ID:

dsi_3537

 Coordinate:

x:16611088-16611319 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [x_16611320_16611685_+]; CDS [x_16611320_16611685_+]; exon [x_16610948_16611087_+]; CDS [x_16610948_16611087_+]; intron [x_16611088_16611319_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAAGAAAACCTGGTGATGCACACAAAAGCACATCCATTCAAAGAAACCCCGCTAGGCTATGCTCTATGTGTGTGTCTAAAAACTTTCTCGTTCGCTTTTCTCGTTCCCTGCTGCGCATTCCTCTCGATAGGCTTTGGTAAGCGTTCGTTAGCCCCTTTCAGTCGACAAATAATACTATTAAGAAGTAAATGCATTATATCATATATGATTTGTTATTTTTTACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
**************************************************..(((((((((((.......((((((((((..((((...((...................))...))))...)))))))))).......)))))...))))))....(((........)))........((((((((....(((.(((....))).))))))....))))).............((((((((((....(((((((...)))))))...))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 GSM343915
embryo
............................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTG........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........ACCAGAATGATGCAGGCTGA................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................CGTTTCCAGGATCAAGGC........................................................................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GCCGAGCACTGAAGTGGAC........... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................TCAAGGTATCTGAAGAAAAAC.......................................................................................................................................................................................................................................................................... 21 3 6 0.50 3 0 0 3 0 0 0 0 0 0 0
.............................................TCAAGGTATCTGAAGAAAA............................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CATTATATCAGCTATGAT................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
....................................TGTCCAGGATGAAGGTA....................................................................................................................................................................................................................................................................................... 17 2 17 0.12 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GAGTACTGAAGTGGA............ 15 1 17 0.12 2 0 0 0 0 2 0 0 0 0 0
....................CAAGCTGAGGATGTCGTTTC.................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0
.......................................CCAGGATGAAGGTAA...................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
...........AGAATGATGCAGGCTGA................................................................................................................................................................................................................................................................................................................ 17 0 12 0.08 1 0 0 0 0 0 0 1 0 0 0
.....................AGGCTGATGAGGGCGTTTT.................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.............................................TGAAGGTAAGAGAAGAAAGC........................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...............CGAAGCAGGCTGAGGAGCC.......................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGTTCAGCTGGTCTTACTACGTCCGACTCCTCCGGCAAAGGTCCTAGTTCCATTCACTTCTTTTGGACCACTACGTGTGTTTTCGTGTAGGTAAGTTTCTTTGGGGCGATCCGATACGAGATACACACACAGATTTTTGAAAGAGCAAGCGAAAAGAGCAAGGGACGACGCGTAAGGAGAGCTATCCGAAACCATTCGCAAGCAATCGGGGAAAGTCAGCTGTTTATTATGATAATTCTTCATTTACGTAATATAGTATATACTAAACAATAAAAAATGGTCCGAGGGCTCCCGCTTTCAGTCGGCTCGTGACTTCACCTGGACAAGTATAG
**************************************************..(((((((((((.......((((((((((..((((...((...................))...))))...)))))))))).......)))))...))))))....(((........)))........((((((((....(((.(((....))).))))))....))))).............((((((((((....(((((((...)))))))...))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................................................................................................CGCTTTCAGTCGGCTC........................ 16 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................................................................................................CCGTTTTCAGTCGGC.......................... 15 1 20 0.20 4 3 0 1
...................................................................CCACTACGTGTGTTCAGGTG..................................................................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0
.............................................................................................................................................................................................................TCGCGGAAAGTCAGCT............................................................................................................... 16 1 6 0.17 1 0 1 0
...................................................................................................................................................................................................................................................................................................CCGTTTTCAGTCGGCGC........................ 17 2 20 0.15 3 3 0 0
................................................................................................................GGTACGAGATACACAC............................................................................................................................................................................................................ 16 1 8 0.13 1 0 1 0
...................................................................CCACTACGTGTGTTCAGGT...................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 2
................................................................................TGTCGTGTAGGTAAG............................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:16611038-16611369 + dsi_3537 CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--AA-AA-------------------------------------CCTG--------G-----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------TTCG-----------------TTAGC----CCCT-TT---CAGTCG-------ACA-AATAAT-----ACTATTAAGAAG------------------------TAAATGCATT---------------------AT---------------ATC---ATAT----------------ATG-----------------------------------------ATTTGTTA----TTTTTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droSec2 scaffold_17:1340652-1340984 + CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--AA-AA-------------------------------------CCTT--------G-----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------TTCG-----------------TTAGC----CCCTTTT---TAGTCG-------ACA-AATGAT-----ACTATTAAGAAG------------------------TAAATGCATT---------------------AT---------------ATA---ATAT----------------ATG-----------------------------------------ATTTGTTA----TTTTTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
dm3 chrX:17497819-17498153 + CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---GTGAA-AA-------------------------------------CCTG--------G-----TGATGCAC----ACG-AAAGC-ACATCCATTCAAG--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGTTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------TTCG-----------------TTAGC----CCCT-TT---CAGTCG-------TCA-AATGAT-----AGCATTAAGAAT------------------------TAAATGCATT---------------------AT---------------ATA---ATAT----------------ATG-----------------------------------------ATTTGCTATTT---TTTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droEre2 scaffold_4690:7835292-7835626 + CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATTAAGGTAAGTGAA---G---A-AA-------------------------------------CCTG--------G-----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCAAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTAGC----CCCTATT---CAGTTG-------ACT-GATAATGTAGAACCAT------------------------CTAAGCGTAAATGCATT---------------------AT---------------ACA---ATTT----------------ACA-------C-------------------------T-----------TTTATTT---TCTT--------GACAGGCTCCCGAGGGCGAAAGTCAGCCAAGCACTGAAGTGGACCTGTTCATATC
droYak3 X:16125579-16125917 + CCAAGTCGACCAGAATGATGCAGGCGGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---C--AAGAA-------------------------------------CCTG--------A-----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTAGC----CCCCTTT---TAGTTG-------ACA-AATAAT-----ACCATTTAGACG------------------------TAAATGCATT---------------------AT---------------ACATTTATAT----------------ACA-------T-------------------------T---TTTG----GTTTTGT---TTTT--------AACAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droEug1 scf7180000409271:566368-566720 + CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCTGTCTCCAGGATCAAGGTAAGTAAT---GGG-A-AA-------------------------------------CCCT--------G-----TGAACCAC----ATA-AAAGC-ACAACCATCCGA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTT-----------AAAGTGTGTTTGTGTGT-----GTGT---GTCTAAAA-------TTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTAT--------C---------------------------------------------------------GATAGGCTTTGGTAAGAG--------------------------------ATCG-----------------TTGGC----CCCTTTA---TAGTTG-------AA--AACAAA-----ACCAA--------------------TTCCCCA-A----CAAACAGG---------------------ATTCGTTTTAACA------T---A--------------------------------------------TTTTTGTATAT-------------------ATT-TCT---GATTAACTAGGCTCCCGAAGGTGAAAGCCAACCGAGCACTGAAGTGGACCTGTTCATATC
droBia1 scf7180000301760:3512674-3513012 + CCAAGTCGACCCGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTGCA---C-G---AA-------------------------------------CCCGGCG-----G-----TGAAGCAC----GT--AAAGC-ACATTCATCCA----------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCCCTCTG---------------CT-CTCTGT-----GTGT---GTCTAACA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----CCCTCTA---TAGTTG-------ACCGAAAGAA-----ACCT------------------------CCTAAG----AAGGC-CT---------------------ATTTACT----------AAC---ATCT----------------ACGT-----------------T-------------------------TCTTGC--AT-TTCC--------GCCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGACCTGTTCATATC
droTak1 scf7180000415210:536467-536693 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTAGT---GTT-A-AG------------------------------CCCCCACCCCG--------G-----TGGTGAACTAACATG-GAAGC-ACAATCATCCAA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTA------------------------------------TGTGTTTTGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCTC------TC---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTTGCGAT-CCCC-CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT-------
droEle1 scf7180000491001:241781-242155 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTGTCCAGGATCAAGGTAGGTACA---GTG---AA-------------------------------------CCCT-------CTTGAG-GGAAGC------GT--ACAGCAACCTCCATCCAAG--------------------------------------------------------------------------------------------------------------------------AAAACCCCGCTAGGCTAT-GCTCTATGCTCGCTCAATGTGTGTGTGCGTGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----ACCTAAA---TA--AAATAGTTGACA-AA---------------------------------------------------CATGGACTCCCCCCTCATAGTTAATACTCGATTTAAGACATT-----GATTT----------------ATA-------T-------------------------T---TA-----TG--TTGT---TCTT--------ACCAGGCTCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTCTTCATATC
droRho1 scf7180000779333:720157-720492 + CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTCTCCAGGATCAAGGTAAGTAGG---CT--A-AG-------------------------------------CCCC--------G-----TGGAGCACT---ACA-AAACC-ACCTCCATCCAA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----CCCTTAA---TCGTTG-------CAA-AATAAA-----ACCCT------------------------CTT-T----AAAGTATT---------------------ATTTATTATAAAA------T---G-CT-----------------------------------TATTC------------ATA--------TA--ATAT---TCTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droFic1 scf7180000454077:702064-702405 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTAAGTGAT---ATGAA-AA-------------------------------------CCCC--------T-----CAAATCAC----ATA-GAACC-ACATCCATCCAA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTCTATT---------------G-TGTGTGT-----TTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----CCC------------G-------ACT--AT---------------AGAAT-TAGTATTAGA--TCCCCTA-G----AAGGCACT---------------------ATTTATTTTTGAA------C---A-CT--------------------------------------------TTGTTCTT-------------------ATTTTTC--------ATCAGGCCCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTGTTCATATC
droKik1 scf7180000302230:550784-551147 - CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTATGTGCAAA-ATA---AG-------------------------------------CCCTAAATCTA------------CAG----ATCAAGAGC-CCCTCC----GA----------------------------------------------------------------------------------------------------------------------------CAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTCTC-TGTCTAAAAA-----TATTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCCTGCTGCTGCGCATTCCTCTATCACTCTG---------------------------------------------------------TATAGGCTTTGGTAAGAG--------------------------------ATCGATCGATCGATCGTTGTGTTGGC----CCCCA-------------------------------------TTAAGAACCTAGTGCCAGATATCCCCC---------G--------------------------------------AAATT-C---GAGTC----------------CTTT-----------------TTCAT----------GTTTACCT----TCCGTTT---CTTA--------ACCAGGCTCCCGAGGGCGAGAGCCAGCCGAGCACCGAAGTGGACCTGTTCATATC
droAna3 scaffold_13248:2925531-2925809 - CCAAGTCGACGCGGATGATGCAGGCCGAGGAGGCTGTCTCCCGGATAAAGGTAATTGAC---C--AGGATCCAAGTCATATATGCAACCATTATGCCATGCCACCAAC----------------AG---T-------C----------------------------------------------------------------------------CCCAATCTCCCAATCCATCTATATCCCAACTCA-----------TATCCACTCATATCCCGGTATCCCGGAATCCCGGTAGGCTAT-GCTC-----------------------TATGT-----GTTT---GTCTAAAAAAAGAATATTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGGA-----------------------------------G-----------------TTGGC----CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396429:92025-92252 + CCAAGTCCACGCGAATGATGCAGGCCGAGGAGGCCGTTTCCCGGATAAAGGTAATTACC---AGG---ATCCAAGCCA-----------------------------------------------GGGATC------CC--CCACT------------------------------------------------------------------------ATCCCCCACT-------------------------CTATCTATCCATTCATATCCCGGTATCC-TAATCCCCGGTAGGCTAT-GCTC-----------------------TATGT-----GTTT---GTCTAAAAAAAGAATATTTCTTG-TTCGCTTTTTTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:7681017-7681373 - CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCGTG---AC-------------------------------------CCCCGCACCGA------------CAC----GTAGTGGC-----CCCATCCTAC-----------------------------------------------------------------CCT------------------------------------------------------ACCTCATTGCTAGGCTATTGCTATGTG---------------CT-AAATGT-----GTGTCGTGTCTAAA--------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCCTT--------T---------------------------------------------------------GATAGGCTTTGGTAAGAG--------------------------------ATTGTTCGATTG---------TTAAT---CCCCTC-TCCATGGCTG-------TCCGA---------------------------------AATCAGCA---------G--------------------------------------ATACT-----GATCT----------------CTGT-----------------TTTCTGTTTGTATTC-------------------ATT-TCCGTCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATC
droPer2 scaffold_13:875299-875650 + CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCGTG---AC-------------------------------------CCCCGCACCGA------------CAC----GTAGTGGC-----CCCATCCTA----------------------------------------------------------------------------------------------------------------------------CCTCATTGCTAGGCTATTGCTGTGTG---------------CT-AAATGT-----GTGTCGTGTCTAAA--------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTTT--------T---------------------------------------------------------GATAGGCTTTGGTAAGAG--------------------------------ATTGTTCGATTG---------TTAAT---CCCCTC-TCCATGGCTG-------TCCGA---------------------------------AATCAGCA---------G--------------------------------------ATACT-----GATCT----------------CTGT-----------------TTTCTGTTTGTATTC-------------------ATT-TCCATCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATC
droWil2 scf2_1100000004909:8661325-8661713 + CAAAATCCACACGTATGATGCAGGCCGAGGAGGCAGTCTCTCGCATTAAGGTAAGTTCA---T--AT-AA-------------------------------------TTTG-ATTCGATTCGAA-TGAATC------CC--ACAAAAA---------------------------------------------------------------------------------------------------------------------------------------CACCTTAGCTAGGCTAG-CTTCCCCCATAACTT--------A-CATATAT-----GTAT---GTCT-----------------CG-G-CTTTTTTCTCTTG----CC--------------------------------------------ACCCT---TGCTGCTCATTCCTCACTCTGTCTGTCTCTCAAAATCAAAACAAAAAAAAAAAAAACAAAACAAAAAACCAAATAAAACAAAAATAGGCTTTGGTAAGCAT-------------AA----------------TTCT-----------------TTGG-----------------GTGA-------ACA-AATCGT-----------------------------------------------------------------------------------------------TTCA----------------TTGTTTTTTATAAACTAATTTTATAA----------CTT--------TA-CTC---TTCGCT--------ACCAGGCGCCAGAGGGTGAAAGTCAACCTAGCACTGAGGTCGATCTATTCATATC
droVir3 scaffold_12970:5639625-5639988 - dvi_13241 CCAAGTCGACACGCATGATGCAGGCCGAGGAGGCCGTATCTCGCATAAAGGTGTGTACC---TTC---AG-------------------------------------CTCT--------G-----TGT---------------------------------CAATATATGCAGTTACGCTCCATTTAGAA-----TATGCTCGGTAAATT---------------------------------------------------------------------------------------GTT-GCTC-----------------------TTTGT--------------CTATAAT------G-----CGTCTTGCTTTTCTCGTCCATGCCCTTCAAAAAAATAAA-----------------------ATAAAAACCCA---TGCTGCTCACTCCTCGATA----TA---------------------------------------------------------TTTAGGCTTTGGTAAGCAACCAATACAAAATAAACACCTAAAAGCCAC--AACT-----------------TGGGT-------------------------------------------CTAGTCAGAGG------------------------TAAACTTATT---------------------GG---------------------ATTT----------------TTG-----------------------------------------TTGTGTTTC---TTTGTT--------GTCAGGCGCCAGAAGGCGAAAGTCAGCCAAGCACCGAGGTGGATCTGTTCATATC
droMoj3 scaffold_6473:16017874-16018231 + CCAAGTCGACGCGCATGATGCAAGCCGAGGAGGCCGTCTCCCGCATCAAGGTATGTGCC---CCT---AG-------------------------------------CTCA--------T-----TGA---------------------------------CCTCATGTCCAGTTGCGTCCCATTTAGCA-----TATGCTTGGTCTATT-------------------------------------------------------------------------------------------G------------------------T-CGCCT-----CTTT---GTCTATAAT------GCAT-----CTCGCTTTTCTCGCCCACACCC---ACACCCCTAAA-----------------------TT---AACCCA---TGCTGCGTAATCCTCGATA----TC---------------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACACAAATCAAAA----------------T-----------------------------------------------------------------------------------TTTAGA--TCA-------------CAATT---------------------ATTTGTTTTGCAT------C---A-CGTTTGCAAGTGACTGAC-GA-------------------G-----------------ACGG----TTTCA---TTTGTT--------GCCAGGCGCCAGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGATCTGTTCATATC
droGri2 scaffold_15203:7702504-7702930 + CGAAATCAACCCGTATGATGCAGGCCGAGGAGGCCGTTTCCCGCATAAAGGTGTGTAGA---TCG---AG-------------------------------------CTC---------------------------------------ATCAGTTCAGTTCAATTGTTTCAGTTGCGCTCC-TTTAGCAAAAATTATGCTCGTTTAACTGTGGCTCTGTCTCTCTCTCTCTCTCTCTCACA---CACACACACTATCTCTCTATTC---------------------------------------------------------------------------------------------GTTT-----CTCGC-TTTCTCGTCCATTCCC--CAATAAAACAAATAAAAAAATAAACAAAAATATTAACAACAACCCA---TGCTGCTCACTCCTTGATA----TG---------------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACAGAAACCTAACACTTCGAAT----TGAGTG-----------------TTGTC----CCAG-TT---CTGTGA-------ACA-GTTT------------------G------------------------TAAATG---------------------------------------------------------------------TT-------------------G-----------------TTTG----TTTGTTT---TGTT--------GACAGGCGCCCGAAGGCGAAAGTCAGCCCAGCACCGAGGTGGATCTGTTCATATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--AA-AA-------------------------------------CCTG--------G-----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------TTCG-----------------TTAGC----CCCT-TT---CAGTCG-------ACA-AATAAT-----ACTATTAAGAAG------------------------TAAATGCATT---------------------AT---------------ATC---ATAT----------------ATG-----------------------------------------ATTTGTTA----TTTTTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTG........2411.00101000000000000000
........ACCAGAATGATGCAGGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..................................CGTTTCCAGGATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGCACTGAAGTGGAC...........1911.00100100000000000000
...........AGAATGATGCAGGCTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.08100000000001000000
droSec2
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---G--AA-AA-------------------------------------CCTT--------G-----TGATGCAC----ACA-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------TTCG-----------------TTAGC----CCCTTTT---TAGTCG-------ACA-AATGAT-----ACTATTAAGAAG------------------------TAAATGCATT---------------------AT---------------ATA---ATAT----------------ATG-----------------------------------------ATTTGTTA----TTTTTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCGAAAGTCAGCCGAGCACTGAA.................2811.0010100
.CAAGTCGACCAGAATGATGCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------------ATG-----------------------------------------ATTTGTTA----TTTTTC--------.......................................................1930.3311000
dm3
CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---GTGAA-AA-------------------------------------CCTG--------G-----TGATGCAC----ACG-AAAGC-ACATCCATTCAAG--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGTTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------TTCG-----------------TTAGC----CCCT-TT---CAGTCG-------TCA-AATGAT-----AGCATTAAGAAT------------------------TAAATGCATT---------------------AT---------------ATA---ATAT----------------ATG-----------------------------------------ATTTGCTATTT---TTTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGCCGAGCACTGAAGTGGA............2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGGAGGCCGTTTCCAGGATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTGTTC.....2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAAGTCGACCAGAATGATGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGAATGATGCAGGCCGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGGACCTGTTCATT..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................C-ACATCCATTCAAG--------------------------------------------------------------------------------------------------------------------------GAAACCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................ACG-AAAGC-ACATCCATTCAAG--------------------------------------------------------------------------------------------------------------------------GAAACCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCATT---------------------AT---------------ATA---ATAT----------------ATG-----------------------------------------A................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGAATGATGCAGGCCGAGGAGGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGCGAAAGTCAGCCGAGCACT....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................GATGCAGGCCGAGGAGGCCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...AGTCGACCAGAATGATGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGAGCACTGAAGTGGACCTGT.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGTGGACCTGTTCATAT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCG-------TCA-AATGAT-----AGCATTAAGA.................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCCGAGCACTGAAGTGGACCT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCCGAGCACTGAAGTGGACCT.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGCACTGAAGTGGACCT.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CCAGAATGATGCAGGCCGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGAATGATGCAGGCCGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........CAGAATGATGCAGGCCGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCGACCAGAATGATGCAGGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AATGATGCAGGCCGAGGAGGCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACTGAAGTGGACCTGTTCA....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GAATGATGCAGGCCGAGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCAGCCGAGCACTGACA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGTGAA---GTGAA-AA-------------------------------------CCTG--------G-----TGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAGTGGACCTGTTCATC..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCCGTTTCCAGGATCAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCAAGTCGACCAGAATGATGCAGGCTGAGGAGGCCGTTTCCAGGATTAAGGTAAGTGAA---G---A-AA-------------------------------------CCTG--------G-----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCAAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTAGC----CCCTATT---CAGTTG-------ACT-GATAATGTAGAACCAT------------------------CTAAGCGTAAATGCATT---------------------AT---------------ACA---ATTT----------------ACA-------C-------------------------T-----------TTTATTT---TCTT--------GACAGGCTCCCGAGGGCGAAAGTCAGCCAAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................GCAGGCTGAGGAGGCCGTTTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...AGTCGACCAGAATGATGCAGGCTGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001
..........................GAGGAGGCCGTTTCCAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCGAGGGCGAAAGTC...............................1911.0011000000
..........CAGAATGATGCAGGCTGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
droYak3
CCAAGTCGACCAGAATGATGCAGGCGGAGGAGGCCGTTTCCAGGATCAAGGTAAGTGAA---C--AAGAA-------------------------------------CCTG--------A-----TGATGCAC----ATG-AAAGC-ACATCCATTCAAA--------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTAGC----CCCCTTT---TAGTTG-------ACA-AATAAT-----ACCATTTAGACG------------------------TAAATGCATT---------------------AT---------------ACATTTATAT----------------ACA-------T-------------------------T---TTTG----GTTTTGT---TTTT--------AACAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................AGTGAA---C--AAGAA-------------------------------------CCTG--------A-----TGATGCAC----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
CCAAGTCGACCAGAATGATGCAGGCCGAGGAGGCTGTCTCCAGGATCAAGGTAAGTAAT---GGG-A-AA-------------------------------------CCCT--------G-----TGAACCAC----ATA-AAAGC-ACAACCATCCGA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTT-----------AAAGTGTGTTTGTGTGT-----GTGT---GTCTAAAA-------TTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTAT--------C---------------------------------------------------------GATAGGCTTTGGTAAGAG--------------------------------ATCG-----------------TTGGC----CCCTTTA---TAGTTG-------AA--AACAAA-----ACCAA--------------------TTCCCCA-A----CAAACAGG---------------------ATTCGTTTTAACA------T---A--------------------------------------------TTTTTGTATAT-------------------ATT-TCT---GATTAACTAGGCTCCCGAAGGTGAAAGCCAACCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droBia1
CCAAGTCGACCCGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTGCA---C-G---AA-------------------------------------CCCGGCG-----G-----TGAAGCAC----GT--AAAGC-ACATTCATCCA----------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCCCTCTG---------------CT-CTCTGT-----GTGT---GTCTAACA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----CCCTCTA---TAGTTG-------ACCGAAAGAA-----ACCT------------------------CCTAAG----AAGGC-CT---------------------ATTTACT----------AAC---ATCT----------------ACGT-----------------T-------------------------TCTTGC--AT-TTCC--------GCCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droTak1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTGAGTAGT---GTT-A-AG------------------------------CCCCCACCCCG--------G-----TGGTGAACTAACATG-GAAGC-ACAATCATCCAA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTA------------------------------------TGTGTTTTGTGT---GTCTAAAAA------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCTC------TC---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTTGCGAT-CCCC-CT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGT-------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTGTCCAGGATCAAGGTAGGTACA---GTG---AA-------------------------------------CCCT-------CTTGAG-GGAAGC------GT--ACAGCAACCTCCATCCAAG--------------------------------------------------------------------------------------------------------------------------AAAACCCCGCTAGGCTAT-GCTCTATGCTCGCTCAATGTGTGTGTGCGTGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----ACCTAAA---TA--AAATAGTTGACA-AA---------------------------------------------------CATGGACTCCCCCCTCATAGTTAATACTCGATTTAAGACATT-----GATTT----------------ATA-------T-------------------------T---TA-----TG--TTGT---TCTT--------ACCAGGCTCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTCTTCATATCSizeHit CountTotal NormTotal
No Reads
droRho1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCGGTCTCCAGGATCAAGGTAAGTAGG---CT--A-AG-------------------------------------CCCC--------G-----TGGAGCACT---ACA-AAACC-ACCTCCATCCAA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----CCCTTAA---TCGTTG-------CAA-AATAAA-----ACCCT------------------------CTT-T----AAAGTATT---------------------ATTTATTATAAAA------T---G-CT-----------------------------------TATTC------------ATA--------TA--ATAT---TCTT--------ACCAGGCTCCCGAGGGCGAAAGTCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droFic1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTAAGTGAT---ATGAA-AA-------------------------------------CCCC--------T-----CAAATCAC----ATA-GAACC-ACATCCATCCAA---------------------------------------------------------------------------------------------------------------------------GAAACCCCGCTAGGCTAT-GCTCTATT---------------G-TGTGTGT-----TTGT---GTCTAAAA-------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGCG--------------------------------ATCG-----------------TTGGC----CCC------------G-------ACT--AT---------------AGAAT-TAGTATTAGA--TCCCCTA-G----AAGGCACT---------------------ATTTATTTTTGAA------C---A-CT--------------------------------------------TTGTTCTT-------------------ATTTTTC--------ATCAGGCCCCCGAGGGCGAAAGCCAGCCGAGCACTGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droKik1
CCAAGTCGACCAGGATGATGCAGGCCGAGGAGGCCGTCTCCAGGATCAAGGTATGTGCAAA-ATA---AG-------------------------------------CCCTAAATCTA------------CAG----ATCAAGAGC-CCCTCC----GA----------------------------------------------------------------------------------------------------------------------------CAACCCCGCTAGGCTAT-GCTC-----------------------TATGT-----GTCTC-TGTCTAAAAA-----TATTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCCTGCTGCTGCGCATTCCTCTATCACTCTG---------------------------------------------------------TATAGGCTTTGGTAAGAG--------------------------------ATCGATCGATCGATCGTTGTGTTGGC----CCCCA-------------------------------------TTAAGAACCTAGTGCCAGATATCCCCC---------G--------------------------------------AAATT-C---GAGTC----------------CTTT-----------------TTCAT----------GTTTACCT----TCCGTTT---CTTA--------ACCAGGCTCCCGAGGGCGAGAGCCAGCCGAGCACCGAAGTGGACCTGTTCATATCSizeHit CountTotal NormTotal
No Reads
droAna3
CCAAGTCGACGCGGATGATGCAGGCCGAGGAGGCTGTCTCCCGGATAAAGGTAATTGAC---C--AGGATCCAAGTCATATATGCAACCATTATGCCATGCCACCAAC----------------AG---T-------C----------------------------------------------------------------------------CCCAATCTCCCAATCCATCTATATCCCAACTCA-----------TATCCACTCATATCCCGGTATCCCGGAATCCCGGTAGGCTAT-GCTC-----------------------TATGT-----GTTT---GTCTAAAAAAAGAATATTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAGGA-----------------------------------G-----------------TTGGC----CC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......GACGCGGATGATGCAGGCCGAGGAGGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............GATGATGCAGGCCGAGGAGGCTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....GTCGACGCGGATGATGCAGGCCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.501000001
CCAAGTCGACGCGGATGATGCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501010000
droBip1
CCAAGTCCACGCGAATGATGCAGGCCGAGGAGGCCGTTTCCCGGATAAAGGTAATTACC---AGG---ATCCAAGCCA-----------------------------------------------GGGATC------CC--CCACT------------------------------------------------------------------------ATCCCCCACT-------------------------CTATCTATCCATTCATATCCCGGTATCC-TAATCCCCGGTAGGCTAT-GCTC-----------------------TATGT-----GTTT---GTCTAAAAAAAGAATATTTCTTG-TTCGCTTTTTTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTCT--------C---------------------------------------------------------GATAGGCTTTGGTAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCGTG---AC-------------------------------------CCCCGCACCGA------------CAC----GTAGTGGC-----CCCATCCTAC-----------------------------------------------------------------CCT------------------------------------------------------ACCTCATTGCTAGGCTATTGCTATGTG---------------CT-AAATGT-----GTGTCGTGTCTAAA--------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCCTT--------T---------------------------------------------------------GATAGGCTTTGGTAAGAG--------------------------------ATTGTTCGATTG---------TTAAT---CCCCTC-TCCATGGCTG-------TCCGA---------------------------------AATCAGCA---------G--------------------------------------ATACT-----GATCT----------------CTGT-----------------TTTCTGTTTGTATTC-------------------ATT-TCCGTCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAGCACGGAGGTGGATCTGTT......2511.0010010000000
.......GACGCGAATGATGCAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCACGGAGGTGGATCTGTTCA....2311.0010000010000
droPer2
CCAAGTCGACGCGAATGATGCAGGCCGAAGAGGCTGTGTCCCGGATCAAGGTGAGTGTAACCGTG---AC-------------------------------------CCCCGCACCGA------------CAC----GTAGTGGC-----CCCATCCTA----------------------------------------------------------------------------------------------------------------------------CCTCATTGCTAGGCTATTGCTGTGTG---------------CT-AAATGT-----GTGTCGTGTCTAAA--------CTTTCTCG-TTCGCTTTTCTCGTT----------------------------------------------------CCC---TGCTGCGCATTCCTTT--------T---------------------------------------------------------GATAGGCTTTGGTAAGAG--------------------------------ATTGTTCGATTG---------TTAAT---CCCCTC-TCCATGGCTG-------TCCGA---------------------------------AATCAGCA---------G--------------------------------------ATACT-----GATCT----------------CTGT-----------------TTTCTGTTTGTATTC-------------------ATT-TCCATCGTCCATGTAGGCACCCGAGGGCGAGAGCCAGCCTAGCACGGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCCGAGGGCGAGAGC................................1811.001000001
droWil2
CAAAATCCACACGTATGATGCAGGCCGAGGAGGCAGTCTCTCGCATTAAGGTAAGTTCA---T--AT-AA-------------------------------------TTTG-ATTCGATTCGAA-TGAATC------CC--ACAAAAA---------------------------------------------------------------------------------------------------------------------------------------CACCTTAGCTAGGCTAG-CTTCCCCCATAACTT--------A-CATATAT-----GTAT---GTCT-----------------CG-G-CTTTTTTCTCTTG----CC--------------------------------------------ACCCT---TGCTGCTCATTCCTCACTCTGTCTGTCTCTCAAAATCAAAACAAAAAAAAAAAAAACAAAACAAAAAACCAAATAAAACAAAAATAGGCTTTGGTAAGCAT-------------AA----------------TTCT-----------------TTGG-----------------GTGA-------ACA-AATCGT-----------------------------------------------------------------------------------------------TTCA----------------TTGTTTTTTATAAACTAATTTTATAA----------CTT--------TA-CTC---TTCGCT--------ACCAGGCGCCAGAGGGTGAAAGTCAACCTAGCACTGAGGTCGATCTATTCATATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................AGGCCGAGGAGGCAGTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...........CGTATGATGCAGGCCGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTGAGGTCGATCTATTCATAT.2511.00101000
.......CACACGTATGATGCAGGCCGAGGAGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTCAACCTAGCACTGAGGTC..............2411.00100010
droVir3
CCAAGTCGACACGCATGATGCAGGCCGAGGAGGCCGTATCTCGCATAAAGGTGTGTACC---TTC---AG-------------------------------------CTCT--------G-----TGT---------------------------------CAATATATGCAGTTACGCTCCATTTAGAA-----TATGCTCGGTAAATT---------------------------------------------------------------------------------------GTT-GCTC-----------------------TTTGT--------------CTATAAT------G-----CGTCTTGCTTTTCTCGTCCATGCCCTTCAAAAAAATAAA-----------------------ATAAAAACCCA---TGCTGCTCACTCCTCGATA----TA---------------------------------------------------------TTTAGGCTTTGGTAAGCAACCAATACAAAATAAACACCTAAAAGCCAC--AACT-----------------TGGGT-------------------------------------------CTAGTCAGAGG------------------------TAAACTTATT---------------------GG---------------------ATTT----------------TTG-----------------------------------------TTGTGTTTC---TTTGTT--------GTCAGGCGCCAGAAGGCGAAAGTCAGCCAAGCACCGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACCGAGGTGGATCTGTT......2111.001000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGAGGTGGATCTGTT......1911.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCACCGAGGTGGATC..........2011.001000000000000000000001000000000000000000000000000000000000000000
...............TGATGCAGGCCGAGGAGGCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000010000000000000000000000000000000000000000
droMoj3
CCAAGTCGACGCGCATGATGCAAGCCGAGGAGGCCGTCTCCCGCATCAAGGTATGTGCC---CCT---AG-------------------------------------CTCA--------T-----TGA---------------------------------CCTCATGTCCAGTTGCGTCCCATTTAGCA-----TATGCTTGGTCTATT-------------------------------------------------------------------------------------------G------------------------T-CGCCT-----CTTT---GTCTATAAT------GCAT-----CTCGCTTTTCTCGCCCACACCC---ACACCCCTAAA-----------------------TT---AACCCA---TGCTGCGTAATCCTCGATA----TC---------------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACACAAATCAAAA----------------T-----------------------------------------------------------------------------------TTTAGA--TCA-------------CAATT---------------------ATTTGTTTTGCAT------C---A-CGTTTGCAAGTGACTGAC-GA-------------------G-----------------ACGG----TTTCA---TTTGTT--------GCCAGGCGCCAGAGGGCGAAAGTCAGCCGAGCACCGAAGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................CCATTTAGCA-----TATGCTTGGTCTATT-------------------------------------------------------------------------------------------G------------------------T-CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGGCGAAAGTCAGCCGAGCACCGA..................2811.001000001
droGri2
CGAAATCAACCCGTATGATGCAGGCCGAGGAGGCCGTTTCCCGCATAAAGGTGTGTAGA---TCG---AG-------------------------------------CTC---------------------------------------ATCAGTTCAGTTCAATTGTTTCAGTTGCGCTCC-TTTAGCAAAAATTATGCTCGTTTAACTGTGGCTCTGTCTCTCTCTCTCTCTCTCTCACA---CACACACACTATCTCTCTATTC---------------------------------------------------------------------------------------------GTTT-----CTCGC-TTTCTCGTCCATTCCC--CAATAAAACAAATAAAAAAATAAACAAAAATATTAACAACAACCCA---TGCTGCTCACTCCTTGATA----TG---------------------------------------------------------TTTAGGCTTTGGTAAGCAACAAACAGAAACCTAACACTTCGAAT----TGAGTG-----------------TTGTC----CCAG-TT---CTGTGA-------ACA-GTTT------------------G------------------------TAAATG---------------------------------------------------------------------TT-------------------G-----------------TTTG----TTTGTTT---TGTT--------GACAGGCGCCCGAAGGCGAAAGTCAGCCCAGCACCGAGGTGGATCTGTTCATATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........CCCGTATGATGCAGGCCGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/19/2015 at 05:16 PM