAGGTCTAAGTGT--CAGCGGACTCA............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TTC----TTTCAGA----------GTCAAGTCAA.............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................TCCAAC--------------TTAAGGTCTAAGTGT--CAGCGG.................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TAAGGTCTAAGTGT--CAGCGGAC...............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
CATAGGGA--------CATGGCCATATCGACTGGG-TAGTGATCCTGA---------TGT----TTACTTTATAGAGTCGCAAGCGCTACCTTCTAGTTGTTACATACTAGTCTTCTTCTATACTAATCTA-----GTATACCGA--------------------CCAACAGACC--G------------CATTTCTGCTTATT--------------------CTGACTCATACAAACCCTTTCAGACGGACTGGTTT-CTTC----TTTCAGG----------GTCAAATCAAAG----A-AGTCCTGGCATAGGAATTGAAT---------------AGA------ACAGGCAC--------AAACGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................TCAAAG----A-AGTCCTGGCATAGGAAT....................................................2411.0010000100
droYak3
CGGACGGA--------CATGACCAGATCGACTCGCCTGTTTATCCTGATCAAGAATATAT----ATACTTTATATTGTCGGAAACGCTTCCTTCTGCCTGATACATACTT-T-------CCAACGAAG----------GTACCC-TTTTA-CTC--T----TCGAGTAACAGGTA---------------CAATA--A-----------------------------------------------------------------------------------------------------------ATCAAATGTATAAAGTATGG---------------AAA------ACAA--GG--------AAATATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................TTGTCGGAAACGCTTCCTTCTGCCT.................................................................................................................................................................................................................................................................................25190.16300300000000
..........................................................................TTGTCGGAAACGCTTCCTTCTGCC..................................................................................................................................................................................................................................................................................24190.11200200000000
droEug1
CTAGTCCG--------TATAGTTTAGTA-------------------------------------------------------------------------------------------------TACCTA-----GTATACCA-TTTCA-CTC--T----ATGAGTAACGGGTA---------------TAAAA--ATAAAC-TGAAAATCAATGTAT--TCTTGATCGCCTATCCGCCCGTCCAGGCGTTTGGTTTG-------------ACA----------TTTTTATCAATA----------CCTATAGATTTACCAAACAAAATT-----------A------TTGGGCAG--------TGACGTCSizeHit CountTotal NormTotal
No Reads
droBia1
TGATCG---------------------------------------------GGAATATAT----ATACTTTATGAAGTCAAAAACGCTTCCTTCCACCTGTTACATACTT-T-------CTGGCGAATCTA-----GTATACCCATTTTA-CTC--T----ACGAGTAACGGGTATAAACACCTCTTAAC----------------GAGGTATG-GGGTCGTT--------G--------------------------C-GATT----GTGCACA----------ATCAACGTACAA----A-AGTTCTGATATCGACTTTT---------GTGACGAATAGA------G----------------CTTGTASizeHit CountTotal NormTotal
No Reads
droTak1
CAGACGGACAGACTGACATGGCTATATCGACTCTG--------------------------------------------------------------CTGTTACATACTT-T-------TGAACGAATACT-----ATACACCA-TTTTA-CTG--T-----TAAGTAACGGGTA---------------TAAAA--AC----------------------------------------TCTCA-TAACAAACGTTTTT-TATA----TACCAAA----------ATAAA------C----A-A-------------CTTTC---------GTCACAAATG-AGTTCCAACTT-------------TGGATASizeHit CountTotal NormTotal
No Reads
droEle1
CAAACTGA--------CTTGATTA---------------------------AGAATACGTACATATACTTTAAAGGGTCGAAAACCCTTTTATATATCTGTTACATACTT-T-------TCAACGAACACA-----CTATTTCC-TTTTA-CTC--T----TCGAGGGG---CTA---------------TAATT--AAAAGTC--------------------ATGAAATGTTATAACTCTTTTGCAAGAACTTTTTG-ATTT----TTT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGGA------------CATGGCTATATCGACTCGGCTAGTGAACCTGATCAAGAATATAT----ATACTTTATAGGGTCGGAAACGCTTCCTTCTAGCTGTTACATACTT-T-------TGCACGAATACA-----ATATACCC-TTTTA-CTC--T----ACGACTAACGGGTA---------------TAATT--AAGAG------------------------------------CTGGTTTTGATAAATACTTT--CCCATTGATTTCACT----------GTCAAGTCAAAAGTCAAAAATTCAGAAG--AGTA--------AATTGT-------CGC------AATACAATAAAGAGGCCAGCATASizeHit CountTotal NormTotal
No Reads
droFic1
CAGACGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGTT--------------------------------------------------------------------------------------------------TCAAACAT-G-------CAACCAACAAAA-----GCAAAGTGA----------------------------AATAAA------------------------------------AAGTAATT--------A----------TAAAAACGAAACTCTGG-TTTC----TTTTTAA----------GCCGAAGCACTT----T-----------------------------------------------ATTTGCAG--------AGACACASizeHit CountTotal NormTotal
No Reads
droAna3
CAGACGGA--------AATTCTTACATCGACGCC-----------------------------------------------AGTTGTCTCCTTCACTGCTTTGCACACTT-T-------TGACTAAAA-TT-----ATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................TGTCTCCTTCACTGCTTTGCA...........................................................................................................................................................................................................................................................................21200.60121200000
..................................................................................GTTGTCTCCTTCACTGCTTTGCA...........................................................................................................................................................................................................................................................................2320.501100000
........................................................................................TCCTTCACTGCTTTGCACACT.......................................................................................................................................................................................................................................................................21200.306600000
......................................................................................TCTCCTTCACTGCTTTGCACA.........................................................................................................................................................................................................................................................................21200.102000002
.....................................................................................GTCTCCTTCACTGCTTTGCAC..........................................................................................................................................................................................................................................................................21200.102200000
.....................................................................................GTCTCCTTCACTGCTTTGCA...........................................................................................................................................................................................................................................................................20200.102200000
.....................................................................................GTCTCCTTCACTGCTTTGCACACTT-T-------TG...........................................................................................................................................................................................................................................................28200.102200000
......................................................................................TCTCCTTCACTGCTTTGCA...........................................................................................................................................................................................................................................................................19200.051100000
........................................................................................TCCTTCACTGCTTTGCACACTT-.....................................................................................................................................................................................................................................................................22200.051100000
...........................................................................................TTCACTGCTTTGCACACTT-T-------T............................................................................................................................................................................................................................................................21200.051100000
........................................................................................TCCTTCACTGCTTTGCACAC........................................................................................................................................................................................................................................................................20200.051010000
....................................................................................TGTCTCCTTCACTGCTTTGCACACT.......................................................................................................................................................................................................................................................................25200.051100000
.........................................................................................CCTTCACTGCTTTGCACACTT-.....................................................................................................................................................................................................................................................................21200.051100000
......................................................................................TCTCCTTCACTGCTTTGCACACTT-T-------T............................................................................................................................................................................................................................................................26200.051100000
droBip1
TTAT-GGTCA------GATACTTA--------------------------------------------------TGGTCAGAGATGCTTTCTTTTCTTTGTTACATACAT-T-------CAAACGAATAAA-----AAATGCAA-TTCTA-CGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CAGACAGA--------CATGGCTCAATC-----------------------------TAA----ATACTTTATGGGGTT-----------GTTCTGGACGTTACACACAC-TCACTTTTACCACAAATCTA-----ATATACCT-CAATA-CTCATT----TTGAGTATCGGGTA---------------TACAA--ACGGA----------------------------------------------GCAATTTTTTT-CTTGTAAATTTTGGA----------GTCAG---------------------------------------------------------------------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................TCATT----TTGAGTATCGGGTA---------------TACAA--ACG............................................................................................................................................................................2713.0030000000300
.....................................................................................................................TTACCACAAATCTA-----ATATACCT-CAATA-C............................................................................................................................................................................................................................2821.5030020000100
..................................................................................................................................................................TGAGTATCGGGTA---------------TACAA--ACGGA----------------------------------------------G...........................................................................................................................2411.0010100000000
.................................................................................................................................................................TTGAGTATCGGGTA---------------TACAA--ACGGA----------------------------------------------GCA.........................................................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................TTTTTT-CTTGTAAATTTTGGA----------GTCA...................................................................................2520.5010000000010
.....................................................................................................................TTACCACAAATCTA-----ATATACCT-CA.................................................................................................................................................................................................................................2420.5010100000000
.....................................................................................................................TTACCACAAATCTA-----ATATACCT-CAAT...............................................................................................................................................................................................................................2620.5010100000000
.....................................................................................................................TTACCACAAATCTA-----ATATACCT-C..................................................................................................................................................................................................................................2320.5010100000000
.................................................................................................................................................................................................AA--ACGGA----------------------------------------------GCAATTTTTTT-CTTGTAAATT......................................................................................................2830.3310100000000
.................................................................................................................................................................................................AA--ACGGA----------------------------------------------GCAATTTTTTT-CTTGTAAATTT.....................................................................................................2930.3310100000000
.....................................................................................................................TTACCACAAATCTA-----ATATACCT-CGC................................................................................................................................................................................................................................25120.0810100000000
....................................................................................................................TTTACCACAAATCTA-----ATATAC......................................................................................................................................................................................................................................21200.0510000000010
CAGACAGA--------CATGGCTCAAT.........................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
..........................................................................................................................................................ATT----TTGAGTATCGGGTA---------------TAC...................................................................................................................................................................................20200.0510100000000
droPer2
CAGACAGA--------CATGGCTCAATCGACTCGGCTATTGATGCTGATCAAGAATATATACATATAATTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACAT-CCACTTTTACCACAAATCTA-----ATATACCC-CAATA-CTCATT----TTGAGTATCGGGTA---------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGGG--------GAACGT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................TGGGGTCGGAAACGATTCCTTCTGGAC.................................................................................................................................................................................................................................................................................27200.204040000
........................................................................................TCCTTCTGGACGTTACACACAT-CCACTT...............................................................................................................................................................................................................................................................28200.153030000
..........................TCGACTCGGCTATTGATGC.......................................................................................................................................................................................................................................................................................................................................19200.102000002
...ACAGA--------CATGGCTCAATCGACTCG..................................................................................................................................................................................................................................................................................................................................................23200.102020000
........................AATCGACTCGGCTATTGATG........................................................................................................................................................................................................................................................................................................................................20200.102000002
..........................................TGCTGATCAAGAATATATACATATAAT...............................................................................................................................................................................................................................................................................................................27170.061000001
....................................................................................................TTACACACAT-CCACTTTTACCA.........................................................................................................................................................................................................................................................22200.051001000
...................................................................................................................................................................GAGTATCGGGTA---------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------CGAGGGG--------GAAC...26200.051000001
droWil2
CGGACGGA--------CATGGCTAGATCGACTCGGTTGTTGATCCTGATCAAGAATATAT----ATACTTTGTGGGGTCGCAGATGCTTCCTTCTGCCTGTTACATACAT-T-------TTGGCGACTTTA-----ATATACCA-TTTCA-CCC--T----ATGGGTGTATGGTA---------------TAAAA--AGCGA--------------------------ATCAT-CAAGCCATTTCTGA----T---TTT-TTTT----TTTCGAA----------GACTGAT--------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................TATGGTA---------------TAAAA--AGCGA--------------------------ATCAT-CAAG......................................................................................................................................2611.00100010
.............................................................................................................................................................................TA---------------TAAAA--AGCGA--------------------------ATCAT-CAAGCCATT.................................................................................................................................2620.50101000
...................................................................................................GTTACATACAT-T-------TTGGCGACT....................................................................................................................................................................................................................................................21200.25505000
.................................................................................AGATGCTTCCTTCTGCCTGTT..............................................................................................................................................................................................................................................................................21200.15303000
.................................................................TACTTTGTGGGGTCGCAGATGCTTCC.........................................................................................................................................................................................................................................................................................26200.05100010
..................................................................ACTTTGTGGGGTCGCAGATGC.............................................................................................................................................................................................................................................................................................21200.05110000
......................................................................TGTGGGGTCGCAGATGCTTCC.........................................................................................................................................................................................................................................................................................21200.05100010
.........................................................TAT----ATACTTTGTGGGGTCGCAGATGCT............................................................................................................................................................................................................................................................................................27200.05100010
.................................................................................................................................TA-----ATATACCA-TTTCA-CCC--T----ATGGGTGTA..........................................................................................................................................................................................................28200.05101000
...................GGCTAGATCGACTCGGTTGTTGATC........................................................................................................................................................................................................................................................................................................................................25200.05100010
...................................................................CTTTGTGGGGTCGCAGATGCG............................................................................................................................................................................................................................................................................................21200.05110000
....................................................................TTTGTGGGGTCGCAGATGC.............................................................................................................................................................................................................................................................................................19200.05100100
.................................................................TACTTTGTGGGGTCGCAGATGCTTC..........................................................................................................................................................................................................................................................................................25200.05100010
.........................................................TAT----ATACTTTGTGGGGTCGCAGATG..............................................................................................................................................................................................................................................................................................25200.05100010
...................................................................CTTTGTGGGGTCGCAGATGCT............................................................................................................................................................................................................................................................................................21200.05110000
droVir3
CAGACGGA--------CATGGCTAGAGCAACTCGGCTATTGGTGCTAATCAAGAATATAT----ATACTTTACGGGGTCGGAGATGTTTCCTTCTGCCTGTTACATACAT-TTGCATTTTGCACAAATACA-----ATATACCC-TTATA-CCCACTCTTTATAGGTTCAGGGTA---------------TAAAA--AGCACA-AGA-----------------------------ATG---------CAAA------------------------------------------------------CCGGGTAAATGTATTCAACGT--------------AA------ATAGCGAA--------GAGCACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................TACAT-TTGCATTTTGCACAAATACA-----A...........................................................................................................................................................................................................................................26200.204001000000000000000000000030000000000000000000000000000000000000
.................................................................................................CTGTTACATACAT-TTGCATTTTGC..........................................................................................................................................................................................................................................................24200.102000000000000000000000000000011000000000000000000000000000000000
..................................................................................................TGTTACATACAT-TTGCATTTTG...........................................................................................................................................................................................................................................................22200.102000000000000000000000000011000000000000000000000000000000000000
.................................................................................................CTGTTACATACAT-TTGCATTTTGCACAAA.....................................................................................................................................................................................................................................................29200.102000000000000000000000000000010010000000000000000000000000000000
....................................................................................................TTACATACAT-TTGCATTTTGCACA.......................................................................................................................................................................................................................................................24200.102001000000000000000000000100000000000000000000000000000000000000
.................................................................................................CTGTTACATACAT-TTGCATTTTGCACA.......................................................................................................................................................................................................................................................27200.102000000000000000000000000000002000000000000000000000000000000000
......................................................................................................ACATACAT-TTGCATTTTGCACAAA.....................................................................................................................................................................................................................................................24200.051000000000000000000000000000000100000000000000000000000000000000
...................................................AGAATATAT----ATACTTTACGGGGTCGG...................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................................TCTGCCTGTTACATACAT-TTG..................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
..........................................TGCTAATCAAGAATATAT----ATACTTT.............................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000010000000000000000000000000000000000000
.................................................................................................CTGTTACATACAT-TTGCATTTTGCACAAC.....................................................................................................................................................................................................................................................29200.051000000000000000000000000001000000000000000000000000000000000000
..................................................................................................TGTTACATACAT-TTGCATTTTGCACA.......................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
..................................................................................................TGTTACATACAT-TTGCATTTTGCAC........................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................AAGAATATAT----ATACTTTACGGGG.......................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................TTCCTTCTGCCTGTTACATACAT-TTGC.................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000100000000000000000000000000
........................................................................................TCCTTCTGCCTGTTACATACAT-TTGC.................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................ATACA-----ATATACCC-TTATA-CCCA.........................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................TCTGCCTGTTACATACAT-TTGC.................................................................................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
.................................................CAAGAATATAT----ATACTTTACGGGG.......................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
................................................TCAAGAATATAT----ATACTTTACGGGG.......................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
CAGACGGA--------CAGGGCCAAATCGACTCAGCTCGTCGCCCTGATCAAGAATATAT----ATACTTTG---TGTCTGCCACGCCTCCTTCTGCCTGTTACATACAT-T-------TCAACAAAACCA-----TTATACCC-TGATTTCCCATTGAAAATGGGTTCTGGGTA---------------TAA---------------------------------------TAAAACTACTTCCAGAAAAATGTTCTTTCTTC----ATGCACGAAGAGACATTTCTAGGTCATAA----G-TGTACTGATAATGGTATTTTAC---------------CAG------ATGACAAA--------AAATAT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................TTTG---TGTCTGCCACGCCTCCTT.......................................................................................................................................................................................................................................................................................2211.001000010
............................................................................................TCTGCCTGTTACATACAT-T-------TCA..........................................................................................................................................................................................................................................................22200.255500000
......................CAAATCGACTCAGCTCGTCGC.........................................................................................................................................................................................................................................................................................................................................21200.153000030
........................................................................................................................................................................................................................................................................................................A----G-TGTACTGATAATGGTATTTTAC---------------CAG------A......................28160.132200000
....................................................................................................................................................................................................................................................................................................CATAA----G-TGTACTGATAATGGT......................................................21160.061100000
........................................................................................................................................................................................................................................................................................................A----G-TGTACTGATAATGGTATTTTAC---------------CAG------C......................28160.061100000
.........................................GCCCTGATCAAGAATATAT----ATACTTT.............................................................................................................................................................................................................................................................................................................26200.051010000
CAGACGGA--------CAGGGCCAAATCGACTCAGC................................................................................................................................................................................................................................................................................................................................................28200.051000010
............................GACTCAGCTCGTCGCCCTGA....................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
CGATCA---------------------------------------------AAAATACAT----AAACAGTACA--------TACTCTTGCATAACCTTATTACACAATT-T-------ATTA-------------------------------------------------------------------------------------------------------------------------------AATATTTT-----------------------------------------------------------GAT------------------------------TATAT-A--------AAAAATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/15/2015 at 04:06 PM