dsi_3539

GCCAATTTGTCCGATGATCTCGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATGTCCTGCAGCATCCCATCTTGCTAGCTTCATCAGCCGAAAGTGTCCTTGATTTTGTCCACAGTTGTCCTGAACGCTGCCATTTCTTCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGCCAGC ************************************************.((((((...))))))...(((((...((((((((((((...))))))(((.(((....((((((........)))).))..)))..))).......))))))..........((((.((.....))))))......)))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
........GTCCGACGATCTCGA...................................................................................................................................................................................................................................	15	1	7	9.00	63	60	0	0	0	0	3	0
.........................................................................................................................................................................................................................GAGCAGCGACGTCTTTGC...............	18	0	1	1.00	1	0	1	0	0	0	0	0
......TTGTCCCATGATCTCGA...................................................................................................................................................................................................................................	17	1	1	1.00	1	0	0	0	1	0	0	0
....................CGAACGTCTGCCGGCTATTGT.................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0
.CCAATTTGTCCGATGATCTCGAACGTCT.............................................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................ATGCAAGTGAGTAGTGACGT.....................	20	2	1	1.00	1	0	0	0	0	1	0	0
.........................................................................GCAATGAAGAGCCCGGTTA..............................................................................................................................................................	19	3	10	0.80	8	0	0	8	0	0	0	0
........GTCCGACGATCTCGAA..................................................................................................................................................................................................................................	16	1	4	0.75	3	3	0	0	0	0	0	0
........GTCCGACGATCTGGAA..................................................................................................................................................................................................................................	16	2	20	0.70	14	10	0	0	1	0	2	1
..............................................................................................................................................................GTCCGTAGTTGTCCTGA...........................................................................	17	2	6	0.17	1	0	0	0	0	0	1	0
......................................................................................................................................................................................CATTTCTTCTGCTTTAAGCGA...............................................	21	3	7	0.14	1	1	0	0	0	0	0	0
...........................................................................................................................................................TTTGTCCACTATTGTCCT.............................................................................	18	2	13	0.08	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................CAAGTGAGCAGGGAC.......................	15	1	14	0.07	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................CTAACGTCTATGCAAGTGT...............................	19	3	16	0.06	1	0	1	0	0	0	0	0
..........................................................................CAATGAAGAGCCCGGTTA..............................................................................................................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0

CGGTTAAACAGGCTACTAGAGCTTGCAGACGGCCGATAACACGCCGCGCGGATACAGATACTGTATTAATCTTCGTTATTCCTTGGGCCAATGACCCACCATTACAGGACGTCGTAGGGTAGAACGATCGAAGTAGTCGGCTTTCACAGGAACTAAAACAGGTGTCAACAGGACTTGCGACGGTAAAGAAGAGGAAAGTCGGTGGCAGATACGTTCACTCGTCGCTGCAGAAACGTGTAGGTGGCGGTCG ************************************************.((((((...))))))...(((((...((((((((((((...))))))(((.(((....((((((........)))).))..)))..))).......))))))..........((((.((.....))))))......)))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR618934 dsim w501 ovaries	M024 male body
..................................................................................................................................AAGTAGTCGGCTTTCACA......................................................................................................	18	0	1	1.00	1	1	0	0
................TAGAGCTTGCAGACTGT.........................................................................................................................................................................................................................	17	2	8	0.13	1	0	1	0
.................................CGATAGGACGCCGCGC.........................................................................................................................................................................................................	16	2	18	0.06	1	0	1	0
................................................................................................................................CGAAGAAGTAGGCTTCCAC.......................................................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:15435336-15435585 +	dsi_3539	GCCAATTTGTCCGATGATCTCGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATGTCCTG-----CAGCA---TCCC----------------------------------------------------------------------------------AT-------------CTTGC----TAGCTTCA--------------------------------------------TCAGCCGAAAGTG----------------------TCC---T----T----------GATTTTGTCCACAG--TTGTCCTGAACGCTGCCATTT-------------------------------------C----------T---------TCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGCCAGC
droSec2	scaffold_0:16306103-16306352 +		GCCAATTTGTCCGATGATCTCGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATGTCCTG-----CAGCA---TCCC----------------------------------------------------------------------------------AT-------------CTTGC----TAGCTTCA--------------------------------------------TCAGCCGAAAGAG----------------------TCC---T----T----------GATTTTCTCCACAG--TTGTCCTGAACGCTGCCATTT-------------------------------------C----------T---------TCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGTCAGC
dm3	chr3R:5599308-5599558 -		GCAAATTTGTCCGATGATCTTGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATATCCTG-----CAGCA---TCTC----------------------------------------------------------------------------------AT-------------CTTGC----CAGCTTCA--------------------------------------------TCAGCCGAAAGTG----------------------TCC---T----T----------GATGTTGTCCACAG--TTGTCCTGAACGCAGCCGTTTT------------------------------------C----------T---------TCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGCCAGC
droEre2	scaffold_4770:16005845-16006094 +		GCCAACTTATCCGATGATCTCGACCGTCTGCCGGCAATAATGCGACGCGCCTATGTCTATGACATAATAAGGAGCGACAAGGAACCCGGTTACTGGGTGGTAATGTTCCG-----CAGCA---TCCC----------------------------------------------------------------------------------AT-------------CTTGC----CAGCTTCA--------------------------------------------TCAGCCGATAAAG----------------------TCC---T----A----------GATGTTGTTTACAG--TTGTCCTGAACGCAGCCGTTT-------------------------------------C----------T---------TTTCCTTTCAGCCACCTTCTATGCAAGTGAGCAGCGACGTCTTCGCACATCCCCCGCCTGC
droYak3	3R:9645598-9645847 -		GCCAATTTATCCGATGATCTCGACCGTCTGCCGGCTATTATGCGACGCGCATATGTCTATGACATAATAAGAAGCGCTAAGGGACCCGGTTACTGGGTGGTAATGTCCCG-----CAGCG---TCCC----------------------------------------------------------------------------------TT-------------CTTGC----CAGCTTTA--------------------------------------------TCAGCCAAAAGAG----------------------CCT---T----T----------GATGTTGTCTACAG--TTGTCCTGAACGCAGCCATTT-------------------------------------C----------T---------TTTCATTCCAGCCGCCTTCTATGCAAGTGAGCACCGACGTCTTTGCACATCCACCGCCCGC
droEug1	scf7180000407136:94719-94965 +		GCCAACCTGTCCGACGACCTCGATCGTCTGCCGGCTATCGTACGACGTGCCTATGTCTATGACATAATAAGGAGCAATAAGGCTCCCGGTTACTGGGTGGTAATGTCCCG-----CAGCG---TCTC----------------------------------------------------------------------------------TC-------------CTTAC----CAGCTACT--------------------------------------------TCAGCGGTTTGCG----------------------TCT---A----C----------GATG-----CACAGCCTTGTCTTGAACGCAGCCGTTT-------------------------------------C----------T---------TTTTGTTCCAGCCACCTTCTATGCAAGTGAGCACCGACGTCTTCGCCCATCCTCCGCCTGC
droBia1	scf7180000302402:3079194-3079439 -		GCCAACCTGTCCGACGACCTCGATCGTCTGCCGGCAATCATGCGGCGCGCTTACGTCTATGACATAATTAGGAGCAATAAGGCTCCCGGTTACTGGGTGGTAATGTCCAG-----CA------TCCC----------------------------------------------------------------------------------T------------------------ATCCTCT-----------------------------TCAGCACCAGCTACATCCGT-------G----------------------ATCCCC----------------GAAG-----CACAGCCTTGTCCTGAACGCAGCCGTTT-------------------------------------C----------C---------TCTCTTTCCAGCCTCCTTCCATGCAAGTGAGCGCCGACGTCTTCGCCCATCCGCCGCCTGC
droTak1	scf7180000415653:644848-645072 -		GCCAACCTCTCCGACGACCTCGAGCGCCTGCCGGCAATCATGCGGCGCGCCTACGTCTATGACATAATTAGGAGCAATAAGGCTCCCGGTTACTGGGTGGTAATCCCT------------------C----------------------------------------------------------------------------------TT-------------CTCAT----CA-----------------------------------TCAGCATCAGCTACATC------------------------------------------------------------------CAGTCTTGTCCTGAACACAGCCGTCTA------------------------------------C----------T---------TCTCTTTGCAGCCACCTTCCATGCAAGTGAGCACCGACGTCTTCGCCCATCCGCCGCCTGC
droEle1	scf7180000491047:36789-37026 +		GCCAACCTGTCCGACGACCTCGAGCGTCTGCCGGCTATTAAGCGGCGCGCTTACGTCTATGACATAATTAGGAGCAATAAGGGTCCCGGTTACTGGGTGGTAATGTCTTG-----CAGCA---GAGC----------------------------------------------------------------------------------TC-------------CT------------CCA--------------------------------------------CCAGACAC-CGAG----------------------TCC---A----C----------GATG-----CACAGCCCTGTCCTGAACGCAGCCGTTT-------------------------------------C----------C---------TTTCTTTGCAGCCTCCTTCCATGCAAGTGAGCACCGACGTCTTCGCCCATCCGCCGCCCGC
droRho1	scf7180000777865:379075-379321 -		GCCAACCTTTCCGACGACCTCGAGCGTTTGCCGGCTATCATGCGGCGCGCCTACGTCTATGACATAATTAGGAGCAATAAGGGTCCCGGCTACTGGGTGGTAATGTCCTG-----CAACA---AAAC----------------------------------------------------------------------------------TC-------------CTC---CAACAGCCGCA--------------------------------------------TCAGCCTT-AGAG----------------------TCC---A----C----------GATG-----CACAGCCTTGTCCTGAACGCAGCCGTTT-------------------------------------C----------T---------TTTCTTTCTAGCCTCCTTCCATGCAAGTGAGCACCGACGTCTTCGCCCATCCGCCGCCCGC
droFic1	scf7180000454104:1248681-1248930 +		GCCAATCTATCCGACGACCTCGATCGTCTGCCGGCTATTATGCGACGCGCCTACGTCTATGACATAATTAGAAGCAATAAATCTCCCGGTTATTGGGTGGTAATGTCCTG-----CAGCA---GCAC----------------------------------------------------------------------------------TC-------------CTTCTCAGTCAGCCCCA--------------------------------------------TCCGACGC-AGAG----------------------TCC---A----T----------GATG-----CACAGCCTTGTCCTGAACGCAGCCGTTT-------------------------------------C----------T---------TATCATTGCAGCCACCTTCCATGCAAGTGAGCAGCGACGTCTTCGCCCATCCGCCGCCTGC
droKik1	scf7180000302706:1805766-1806011 +		GCCAACCTGTCCGACGACCTCGATCGTCTGCCGGCCATCATGCGGCGAGCTTACGTCTATGACATAATTAGGAGCAATAAGGGGCCCGGTTATTGGGTGGTAATATCCGG-----CGACAA--GCAG----------------------------------------------------------------------------------AT-------------CCTTC----TAACCTCA--------------------------------------------TCAGTCATATGCC----------------------TCA---C----C----------GC--TC----GCTCCCAGGTCCTGAACGCCGCTGTTT-------------------------------------C--------------------TCTCTTTCCAGCCACCGTCTATGCAAGTGAGCAGCGACGTGTTCGCCAATCCGCCGCCAGC
droAna3	scaffold_12911:2636988-2637347 +		GCCAACTTATCCGACGACCTGAGTCGTCTGCCGACTCTGATGCGACGCGCCTACGTCTATGACATAATACGGAGCAATAAGGGGCCTGGTTACTGGGTGGTAATTGAAAA-----GAG--------C----TTTTTTTTATACCCCTGCAAATCGGATTTCTCTCATTATTAGCGGATCCTAAAGCCCATTTCAGTTAAAGGTTAAAACTG-------------CAT---CCGCAAGGGTA------------TAAAATCTC---------------TAGCTCC-TTATGCATATATTTCACAGATTTTACTCTACAGCAT-----T----A----------GAGGTT----GCAGTCTTGTCCTGACCTCAGCAATTC-------------------------------------G--------TTC---------TTTCGTTCCAGCCTCCTTCTATGCAAGTGAGCCGCGACGTGTTTGCTCATCCACCGCCAGC
droBip1	scf7180000396714:469867-469970 -		GCCAACCTATCCGACGACCTGAGTCGCCTGCCGACTCTGATGCGACGCGCCTACGTCTATGACATAATACGGAGCAATAAGGGGCCTGGTTACTGGGTGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	2:12487230-12487472 +		GCCAACCTGTCCGACGACCTTGACCGTCTGCCGGCCATTCAGAGACGGGCCTATGTCTATGACATAATTAGGAGCCATAAAGGGCCAGGTTATTGGGTGGTAATGGCCAA-----CAACA---ACACTATAGT----------------------------------------------------------------------------GCACTCCGCAATCATCTCGC----C--------------------------------------------------------------------------------------------A-----------------TGTCATATACAT--TTGACTTGAATGCTGCTGTTC-------------------------------------T----------C---------TGTCGTTTCAGCCGCCGTCCATGCAAGTGAGTAGCGACGTCTTTGCCCATCCGCCACCTGC
droPer2	scaffold_0:7980666-7980908 -		GCCAACCTGTCCGACGACCTTGACCGTCTGCCGGCAATTCTGAGACGGGCCTATGTCTATGACATAATTAGGAGCCATAAAGGGCCAGGTTATTGGGTGGTAATGGCGAA-----CAACA---ACAAAATAGT----------------------------------------------------------------------------GCACTCCGCAATCATCTCGC----C--------------------------------------------------------------------------------------------A-----------------TGTCACATACAT--TTGACTTGAATGCTGCTGTTC-------------------------------------T----------C---------TGTCGTTTCAGCCGCCGTCCATGCAAGTGAGTAGCGACGTCTTTGCCCATCCGCCACCTGC
droWil2	scf2_1100000004902:6290028-6290306 -		GCCAACCTGTCCGATGACATTGAACGACTGCCTGCCCTGCAGAGAAGGGCCTACGTTTACGACATAATTAGGAGCAATAAGGGGCCCGGCTATTGGGTGGTAATTTTCAA-----ATAT---------------------------------------------------------------------------------------------------------AT----------AGTCA-----------------------------TCAGG--CAGCTGAATCA--------------------------------------TATCCTGCTTACATCAA------------A--TCCGTGTGCC---AATGG----TGCTTTAAAAATCACATCGTGCCACATTTGTGTCATCTTTTTGCATTC---------CTTCATTCCAGCCACCTTCTATGCAAGTGAGCAGCAACGTATTTGCTCATCCGCCACCAGC
droVir3	scaffold_13047:16028157-16028406 +	dvi_17117	GCCCACCTGGCCGACGATGTTGACAAAATGCCGGCGATGCAGCGACGCGCCTATGTGTATGACATAATTAGAAGCAATAAAGGCCCCGGTTACTGGGTGGTAATGCCATT-----CATAT---AATC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCATCATCATCATCCACATCAT------------------------------------------------------------------G--TTGGCCAGTC---AGTCG----CAATTTAATTATCCTGT-------------------T-----G----C---------TC-TCTTGTAGCCGCCGTGCATGCAGGTGAGCAGCGACGTCTTCGCCCAGCCCCCGCCCGC
droMoj3	scaffold_6540:19560289-19560577 +		GCCCACCTATCCGACGAGGTTGAGCAGATGCCGGCAATGCAGCGGCGCGCCTATGTCTATGACATAGTTCGAAGCCATAAAGGCCCCGGTTACTGGGTGGTAATTGCCAA-----TGGAA---AAGA--GACG----------------------------------------------------------------------------GCAGT-GGAAATCATCATGCGAGTCATCCTCATCTTCATGATCA--CTATCATTGTCAATATCACCATCATTATCATTAT------------------------------------------------------------------C--ATTGTTAAAT---AGTTG----C-------TCGTTTTCT-------------------C----------T---------TCTTCTTATAGCCGCCCTGCATGCAGGTGAGCAGCAACGTCTTCGACCAGCCTCCGCCAGC
droGri2	scaffold_14830:3977951-3978220 -		GCAAACTTATCCGACGATGTGGAACACATGCCGGCGATGCAGCGACGCACCTATGTTTATGACATAATTAGAAGCCATAAGAGCCCCGGTTATTGGGTGGTAATTGCCAATTCTTGAACAAGACAAC----------------------------------------------------------------------------------AC-------------------------CCTCA--------------------------------------------TCAGTCACCATA-----------------------CTT---A----T------AT-AAA--TC----AGTTGCAATTTGTAATCGCTGCTGAAA---------------------------------TTTTCTTTTTGTTTTTATTTACTGGTC-TTTTTTAGCCACCCTGCATGCAGGTGAGCAGCGACGTCTTCGCCCAGCCCCCACCCGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCAATTTGTCCGATGATCTCGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATGTCCTG-----CAGCA---TCCC----------------------------------------------------------------------------------AT-------------CTTGC----TAGCTTCA--------------------------------------------TCAGCCGAAAGTG----------------------TCC---T----T----------GATTTTGTCCACAG--TTGTCCTGAACGCTGCCATTT-------------------------------------C----------T---------TCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGCCAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCGACGTCTTTGC...............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGAACGTCTGCCGGCTATTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.CCAATTTGTCCGATGATCTCGAACGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCAATTTGTCCGATGATCTCGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATGTCCTG-----CAGCA---TCCC----------------------------------------------------------------------------------AT-------------CTTGC----TAGCTTCA--------------------------------------------TCAGCCGAAAGAG----------------------TCC---T----T----------GATTTTCTCCACAG--TTGTCCTGAACGCTGCCATTT-------------------------------------C----------T---------TCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGTCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTCTATGCAAGTGAGC.............................	20	1	2.00	2	0	0	2	0
............GATGATCTCGAACGTCTGCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGACGTCTTTGCACATCCACC......	26	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCGACGTCTTTGC...............	18	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCGACGTCTTTGC...............	20	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAGCAGCGACGTCTTT.................	20	1	1.00	1	0	1	0	0

dm3

GCAAATTTGTCCGATGATCTTGAACGTCTGCCGGCTATTGTGCGGCGCGCCTATGTCTATGACATAATTAGAAGCAATAAGGAACCCGGTTACTGGGTGGTAATATCCTG-----CAGCA---TCTC----------------------------------------------------------------------------------AT-------------CTTGC----CAGCTTCA--------------------------------------------TCAGCCGAAAGTG----------------------TCC---T----T----------GATGTTGTCCACAG--TTGTCCTGAACGCAGCCGTTTT------------------------------------C----------T---------TCTCCTTTCAGCCACCGTCTATGCAAGTGAGCAGCGACGTCTTTGCACATCCACCGCCAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...AATTTGTCCGATGATCTTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GATGATCTTGAACGTCTGCCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGCAGCGACGTCTTT.................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTCTGCCGGCTATTGTGCGGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................CA---TCTC----------------------------------------------------------------------------------AT-------------CTTGC----CAGCTTCA--------------------------------------------TC...................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACCGTCTATGCAAGTG................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GATCTTGAACGTCTGCCGGCTATTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................TGCGGCGCGCCTATGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGACGTCTTTGCA..............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCGACGTCTTTGCACAT...........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGATGATCTTGAACGTCTGCCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................ATAATTAGAAGCAATAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GTGCGGCGCGCCTATGTCTATGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GTCCGATGATCTTGAACGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGCAAGTGAGCAGCGACGTCTTT.................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AGCCGAAAGTG----------------------TCC---T----T----------GAT.........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCACATCCACCGGA...	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCCAACTTATCCGATGATCTCGACCGTCTGCCGGCAATAATGCGACGCGCCTATGTCTATGACATAATAAGGAGCGACAAGGAACCCGGTTACTGGGTGGTAATGTTCCG-----CAGCA---TCCC----------------------------------------------------------------------------------AT-------------CTTGC----CAGCTTCA--------------------------------------------TCAGCCGATAAAG----------------------TCC---T----A----------GATGTTGTTTACAG--TTGTCCTGAACGCAGCCGTTT-------------------------------------C----------T---------TTTCCTTTCAGCCACCTTCTATGCAAGTGAGCAGCGACGTCTTCGCACATCCCCCGCCTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................ATAATAAGGAGCGACAAGGAACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	1	1	0	0	2	0	0
.........................GTCTGCCGGCAATAATGCGACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCGCACATCCCCCGCC...	20	1	1.00	1	1	0	0	0	0	0	0

droYak3

GCCAATTTATCCGATGATCTCGACCGTCTGCCGGCTATTATGCGACGCGCATATGTCTATGACATAATAAGAAGCGCTAAGGGACCCGGTTACTGGGTGGTAATGTCCCG-----CAGCG---TCCC----------------------------------------------------------------------------------TT-------------CTTGC----CAGCTTTA--------------------------------------------TCAGCCAAAAGAG----------------------CCT---T----T----------GATGTTGTCTACAG--TTGTCCTGAACGCAGCCATTT-------------------------------------C----------T---------TTTCATTCCAGCCGCCTTCTATGCAAGTGAGCACCGACGTCTTTGCACATCCACCGCCCGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................ATAATAAGAAGCGCTAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................TTTA--------------------------------------------TCAGCCAAAAGAG----------------------CCT---T----T----------GAT.........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................CATAATAAGAAGCGCTAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCACCGACGTCTTTGC...............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCTATGCAAGTGAGC.............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTCTTTGCACATCCACCGCCCGC	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............GATCTCGACCGTCTGCCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...AATTTATCCGATGATCTCGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................CATAATAAGAAGCGCTAAGGGACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................TAATAAGAAGCGCTAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................AATAAGAAGCGCTAAGGGACCCGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................ATAATAAGAAGCGCTAAGGGACCC...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....ATTTATCCGATGATCTCGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGCAAGTGAGCACCGAC.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................CTATGACATAATAAGAAGCGCTAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................AATAAGAAGCGCTAAGGGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GCCAACCTGTCCGACGACCTCGATCGTCTGCCGGCTATCGTACGACGTGCCTATGTCTATGACATAATAAGGAGCAATAAGGCTCCCGGTTACTGGGTGGTAATGTCCCG-----CAGCG---TCTC----------------------------------------------------------------------------------TC-------------CTTAC----CAGCTACT--------------------------------------------TCAGCGGTTTGCG----------------------TCT---A----C----------GATG-----CACAGCCTTGTCTTGAACGCAGCCGTTT-------------------------------------C----------T---------TTTTGTTCCAGCCACCTTCTATGCAAGTGAGCACCGACGTCTTCGCCCATCCTCCGCCTGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCAACCTGTCCGACGACCTCGATCGTCTGCCGGCAATCATGCGGCGCGCTTACGTCTATGACATAATTAGGAGCAATAAGGCTCCCGGTTACTGGGTGGTAATGTCCAG-----CA------TCCC----------------------------------------------------------------------------------T------------------------ATCCTCT-----------------------------TCAGCACCAGCTACATCCGT-------G----------------------ATCCCC----------------GAAG-----CACAGCCTTGTCCTGAACGCAGCCGTTT-------------------------------------C----------C---------TCTCTTTCCAGCCTCCTTCCATGCAAGTGAGCGCCGACGTCTTCGCCCATCCGCCGCCTGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCAACCTCTCCGACGACCTCGAGCGCCTGCCGGCAATCATGCGGCGCGCCTACGTCTATGACATAATTAGGAGCAATAAGGCTCCCGGTTACTGGGTGGTAATCCCT------------------C----------------------------------------------------------------------------------TT-------------CTCAT----CA-----------------------------------TCAGCATCAGCTACATC------------------------------------------------------------------CAGTCTTGTCCTGAACACAGCCGTCTA------------------------------------C----------T---------TCTCTTTGCAGCCACCTTCCATGCAAGTGAGCACCGACGTCTTCGCCCATCCGCCGCCTGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCAACCTGTCCGACGACCTCGAGCGTCTGCCGGCTATTAAGCGGCGCGCTTACGTCTATGACATAATTAGGAGCAATAAGGGTCCCGGTTACTGGGTGGTAATGTCTTG-----CAGCA---GAGC----------------------------------------------------------------------------------TC-------------CT------------CCA--------------------------------------------CCAGACAC-CGAG----------------------TCC---A----C----------GATG-----CACAGCCCTGTCCTGAACGCAGCCGTTT-------------------------------------C----------C---------TTTCTTTGCAGCCTCCTTCCATGCAAGTGAGCACCGACGTCTTCGCCCATCCGCCGCCCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCAACCTTTCCGACGACCTCGAGCGTTTGCCGGCTATCATGCGGCGCGCCTACGTCTATGACATAATTAGGAGCAATAAGGGTCCCGGCTACTGGGTGGTAATGTCCTG-----CAACA---AAAC----------------------------------------------------------------------------------TC-------------CTC---CAACAGCCGCA--------------------------------------------TCAGCCTT-AGAG----------------------TCC---A----C----------GATG-----CACAGCCTTGTCCTGAACGCAGCCGTTT-------------------------------------C----------T---------TTTCTTTCTAGCCTCCTTCCATGCAAGTGAGCACCGACGTCTTCGCCCATCCGCCGCCCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCAATCTATCCGACGACCTCGATCGTCTGCCGGCTATTATGCGACGCGCCTACGTCTATGACATAATTAGAAGCAATAAATCTCCCGGTTATTGGGTGGTAATGTCCTG-----CAGCA---GCAC----------------------------------------------------------------------------------TC-------------CTTCTCAGTCAGCCCCA--------------------------------------------TCCGACGC-AGAG----------------------TCC---A----T----------GATG-----CACAGCCTTGTCCTGAACGCAGCCGTTT-------------------------------------C----------T---------TATCATTGCAGCCACCTTCCATGCAAGTGAGCAGCGACGTCTTCGCCCATCCGCCGCCTGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCAACCTGTCCGACGACCTCGATCGTCTGCCGGCCATCATGCGGCGAGCTTACGTCTATGACATAATTAGGAGCAATAAGGGGCCCGGTTATTGGGTGGTAATATCCGG-----CGACAA--GCAG----------------------------------------------------------------------------------AT-------------CCTTC----TAACCTCA--------------------------------------------TCAGTCATATGCC----------------------TCA---C----C----------GC--TC----GCTCCCAGGTCCTGAACGCCGCTGTTT-------------------------------------C--------------------TCTCTTTCCAGCCACCGTCTATGCAAGTGAGCAGCGACGTGTTCGCCAATCCGCCGCCAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCCAACTTATCCGACGACCTGAGTCGTCTGCCGACTCTGATGCGACGCGCCTACGTCTATGACATAATACGGAGCAATAAGGGGCCTGGTTACTGGGTGGTAATTGAAAA-----GAG--------C----TTTTTTTTATACCCCTGCAAATCGGATTTCTCTCATTATTAGCGGATCCTAAAGCCCATTTCAGTTAAAGGTTAAAACTG-------------CAT---CCGCAAGGGTA------------TAAAATCTC---------------TAGCTCC-TTATGCATATATTTCACAGATTTTACTCTACAGCAT-----T----A----------GAGGTT----GCAGTCTTGTCCTGACCTCAGCAATTC-------------------------------------G--------TTC---------TTTCGTTCCAGCCTCCTTCTATGCAAGTGAGCCGCGACGTGTTTGCTCATCCACCGCCAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................GACATAATACGGAGCAATAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

GCCAACCTATCCGACGACCTGAGTCGCCTGCCGACTCTGATGCGACGCGCCTACGTCTATGACATAATACGGAGCAATAAGGGGCCTGGTTACTGGGTGGTAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCCAACCTGTCCGACGACCTTGACCGTCTGCCGGCCATTCAGAGACGGGCCTATGTCTATGACATAATTAGGAGCCATAAAGGGCCAGGTTATTGGGTGGTAATGGCCAA-----CAACA---ACACTATAGT----------------------------------------------------------------------------GCACTCCGCAATCATCTCGC----C--------------------------------------------------------------------------------------------A-----------------TGTCATATACAT--TTGACTTGAATGCTGCTGTTC-------------------------------------T----------C---------TGTCGTTTCAGCCGCCGTCCATGCAAGTGAGTAGCGACGTCTTTGCCCATCCGCCACCTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................ATTAGGAGCCATAAAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..CAACCTGTCCGACGACCTTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................ATAAAGGGCCAGGTTATTGGGT................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................AGACGGGCCTATGTCTATGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............CGACCTTGACCGTCTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ACGACCTTGACCGTCTGCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGTCTTTGCCCATCCGC.......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..CAACCTGTCCGACGACCTTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................GACATAATTAGGAGCCATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................GTCTATGACATAATTAGGAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGAGTAGCGACGTCTTTGCCC.............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAAGTGAGTAGCGACGT.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATGCAAGTGAGTAGCG.........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................AGAGACGGGCCTATGTCTATGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCCAACCTGTCCGACGACCTTGACCGTCTGCCGGCAATTCTGAGACGGGCCTATGTCTATGACATAATTAGGAGCCATAAAGGGCCAGGTTATTGGGTGGTAATGGCGAA-----CAACA---ACAAAATAGT----------------------------------------------------------------------------GCACTCCGCAATCATCTCGC----C--------------------------------------------------------------------------------------------A-----------------TGTCACATACAT--TTGACTTGAATGCTGCTGTTC-------------------------------------T----------C---------TGTCGTTTCAGCCGCCGTCCATGCAAGTGAGTAGCGACGTCTTTGCCCATCCGCCACCTGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............GACCTTGACCGTCTGCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
...............GACCTTGACCGTCTGCCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGTGAGTAGCGACGT.....................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGAGTAGCGACGT.....................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCATGCAAGTGAGTAGCGAC.......................	23	1	1.00	1	0	1	0	0	0	0
...AACCTGTCCGACGACCTTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............GACGACCTTGACCGTCTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAGCGACGTCTTTGCCCATC..........	23	1	1.00	1	0	1	0	0	0	0
...................................AATTCTGAGACGGGCCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....CCTGTCCGACGACCTTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCGACGTCTTTGCCC.............	18	1	1.00	1	1	0	0	0	0	0
..................CTTGACCGTCTGCCGGCAATTCTGAGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAGCGACGTCTTTGCC..............	19	1	1.00	1	0	1	0	0	0	0

droWil2

GCCAACCTGTCCGATGACATTGAACGACTGCCTGCCCTGCAGAGAAGGGCCTACGTTTACGACATAATTAGGAGCAATAAGGGGCCCGGCTATTGGGTGGTAATTTTCAA-----ATAT---------------------------------------------------------------------------------------------------------AT----------AGTCA-----------------------------TCAGG--CAGCTGAATCA--------------------------------------TATCCTGCTTACATCAA------------A--TCCGTGTGCC---AATGG----TGCTTTAAAAATCACATCGTGCCACATTTGTGTCATCTTTTTGCATTC---------CTTCATTCCAGCCACCTTCTATGCAAGTGAGCAGCAACGTATTTGCTCATCCGCCACCAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAGCAACGTATTTGCT..............	21	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAGTGAGCAGCAACGTATTTGCT..............	27	1	1.00	1	0	0	0	1	0
..................................................CTACGTTTACGACATAATTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...................................CCTGCAGAGAAGGGCCTACGTTTACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.........................................................................GCAATAAGGGGCCCGGCTATT....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGTGAGCAGCAACGTA....................	20	1	1.00	1	0	0	1	0	0
............................................................GACATAATTAGGAGCAATAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................CGACTGCCTGCCCTGCAGAGAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...........................................................CGACATAATTAGGAGCAATAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
...........................CTGCCTGCCCTGCAGAGAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........................................................................AATAAGGGGCCCGGCTATTGGGT................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................................................TTACGACATAATTAGGAGCAATAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTTCTATGCAAGTGAGCAGCAACGT.....................	28	1	1.00	1	0	1	0	0	0

droVir3

GCCCACCTGGCCGACGATGTTGACAAAATGCCGGCGATGCAGCGACGCGCCTATGTGTATGACATAATTAGAAGCAATAAAGGCCCCGGTTACTGGGTGGTAATGCCATT-----CATAT---AATC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCATCATCATCATCCACATCAT------------------------------------------------------------------G--TTGGCCAGTC---AGTCG----CAATTTAATTATCCTGT-------------------T-----G----C---------TC-TCTTGTAGCCGCCGTGCATGCAGGTGAGCAGCGACGTCTTCGCCCAGCCCCCGCCCGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTGCATGCAGGTGAGC.............................	19	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................TGACAAAATGCCGGCGATGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AAAATGCCGGCGATGCAGCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGTGAGCAGCGACGT.....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................GCGACGCGCCTATGTGTATGACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCGCCCAGCCCCCGCCCGC	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................T-------------CA------------TCA--------------------TCATCATCATCATC...............................................................................................................................................................................................................................	20	20	0.70	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCATC..................................................................................................................................................................................................................................	20	20	0.50	10	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCA--------------------TCATCATCATCATCATC............................................................................................................................................................................................................................	20	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TCATCATCATCATCATCCA.......................................................................................................................................................................................................................	19	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCAT...................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CA------------TCA--------------------TCATCATCATCATCA..............................................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AT-------------CA------------TCA--------------------TCATCATCATCATC...............................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCA--------------------TCATCATCATCATCATCA...........................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................CA--------------------TCATCATCATCATCATCATC.........................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCATCATCATCATCATCA...........................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................C----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCATCATCA..............................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCATCATCATCATCATCATC.........................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................T-------------CA------------TCA--------------------TCATCATCATCA.................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TCATCATCATCATCATCATCC........................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................T-------------CA------------TCA--------------------TCATCATCATCATCATC............................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................ATCATCATCATCATCATCCA.......................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCA--------------------TCATCATCATCATCATCATCC........................................................................................................................................................................................................................	24	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CATCATCATCATCATCATCC........................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCA--------------------TCATCATCATCATCATCATC.........................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TCATCATCATCATCATCC........................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCATCA.................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................T-------------CA------------TCA--------------------TCATCATCATCATCA..............................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CA------------TCA--------------------TCATCATCATCAT................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................T---AATC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATC.....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCATCATCA..............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................A------------TCA--------------------TCATCATCATCATCAT.............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CA------------TCA--------------------TCATCATCATCATC...............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CA------------TCA--------------------TCATCATCATCATCATCA...........................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AT-------------CA------------TCA--------------------TCATCATCATCATCATC............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATC----------------------------------------------------------------------------------AT-------------CA------------TCA--------------------TCATCATCA....................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TCA--------------------TCATCATCATCATCA..............................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCCCACCTATCCGACGAGGTTGAGCAGATGCCGGCAATGCAGCGGCGCGCCTATGTCTATGACATAGTTCGAAGCCATAAAGGCCCCGGTTACTGGGTGGTAATTGCCAA-----TGGAA---AAGA--GACG----------------------------------------------------------------------------GCAGT-GGAAATCATCATGCGAGTCATCCTCATCTTCATGATCA--CTATCATTGTCAATATCACCATCATTATCATTAT------------------------------------------------------------------C--ATTGTTAAAT---AGTTG----C-------TCGTTTTCT-------------------C----------T---------TCTTCTTATAGCCGCCCTGCATGCAGGTGAGCAGCAACGTCTTCGACCAGCCTCCGCCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................GGTTGAGCAGATGCCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCAACGTCTTCGAC..............	19	1	1.00	1	0	0	0	0	0	1
...................................AATGCAGCGGCGCGCCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................GAGCAGATGCCGGCAATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................ATCATTATCATTAT------------------------------------------------------------------C--ATTG........................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0

droGri2

GCAAACTTATCCGACGATGTGGAACACATGCCGGCGATGCAGCGACGCACCTATGTTTATGACATAATTAGAAGCCATAAGAGCCCCGGTTATTGGGTGGTAATTGCCAATTCTTGAACAAGACAAC----------------------------------------------------------------------------------AC-------------------------CCTCA--------------------------------------------TCAGTCACCATA-----------------------CTT---A----T------AT-AAA--TC----AGTTGCAATTTGTAATCGCTGCTGAAA---------------------------------TTTTCTTTTTGTTTTTATTTACTGGTC-TTTTTTAGCCACCCTGCATGCAGGTGAGCAGCGACGTCTTCGCCCAGCCCCCACCCGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................CATGCCGGCGATGCAGCGACGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

dsi_3539

3r:15435386-15435535 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads