ID:

dsi_353

 Coordinate:

node_59228:694-750 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.3 -9.3 -9.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy12_LTRLTRGypsy+
mature
  1. node_103022:143-167 -
  2. node_24567:20-44 +
  3. node_69880:3052-3076 +
  4. dsi_353  node_59228:725-749 +
star

Sense Strand Reads

CAGCCAATTGAAATATAAAGAGAAAAAGAAAAAATCTAACCGAATTTATTTGTGGCTCTCTCTCAAACAGAATTAATTTTTTTTCTCGTTAAAGATTCGTTATAATAAACTCTCAAAGAAAAAAAAATAAATAAAATTAATGATTCACAGAACGAGA
***********************************((....((.((((((.(((((....(((..(((((((..........)))).)))..)))...))))))))))).))....))...************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 M025
embryo
 SRR902009
testis
 M024
male body		 M023
head
.................................................................................TTTCTCGTTAAAGATTCGTTATAAT................................................... 25 0 4 143.25 573 215 6 114 100 138 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATA.................................................. 26 0 4 22.75 91 35 7 21 13 14 0 1 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAATT............................................................................... 28 0 1 21.00 21 9 3 7 2 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAA.................................................... 24 0 4 16.50 66 18 7 11 15 15 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATA..................................................... 23 0 4 14.00 56 16 3 7 16 14 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAAT................................................................................ 27 0 1 12.00 12 5 4 1 0 2 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAAT................................................... 25 1 4 11.75 47 23 0 0 23 1 0 0 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCAAACAGAAT.................................................................................... 27 0 1 11.00 11 0 10 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................TAAAATTAATGATTCACAGAACGAGA 26 0 4 9.25 37 16 0 14 3 4 0 0 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCAAACAGAA..................................................................................... 26 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTA.................................................................................. 25 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATAAA................................................ 28 0 4 5.25 21 11 0 5 0 5 0 0 0 0 0 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAATTAAT................................................................................ 28 0 1 5.00 5 1 1 2 1 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAATTTT............................................................................. 30 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAACCGA.................................................................................................................. 26 0 1 4.00 4 1 1 0 1 0 0 1 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCAAACAGAATA................................................................................... 28 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
....................................................TGGCTCTCTCTCAAACAGAATTAATT............................................................................... 26 0 2 3.50 7 2 0 2 3 0 0 0 0 0 0 0 0
.............................................TTATTTGTGGCTCTCTCTCAAACAGAAT.................................................................................... 28 0 1 3.00 3 0 2 0 0 0 0 0 0 0 1 0 0
.................AAGAGAAAAAGAAAAAATCTAACC.................................................................................................................... 24 0 1 3.00 3 0 0 0 0 1 2 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAATA.................................................. 26 1 4 3.00 12 8 0 0 4 0 0 0 0 0 0 0 0
............................................TTTATTTGTGGCTCTCTCTCAAACAGAA..................................................................................... 28 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.............................................TTATTTGTGGCTCTCTCTCAAACAGAA..................................................................................... 27 0 1 3.00 3 0 2 0 0 0 0 0 0 1 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATA..................................................... 23 1 4 2.50 10 5 0 0 5 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATAA................................................. 27 0 4 2.50 10 5 1 2 1 1 0 0 0 0 0 0 0
.......................................................................................................................................ATTAATGATTCACAGAACG... 19 0 4 2.25 9 0 0 0 0 0 0 0 9 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAACCG................................................................................................................... 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
................................................TTTGTGGCTCTCTCTCAAACAGAAT.................................................................................... 25 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCAAACAGAAAA................................................................................... 28 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAAC..................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.AGCCAATTGAAATATAAATAGAAAAAGA................................................................................................................................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAATTAATT............................................................................... 29 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAAT.................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATAAATA............................................................................... 28 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATAAATT............................................................................... 28 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAA..................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAACCGAAT................................................................................................................ 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAATTT.............................................................................. 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAA................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAATGATTCACAGAACGAGA 20 0 4 1.75 7 3 0 0 2 2 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAA.................................................... 24 1 4 1.75 7 6 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................TAAAATTAATGATTCACAGAAAGAGA 26 1 4 1.50 6 6 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTAT...................................................... 22 0 4 1.50 6 1 0 1 4 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATT.................................................. 26 1 4 1.25 5 3 0 0 1 1 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAAA................................................... 25 1 4 1.25 5 3 2 0 0 0 0 0 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCAAACAGAAA.................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
CAGCCAATTGAAATATAAATAGAAAAAGA................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................TTATTTGTGGCTCTCTCTCAAACAG....................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................TTTGTGGCTCTCTCTCAAACAGAATTAA................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCA............................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................TTTGTGGCTCTCTCTCAAACAGAATTAT................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...CCAATTGATATATAAAGAGAAAAAGAA............................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAAGCTAACCGAA................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................TTTGTGGCTCTCTCTCAAACAGAATA................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TAATTTTTTTTCTCGTTAAAGATT............................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCT........................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAACAT................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................TGGCTCTCTCTCAAACAGAATTAATTT.............................................................................. 27 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAATA............................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAATT................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................TTTGTGGCTCTCTCTCAAACAGAATT................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................ATTTATTTGTGGCTCTCTCTCAAAC......................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAACCGAAA................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAATAAATT............................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TATAATAAACTCTCAAAGAAAAAAAAAA............................. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTATT................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATAAAT................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATTAAA................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TGTGGCTCTCTCTCAAACAGAATAAA................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAAATAAAATTAATGATTCACAGAACGAGA 30 0 4 1.00 4 3 0 1 0 0 0 0 0 0 0 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAATTA.................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................TTGTGGCTCTCTCTCAAACAGAATTAAA................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................TATTTGTGGCTCTCTCTCAAACAGA...................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAATCTAACCGAA................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................TTTATTTGTGGCTCTCTCTCAAACAGA...................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATAT................................................. 27 1 4 0.75 3 1 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................ATAAAATTAATGATTCACAGAACGAGA 27 0 4 0.75 3 1 0 1 1 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTA....................................................... 21 0 4 0.75 3 0 0 1 0 2 0 0 0 0 0 0 0
.................................................................................TTGCTCGTTAAAGATTCGTTATAAT................................................... 25 1 4 0.75 3 2 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAT.................................................... 24 1 4 0.75 3 2 1 0 0 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAAT.......................................................................................................................... 18 0 3 0.67 2 0 0 0 0 0 2 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATAAT................................................ 28 1 4 0.50 2 0 0 1 0 1 0 0 0 0 0 0 0
....................................................TGGCTCTCTCTCAAACAGAATTAATTTT............................................................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TCTCTCTCAAACAGAATTAATTTT............................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTTTTTTCTCGTTAAAGATTCGTTA....................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCGTTATAATAAACTCTCAAAGAAA.................................... 26 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................TCGAACCGAATTTATTTGTGGCTCTC................................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................CCGAATTTATTTGTGGCTCTC................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GGTGGCTCTCTCTCAAACAGAATTAA................................................................................. 26 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................TGGCTCTCTCTCAAACAGAATTAA................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................GTTCTCGTTAAAGATTCGTTATAA.................................................... 24 1 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAAAT.................................................. 26 2 4 0.50 2 0 0 0 1 1 0 0 0 0 0 0 0
.................................................................................ATTCTCGTTAAAGATTCGTTATAAT................................................... 25 1 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TTTTTCTCGTTAAAGATTCGTTATAATA.................................................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCGTTATAATAAACTCTCAAAGA...................................... 24 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................AAGAAAAAATCTAACCGAATTTACT........................................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTAT...................................................... 22 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTCTCTCTCAAACAGAATAAA................................................................................. 21 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CTCGGAAAAAAAAAAATAAATAAAAT.................... 26 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTTTCTCGTTAAAGATTCGTTATAATA.................................................. 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................TTCTCGTTAAAGATTCGTTATAATA.................................................. 25 0 4 0.50 2 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................GGCTCTCTCTCAAACAGAATTAATTT.............................................................................. 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATTT................................................. 27 2 4 0.50 2 0 0 1 1 0 0 0 0 0 0 0 0
.................................................TGGTGGCTCTCTCTCAAACAGAATTA.................................................................................. 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTCGTTATAATAAACTCTCAAAGAA..................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAATAA................................................. 27 1 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................GTGGCTCTCTCTCAAACAGAATTAATT............................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..GCCAATTGAAATATAAAGAGA...................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTAAAGATTCGTTATAATAAAC............................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AATTAATGATTCACAGAACGAGA 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTCAAAGATTCGTTATAATT.................................................. 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTCTCGTTAAAGATTCGTTATAA.................................................... 24 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TAAAATTAATGATTCACAGAACGAG. 25 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTAATGATTCACAGAACGAG. 20 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAATAAA................................................ 28 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAAAA........................................................................................................................... 17 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................TAAATAAAATTAATGATTCACAGAAC.... 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAATAAC................................................ 28 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATGAT................................................... 25 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATATT................................................ 28 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTCTTCGTTAAAGATTCGTTATAAT................................................... 25 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAAATAAAATTAATGATTCACAGAA..... 25 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAAC................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAAATAAAATTAATGATTCACAGAAAGA.. 28 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GAAAATTAATGATTCACAGAACGAGA 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAAATAAAATTAATGATTCACAGA...... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAATTAATGATTCACAGAACGAGA 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATAATTC................................................. 27 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TAAAATTAATGATTCACAGAAAGAGT 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AATAAAATTAATGATTCACAGAACGAGA 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTGTAAG................................................... 25 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTGAAGATTCGTTATAATA.................................................. 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAGAGATTCGTTATA..................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAATGATTCACAGAACGAG. 19 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTTTCGTTAAAGATTCGTTATAAT................................................... 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAACC.................................................. 26 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTAAAAGATTCGTTATAAT................................................... 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TTCTCGTTAAAGATTCGTTATAATAA................................................. 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAAATAAAATTAATGATTCACAGAACGA.. 28 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TTCTCGTTAAAGATTCGGTATAATA.................................................. 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGTTATATT................................................... 25 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................CTTCTCGTTAAAGATTCGTTATAA.................................................... 24 1 8 0.25 2 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAAC................................................... 25 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................AATAAAATTAATGATTCACAGAACGAG. 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTAATGATTCACAGAAAGAGA 21 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TCGTTAAAGATTCGTTATAAT................................................... 21 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................GTTCTCGTTAAAGATTCGTTATAATA.................................................. 26 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTCTCGTTAAAGATTCGTTATAATAA................................................. 27 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................TTCGTTAAAGATTCGGTATAAT................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CTTCTAGTTAAAGATTCGTTATAATA.................................................. 26 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................TTAAAGATTCGTTATAATAAA................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTTCTCGTTAAAGATTCGGTATAAA................................................... 25 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
........................AAAGAAACAATCTAACGGA.................................................................................................................. 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0
.................AAGAGAAAAAGAAAAA............................................................................................................................ 16 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
......ATTGAAGTAGAAAAAGAAAAAGAAA.............................................................................................................................. 25 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................ATATGTGGCTCTCTCT.............................................................................................. 16 1 15 0.13 2 0 0 0 1 0 1 0 0 0 0 0 0
.........................................................................................................................................TAATGATTGACAGATTGAGA 20 3 18 0.11 2 0 0 0 0 0 0 0 0 0 0 0 2
......................................................................................CGTTAAAGATTCGGTA....................................................... 16 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TCGGAAAAAAAAAAATAAATAAAAT.................... 25 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGAATTAAATTTTTTTGTCGTT................................................................... 22 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.................AAGAGAAAAAGAAAA............................................................................................................................. 15 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTCGGTTAACTTTATATTTCTCTTTTTCTTTTTTAGATTGGCTTAAATAAACACCGAGAGAGAGTTTGTCTTAATTAAAAAAAAGAGCAATTTCTAAGCAATATTATTTGAGAGTTTCTTTTTTTTTATTTATTTTAATTACTAAGTGTCTTGCTCT
************************************((....((.((((((.(((((....(((..(((((((..........)))).)))..)))...))))))))))).))....))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O002
Head
 SRR902009
testis
 M023
head
......................................TGGCTTAAATAAACACCGAGAGAGAGT............................................................................................ 27 0 1 64.00 64 26 22 6 6 0 0 3 0 0 1 0
......................................TGGCTTAAATAAACACCGAGAGAGAGTT........................................................................................... 28 0 1 62.00 62 28 20 9 1 0 0 4 0 0 0 0
.................................................................................................................................TTATTTTAATTACTAAGTGTCTTGCT.. 26 0 4 41.00 164 18 26 32 0 12 51 12 13 0 0 0
..CGGTTAACTTTATATTTCTCTTTTT.................................................................................................................................. 25 0 2 30.50 61 21 17 7 0 0 2 10 4 0 0 0
...................................................................................................................................ATTTTAATTACTAAGTGTCTTGCT.. 24 0 4 22.50 90 2 7 5 0 11 53 6 5 0 0 1
.......................................GGCTTAAATAAACACCGAGAGAGAGTT........................................................................................... 27 0 1 22.00 22 13 4 1 2 0 0 2 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGTGTCTTGCT.. 28 0 4 14.75 59 4 8 5 0 0 38 3 1 0 0 0
.................................................................TTGTCTTAATTAAAAAAAAGAGCAAT.................................................................. 26 0 1 14.00 14 1 0 0 12 1 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTTT................................................................................................................................... 24 0 3 13.33 40 6 16 16 0 0 0 1 1 0 0 0
...................................................................................AGAGCAATTTCTAAGCCATATTAT.................................................. 24 1 4 9.75 39 28 11 0 0 0 0 0 0 0 0 0
...................................................CACCGAGAGAGAGTTTGTCTTAATT................................................................................. 25 0 2 9.50 19 1 3 1 5 8 0 0 1 0 0 0
.......................................GGCTTAAATAAACACCGAGAGAGAGT............................................................................................ 26 0 1 9.00 9 2 5 1 1 0 0 0 0 0 0 0
..................................................................................................................................TATTTTAATTACTAAGTGTCTTGCT.. 25 0 4 7.75 31 1 3 5 0 2 9 2 9 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTAT.................................................. 24 0 4 6.75 27 5 2 8 0 0 0 12 0 0 0 0
...................................................CACCGAGAGAGAGTTTGTCTTAAT.................................................................................. 24 0 2 5.00 10 0 0 2 0 5 0 2 0 0 1 0
.............................................................................................................GAGAGTTTCTTTTTTTTTATTT.......................... 22 0 1 4.00 4 0 0 0 0 0 0 0 0 4 0 0
..................................................................TGTCTTAATTAAAAAAAAGAGCAAT.................................................................. 25 0 1 4.00 4 2 1 0 0 1 0 0 0 0 0 0
..CGGTTAACTATATATTTCTCTTTTT.................................................................................................................................. 25 1 2 4.00 8 2 4 0 0 0 0 0 2 0 0 0
......................................TGGCTTAAATAAACACCGAGAGAGAGTTT.......................................................................................... 29 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTTTTCT................................................................................................................................ 27 0 1 4.00 4 1 1 0 0 0 0 2 0 0 0 0
.....................................TTGGCTTAAATAAACACCGAGAGAGAGT............................................................................................ 28 0 1 4.00 4 0 0 0 1 0 0 3 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCCATATTAT.................................................. 25 1 4 3.75 15 4 11 0 0 0 0 0 0 0 0 0
........................TTTCTTTTTTAGATTGGCTTAAAT............................................................................................................. 24 0 2 3.50 7 0 0 0 0 7 0 0 0 0 0 0
.................................................................................................................................TTATTTTAATTACTAAGTGTCTTTCT.. 26 1 4 3.50 14 5 9 0 0 0 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCCATATTATTT................................................ 27 1 4 3.00 12 4 8 0 0 0 0 0 0 0 0 0
..CGGTTAACTATATATTTCTCTTTTTCT................................................................................................................................ 27 1 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0
.TCGGTTAACTTTATATTTCTCTTTTT.................................................................................................................................. 26 0 2 2.50 5 0 1 0 4 0 0 0 0 0 0 0
........................................................................................................AATTTGAGAGTTTCTTTTTTTTTATTT.......................... 27 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................AAGCAATATTATTTGAGAGTTTCTTT.................................... 26 0 2 2.00 4 0 3 1 0 0 0 0 0 0 0 0
.....................................ATGGCTTAAATAAACACCGAGAGAGAGT............................................................................................ 28 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................TGGCTTAAATAAACACCGAGAGAGA.............................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTTTG.................................................................................................................................. 25 1 3 2.00 6 3 1 1 0 0 0 1 0 0 0 0
.................................................................ATGTCTTAATTAAAAAAAAGAGCAAT.................................................................. 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................AAGCAATATTATTTGAGAGTTTCTTTTT.................................. 28 0 2 2.00 4 0 3 1 0 0 0 0 0 0 0 0
................................................AAACACCGAGAGAGAGTTTGTCTTAATT................................................................................. 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTTTTC................................................................................................................................. 26 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0
....................................................ACCGAGAGAGAGTTTGTCTTAATT................................................................................. 24 0 2 2.00 4 1 2 0 0 1 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCAATATTATTT................................................ 27 0 4 1.75 7 1 2 2 0 0 0 2 0 0 0 0
...................................................CACCGAGAGAGAGTTTG......................................................................................... 17 0 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCCATATTATT................................................. 25 1 4 1.50 6 4 2 0 0 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCCATATTATTT................................................ 26 1 4 1.50 6 5 1 0 0 0 0 0 0 0 0 0
...................................................CACCGAGAGAGAGTTT.......................................................................................... 16 0 2 1.50 3 0 0 0 0 3 0 0 0 0 0 0
...................................................CACCGAGAGAGAGTTTGTCTTAATTAA............................................................................... 27 0 2 1.50 3 0 0 0 2 1 0 0 0 0 0 0
.................................................................................................................................TTATTTTAATTACTAAGTGTCTTGC... 25 0 4 1.50 6 0 2 1 0 0 0 0 3 0 0 0
................................................................................................AGCAATATTATTTGAGAGTTTCTT..................................... 24 0 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0
GTCGGTTAACTATATATTTCTCTTTTT.................................................................................................................................. 27 1 2 1.50 3 0 0 0 3 0 0 0 0 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAATTAA............................................................................... 24 0 2 1.50 3 0 0 1 0 2 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTC..................................................................................................................................... 22 1 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCT...................................................................................................................................... 21 0 3 1.33 4 2 2 0 0 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATT.................................................... 22 0 6 1.33 8 2 0 0 0 3 0 1 2 0 0 0
..............................................................................................................................TATTTATTTTAATTACTAAGTGTCTTGCT.. 29 0 3 1.33 4 0 0 0 0 0 3 0 0 0 0 1
..........................................................................................................................................TTACTAAGTGTCTTGCT.. 17 0 4 1.25 5 0 0 0 0 5 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCAATATTATT................................................. 26 0 4 1.25 5 1 3 1 0 0 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCAATATTAT.................................................. 25 0 4 1.25 5 0 3 1 0 0 0 0 1 0 0 0
................................................AAACACCGAGAGAGAGTTTGTCTTAAT.................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................ACACCGAGAGAGAGTTTGTCTTAATT................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................AGAGAGAGTTTGTCTTAAT.................................................................................. 19 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
.....................CTTTTTCTTTTTTAGATTGGCTTAAAT............................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATAT..................................................... 21 0 6 1.00 6 1 1 2 0 0 0 2 0 0 0 0
........................TTTCTTTTTTAGATTG..................................................................................................................... 16 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTTTA.................................................................................................................................. 25 1 3 1.00 3 0 0 2 0 0 0 1 0 0 0 0
..................................................................TGTCTTAATAAAAAAAAAGAGCAAT.................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................AAAACACCGAGAGAGAGTTTGTCTTAAT.................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTTTAATTACTAAGTGTCTTGCT.. 23 0 4 1.00 4 0 1 0 0 1 1 0 1 0 0 0
............................................AAATAAACACCGAGAGAGAGTT........................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................AAACACCGAGAGAGAGT............................................................................................ 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAATTAAAAAA........................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................TGGCTTAAATAAACACCGAGAGAGATT............................................................................................ 27 1 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0
..........................................................AGAGAGTTTGTCTTAATTAAAAAAAAGA....................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TTCAGAACTTCTTTTTTTTTATTTAT........................ 26 3 2 1.00 2 0 0 0 1 0 0 0 0 0 1 0
..........................................TTAAATAAACACCGAGAGAGAGTT........................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTTC................................................................................................................................... 24 1 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
..................TCTCTTTTTCTTTTTTAGATTGGCTT................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................AAGATTGGCTTAAATAAACACCGAGAGAGA.............................................................................................. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................AAATAAACACCGAGAGAGAGTTTGTCT...................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTT..................................................................................................................................... 22 0 3 1.00 3 2 1 0 0 0 0 0 0 0 0 0
........................................................AGAGAGAGTTTGTCTTAATCAAAAAA........................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................ATTAAATAAACACCGAGAGAGAGTTT.......................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................TTGGCTTAAATAAACACCGAGAGAGAGTT........................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................AAACACCGAGAGAGAGTTTGTCT...................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................AGATTGGCTTAAATAAACACCGAGAGAGA.............................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAATTAAA.............................................................................. 25 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0
.......................................GGCTTAAATAAACACCGGGAGAGAGTT........................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..CGGTTAACTATATATTTCTCTTTTTC................................................................................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................TAAACACCGAGAGAGAGTTTGTCTT..................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................TGGCTTAAATAAACACCGAGATAGAGTT........................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................GGCTTAAATAAACACCGAGAGAGAGTTT.......................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................AGAGAGAGTTTGTCTTAATTAAAAAAA.......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...GGTTAACTTTATATTTCTCTTTTTC................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAATTAAAA............................................................................. 26 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0
..CGGTTAACTATATATTTCTCTTTTTCTT............................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................AAGCAATATTATTTGAGAGTTTCTT..................................... 25 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................TAAACACCGAGAGAGAGTTTGTCTTAAT.................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................TGACTTAAATAAACACCGAGAGAGAGTT........................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................TTCTTAATTAAAAAAAAGAGCAAT.................................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................AAGCAATATTATTTGAGAGTTTCTTTT................................... 27 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
.................................................................TTGTCTTAATAAAAAAAAAGAGCAAT.................................................................. 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTC.................................................................................................................................... 23 1 3 1.00 3 1 0 0 0 0 0 2 0 0 0 0
..................................................................................................................TATCTTTTTTTTTAATTATTTTAAT.................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TAATTACTAAGTGTCTTGCT.. 20 0 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0
......................................................................................................................................TTAATTACTAAGTGTCTTGCT.. 21 0 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0
...................................................................................................................................ATTTTAATTACTAAGTGTCTTGCTCT 26 0 4 0.75 3 0 2 1 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGTGTCT...... 24 0 4 0.75 3 0 2 1 0 0 0 0 0 0 0 0
...................................................................................................................................ATTTTAATTACTAAGTGTCTTGCTC. 25 0 4 0.75 3 0 1 2 0 0 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCAATATT.................................................... 23 0 4 0.75 3 0 0 1 0 2 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTC....................................................................................................................................... 20 0 3 0.67 2 0 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................TATTTATTTTAATTACTAAGTGTC....... 24 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0
..CGGTTAACTTTATATT........................................................................................................................................... 16 0 3 0.67 2 0 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................TATTTATTTTAATTACTAAGTGTCTTT.... 27 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0
GTCGGTTAACTTTATATTTCTCTTTT................................................................................................................................... 26 0 3 0.67 2 0 0 0 1 0 0 0 1 0 0 0
................................................................................................................ATTATCTTTTTTTTTAATTATTTTAAT.................. 27 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCT........................................................................................................................................ 19 0 3 0.67 2 0 1 0 0 0 1 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAAT....................................................... 19 0 6 0.67 4 0 2 1 0 0 0 1 0 0 0 0
..CGGTTAACTTTATATTT.......................................................................................................................................... 17 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTCTC................................................................................................................................... 24 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0
..CGGTTAACGTTATATTTCTCTTTGT.................................................................................................................................. 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................AGAGAGAGTTTGTCTTAATTT................................................................................ 21 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
....................................................ACCGAGAGAGAGTTTGTCTTAAT.................................................................................. 23 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...................................................TACCGAGAGAGAGTTTGTCTTAAT.................................................................................. 24 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................ATTATTTGAGAGTTTCTTTTTTTT............................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
........................................................AGAGAGAGTTTGTCTTAATTAAAACAA.......................................................................... 27 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
......................................TGGCTTAAATAAACACCGAGAGAG............................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................................CACCGAGAGAGAGGTTGTCTTAATT................................................................................. 25 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
..CGGTTAACTTTATATTTCTTTTTTT.................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................TAGATTGGCTTAAATAAACACC...................................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................TTATTCATTAGATTGGCTTAAAT............................................................................................................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................AGCAATATTATTTGAGAGTTTCTTTTTCAA............................... 30 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
......................................TGGCTTAAATAAACACCG..................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAGCAATATTATTTGAGAGTTTCT...................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................AGCAATATTATTTGAGAGTTTCTTTTTT................................. 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................AAAAAAAGAGCAATTTCTAAGCAATATT.................................................... 28 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................GAGAGAGAGTTTGTCTTAATT................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.......................CTTTCTTTTTTAGATTGGCTTAAAT............................................................................................................. 25 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTATT................................................. 25 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0
...................................................CACCGAGAGAGAGTTTGTCTTAATTAAA.............................................................................. 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.............................TTTTTAGATTGGCTTAAATAAACAC....................................................................................................... 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................AGCAATATTATTTGAGAGTTTCT...................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................AAAAGAGCAATTTCTAAGCAATATT.................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAGT.................................................................................. 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................TTTATTTTAATTACTAAGTGTCTTGCT.. 27 0 4 0.50 2 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................ATTTTAATTACTAAGTGTCTTTCT.. 24 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
......................................TGGCTTAAATAACCACCGAGAGAGAGT............................................................................................ 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAAT.................................................................................. 21 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.......................................GGCTTAAATAACCACCGAGAGAGAGTT........................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AAAGAGCAATTTCTAAGCAATATTATTT................................................ 28 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................AAAAAGAGCAATTTCTAAGCAATATT.................................................... 26 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
..CGGTTAACTATATATTTCTCTTTCT.................................................................................................................................. 25 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AATTACTAAGTGTCTTGCT.. 19 0 4 0.50 2 0 0 1 0 1 0 0 0 0 0 0
........................TTTCTTTTTTAGATTGGCTTAAATAA........................................................................................................... 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................AGCAATATTATTTGAGAGTTTCTTTT................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATTTTAATTACTAAGTGTCTTGC... 23 0 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0
......................................................CGAGAGAGAGTTTGTCTTAATTA................................................................................ 23 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...................................................CACCGAGAGAGAGTTTGTCTTAATTA................................................................................ 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..CGGTTAACTATATATTCCTCTTTTT.................................................................................................................................. 25 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTATTTATTTTAATTACTAAGTGTCT...... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTTT.................................................................................................................................... 23 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..CGGTGAACTTTATATTTCTCTTTTT.................................................................................................................................. 25 1 6 0.33 2 1 0 0 0 0 1 0 0 0 0 0
..CGGTTAACTTTATATTTCTCCTC.................................................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
GTCGGTTAACTTTATATTTCT........................................................................................................................................ 21 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
GTCGGTTAACTTTATATTTCTCTT..................................................................................................................................... 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................TATTTATTTTAATTACTAAGTGTCTTGA... 28 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTATTTATTTTAATTACTAAGTGT........ 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTATTTATTTTAATTACTAAGTGTCTTGC... 29 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0
...............................TTTAAATTGGCTTAAATAAA.......................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..CGGTTAACTTTATATTTCTCTCC.................................................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
........................................................ATAGAGAGTTTGTCTTAATTAA............................................................................... 22 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..CGGTTAACTTTATATTTCCTTTTC................................................................................................................................... 24 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TAAAAAGAAGAGCAATTTCTAAGCAAT....................................................... 27 1 6 0.33 2 0 2 0 0 0 0 0 0 0 0 0
......TAACTTTATATTTCTC....................................................................................................................................... 16 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................AGAGAGTTTGTCTTAATTAAA.............................................................................. 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................AGAGTTTCTTTTTTTT............................... 16 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...GGTTAACTTTATATTTCTCTTTT................................................................................................................................... 23 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..CGGTTAACTATATATTTCTCTTTT................................................................................................................................... 24 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................AGAGAGTTTGTCTTAA................................................................................... 16 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................AGAGAGTTTGTCTTAATT................................................................................. 18 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...................................................CGCCGAGAGAGAGATTGTCTTAAT.................................................................................. 24 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................TTGTCTTAATTAAAA............................................................................. 15 0 7 0.29 2 0 1 0 0 1 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCAATAT..................................................... 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ATTACTAAGTGTCTT..... 15 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCCATATTA................................................... 24 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATATATTTTAATTACTAAGTGTCTTGCT.. 28 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................AAGAGCAATTTCTAAGCCATATTATT................................................. 26 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATTTTAATTACTAAGTGTCTTTCTCT 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTATTT................................................ 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTATTTC............................................... 27 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TAGAGCAATTACTAAGCCATATTATT................................................. 26 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AAAGAGCAATTTCTAAGCAATATT.................................................... 24 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................TTAATTACTAAGTGT........ 15 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TATTTTAATCACTAAGTGTCTTGCT.. 25 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................AATTTTAATTACTAAGTGTCTTGCTCT 27 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................AAAGAGTTTGTCTTAATT................................................................................. 18 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGTGTCTTTCT.. 28 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGTGTCTTGC... 27 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................TGAGCAATTTCTAAGCCATATTAT.................................................. 24 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TAGAGCAATTTCTAAGCCATATTATT................................................. 26 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTA................................................... 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................ATTATTTTAATTACTAAGTGTCTTGCT.. 27 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................CTTATTTTAATTACTAAGTGTCTTGCT.. 27 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................TTTAATTACTAAGTGTCTTGCT.. 22 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGTGTCTT..... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AAAAATTACTAAGTGTCTTGCTCT 24 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................AAAGAGCAATTTCTAAGCAATATTAT.................................................. 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTATTTTAATTACTAAGTGTCTTTCTCT 28 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTAATTACTAAGTGTCTTTCT.. 22 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTATTTTAATTACTAAGTGTCTTGCTC. 27 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................AAGAGCAATTTCTAACCAATATT.................................................... 23 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................TTATTTTAATTACTAAGTGTCTTTCC.. 26 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................TACTAAGTGTCTTGCT.. 16 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................GAGCAATTTCTAAGCAATATTAT.................................................. 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGT.......... 20 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATATTTTAATTACTAAGTGTCTTGCT.. 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................TTATTTTAATTACTACGTGTCTTGCT.. 26 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTATTTTAATTACTAAGTATCTTGCT.. 28 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................ATTTATTTAATTACTAAGTGTCTTGCT.. 27 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................TTAATTACTAAGTGTCTTGCTC. 22 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................AATTTTAATTACTAAGTGTCT...... 21 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................AAATACTAAGTGTCTTGCT.. 19 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................AGAGCGATTTCTAAGCCATATTAT.................................................. 24 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TATTTTAATTACTAAGTGTCTTGC... 24 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
................................TTAGATTGGCTTAAAT............................................................................................................. 16 0 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
................................................................................................................................ATTATTTTAATTACTAAGT.......... 19 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................AAAAAGAAGAGCAATTTCTAAGCAAT....................................................... 26 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATTTTAATTACTAAG........... 15 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTTT.................................................. 24 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCAATATTC................................................... 23 1 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................AGAAAAGCAATTTCTAAGCAATATT.................................................... 25 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................GCAATTTCTAAGCAAT....................................................... 16 0 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................AGAGCAATTTCTAAGCCATAT..................................................... 21 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TAATAAAGAGCAATTTCTA............................................................. 19 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
.............................TTTTTACATTGGCTTAAAT............................................................................................................. 19 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
....................................ATGGGCTTAAATAAA.......................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_59228:644-800 + dsi_353 CAGCCAAT---TGAAATATAAAG-AGAAAAAGA----AAAA-AT----------CTAACCGAATTTATTTGTGGCTCTCTCTCAAACAGAATTAATTTTTTT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AAACTCTCAA----------------------------------------------------------------AGAAAAAAAAATAAATAAAATTAATGATTCACAGAA-CGAGA
droSec2 scaffold_57:142081-142238 + CAGCCATT---TGAAATATAAAG-AGAAAAAGAA-AAAAAA-AT----------ATAACCGAATTTATTTGTGGCTCTCTCTCAAACAGAATTAAATTTTTT-TTTT-TC-----------------------------------------------------G--TTAAAGATTCGTTATAAA-------GAAAACTCAAAA-AAA-------------------------------------------------------------------AATAAATAAAATTAATAATTCACAGAA-CGAGA
dm3 chrUextra:6294174-6294338 + CAGCCATT---TGAAATATAATG-AGAAAAGACAAA-AAAA-ATGAAAAAAGAGCTAACCGAATTTACTCGCGGCTCTCTCTCAAACAGAAGTAAATTTTTT----T-CC-----------------------------------------------------G--TTAAAGATTCAGTATAAA-------GAAAACTCAAAG-AAA-------------------------------------------------------------------AATAAATAAAATTAATAATTCACAGAA-CGAGA
droEre2 scaffold_4784:23320109-23320300 + TATTGAAT---CTAAA-GAATACACTGGG-------------------------------------------AACAATTTATTAAATATGAATGTATATATT---------------------------------------------------------TATATTTCTAAAGTTAGCTATTAAA-------TATTAATTATAA-TCAACGCGATTATAACTAACTTTTACGTGAACAACTCGTTTATATTTTATTTAATTCACTAATCAAAGAAACTGAGTAAA--AAATAATTTATTAAA-CAAGA
droBia1 scf7180000298100:65413-65519 + AAACCCTT---AAA-----------------GAA-AAAAAA-TT----------TGACGCGAATTTAAT----------TTTTAAATTTAATGGAATTTTTT----GGTA-----------------------------------------------------A--TCCTAGATATATTA---------------------AA-ACA-------------------------------------------------------------------AACAAATCAAATGAAAAGCTCAC----------
droTak1 scf7180000410668:67259-67406 + CCGTTATT---TGAAATTTAATA-ATGCCAAAAG-A-ATGAATTAAAAC-----T-AAAA-AAATTAAT---------------------------TATTTCAATTT-TTACTGAAAATTT-CCTCTATG---------------------------------G-----------------TAAAAGTAATAAATTTTAAT----------------------------------------------------------------AAAAATAAAAGTAAATA--ACTAGCGAGTCACTGAT-GAATA
droEle1 scf7180000489614:17605-17731 + CTATTACT---TCTAACATTAACTTTGGAAAAAA-A-AAAA-AT----------T------AAT-----------------------------------------TT-ACAATGAGAATTTTTTTCTTTA---------------------------------A-----------------AAA-------AAAAATTTAATTTTAAAT--------------------------------------------------------AAAATTAAAAGTAATTA--CCTAGCGAACCACTGAT-GAATA
droKik1 scf7180000298425:6222-6391 + TACATAATCTCTGAAATTTAAAA-AAA-AAAGAA-A-AAAT-AT----------T------AACTTAAC-----------------------------------------TATTATAATTTTATTAATAATGATTTAAGGCCTTTGAGCTGCAGAAATTTAAGATCTTGAAGAAAGCATACAAA-------AAAAAATAATAA-CAA-------------------------------------------------------------------AAAAAATAAAATTAATAATTTCAAGAATTGAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCCAAT---TGAAATATAAAG-AGAAAAAGA----AAAA-AT----------CTAACCGAATTTATTTGTGGCTCTCTCTCAAACAGAATTAATTTTTTT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AAACTCTCAA----------------------------------------------------------------AGAAAAAAAAATAAATAAAATTAATGATTCACAGAA-CGAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------....................................................................................................................254143.255730000001142151381000060000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------A...................................................................................................................26422.7591000100213514130070000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAATT..................................................................................................................................................................................................................28121.002100000079020030000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAA............................................................................................................................24416.5066000000111815150070000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATA.............................................................................................................................23414.005600000071614160030000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAAT...................................................................................................................................................................................................................27112.001200000015200040000
.................................................................TATTTGTGGCTCTCTCTCAAACAGAAT.......................................................................................................................................................................................................................27111.0011000000001000100000
........................................................................................................................................................................................................................................................................................TAAAATTAATGATTCACAGAA-CGAGA2649.25370000001416430000000
.................................................................TATTTGTGGCTCTCTCTCAAACAGAA........................................................................................................................................................................................................................2616.00600000000000060000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTA.....................................................................................................................................................................................................................2516.00600000000000060000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AAA.................................................................................................................2845.2521000000511500000000
....................................................................TTGTGGCTCTCTCTCAAACAGAATTAAT...................................................................................................................................................................................................................2815.00500000021010010000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAATTTT................................................................................................................................................................................................................3015.00500000005000000000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACCGA.....................................................................................................................................................................................................................................................2614.00400010001010010000
.................................................................TATTTGTGGCTCTCTCTCAAACAGAATA......................................................................................................................................................................................................................2814.00400000000000040000
.......................................................................TGGCTCTCTCTCAAACAGAATTAATT..................................................................................................................................................................................................................2623.50700000022030000000
................................................................TTATTTGTGGCTCTCTCTCAAACAGAAT.......................................................................................................................................................................................................................2813.00300000000000021000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACC.......................................................................................................................................................................................................................................................2413.00300000000102000000
...............................................................TTTATTTGTGGCTCTCTCTCAAACAGAA........................................................................................................................................................................................................................2813.00300000000000030000
................................................................TTATTTGTGGCTCTCTCTCAAACAGAA........................................................................................................................................................................................................................2713.00300100000000020000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AA..................................................................................................................2742.501000000025110010000
............................................................................................................................................................................................................................................................................................ATTAATGATTCACAGAA-CG...1942.25900009000000000000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACCG......................................................................................................................................................................................................................................................2512.00200000000002000000
...................................................................TTTGTGGCTCTCTCTCAAACAGAAT.......................................................................................................................................................................................................................2512.00200010000000010000
.................................................................TATTTGTGGCTCTCTCTCAAACAGAAAA......................................................................................................................................................................................................................2812.00200000000000020000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAAC........................................................................................................................................................................................................................................................2312.00200000000000020000
....................................................................TTGTGGCTCTCTCTCAAACAGAATTAATT..................................................................................................................................................................................................................2912.00200000001000001000
....................................................................TTGTGGCTCTCTCTCAAACAGAAT.......................................................................................................................................................................................................................2412.00200000000000020000
.....................................................................TGTGGCTCTCTCTCAAACAGAA........................................................................................................................................................................................................................2212.00200000000000020000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACCGAAT...................................................................................................................................................................................................................................................2812.00200000001010000000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAATTT.................................................................................................................................................................................................................2912.00200000002000000000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAA....................................................................................................................................................................................................................2612.00200000000000020000
..............................................................................................................................................................................................................................................................................................TAATGATTCACAGAA-CGAGA2041.75700000003220000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTAT..............................................................................................................................2241.50600000011040000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------T...................................................................................................................2641.25500000003110000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAA-------....................................................................................................................2541.25500000003000020000
.................................................................TATTTGTGGCTCTCTCTCAAACAGAAA.......................................................................................................................................................................................................................2711.00100000000000010000
................................................................TTATTTGTGGCTCTCTCTCAAACAG..........................................................................................................................................................................................................................2511.00100000000010000000
...................................................................TTTGTGGCTCTCTCTCAAACAGAATTAA....................................................................................................................................................................................................................2811.00100000000000010000
.................................................................TATTTGTGGCTCTCTCTCA...............................................................................................................................................................................................................................1911.00100000000001000000
...................................................................TTTGTGGCTCTCTCTCAAACAGAATTAT....................................................................................................................................................................................................................2811.00100000000000010000
...................................................................TTTGTGGCTCTCTCTCAAACAGAATA......................................................................................................................................................................................................................2611.00100000000000010000
............................................................................................TAATTTTTTT----TCTC-----------------------------------------------------G--TTAAAGATT....................................................................................................................................2411.00100000000001000000
....................AAG-AGAAAAAGA----AAAA-AT----------CT...........................................................................................................................................................................................................................................................2011.00100000000001000000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACAT......................................................................................................................................................................................................................................................2511.00100000000000010000
.......................................................................TGGCTCTCTCTCAAACAGAATTAATTT.................................................................................................................................................................................................................2721.00200000010100000000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAATA..................................................................................................................................................................................................................2811.00100000000000010000
....................................................................TTGTGGCTCTCTCTCAAACAGAATT......................................................................................................................................................................................................................2511.00100000000000010000
...................................................................TTTGTGGCTCTCTCTCAAACAGAATT......................................................................................................................................................................................................................2611.00100000000000010000
..............................................................ATTTATTTGTGGCTCTCTCTCAAAC............................................................................................................................................................................................................................2511.00100000000010000000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACCGAAA...................................................................................................................................................................................................................................................2811.00100000000000010000
..................................................................................................................................................................................TATAAT-------AAACTCTCAA----------------------------------------------------------------AGAAAAAAAAAA..............................2811.00100000000010000000
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAAA...................................................................................................................................................................................................................2711.00100000000000010000
....................................................................................................................................................................................................................................................................................TAAATAAAATTAATGATTCACAGAA-CGAGA3041.00400000013000000000
....................................................................TTGTGGCTCTCTCTCAAACAGAATTA.....................................................................................................................................................................................................................2611.00100000000000010000
....................................................................TTGTGGCTCTCTCTCAAACAGAATTAAA...................................................................................................................................................................................................................2811.00100000001000000000
.................................................................TATTTGTGGCTCTCTCTCAAACAGA.........................................................................................................................................................................................................................2511.00100000000010000000
....................AAG-AGAAAAAGA----AAAA-AT----------CTAACCGAA....................................................................................................................................................................................................................................................2711.00100000010000000000
...............................................................TTTATTTGTGGCTCTCTCTCAAACAGA.........................................................................................................................................................................................................................2711.00100000010000000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AT..................................................................................................................2740.75300000001100010000
.......................................................................................................................................................................................................................................................................................ATAAAATTAATGATTCACAGAA-CGAGA2740.75300000011010000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTA...............................................................................................................................2140.75300000010200000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAT............................................................................................................................2440.75300000002000010000
....................AAG-AGAAAAAGA----AAAA-AT----------.............................................................................................................................................................................................................................................................1830.67200000000002000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AAT.................................................................................................................2840.50200000010100000000
.......................................................................TGGCTCTCTCTCAAACAGAATTAATTTT................................................................................................................................................................................................................2820.50100000001000000000
...........................................................................TCTCTCTCAAACAGAATTAATTTT................................................................................................................................................................................................................2420.50100000001000000000
................................................................................................TTTTTT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTA...............................................................................................................................2520.50100000001000000000
.............................................................................................................................................................................TTCGTTATAAT-------AAACTCTCAA----------------------------------------------------------------AGAAA.....................................2620.50100000000001000000
..........................................................CCGAATTTATTTGTGGCTCTC....................................................................................................................................................................................................................................2120.50100000000000010000
.......................................................................TGGCTCTCTCTCAAACAGAATTAA....................................................................................................................................................................................................................2420.50100000000000010000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAA-------T...................................................................................................................2640.50200000000110000000
..................................................................................................TTTT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------A...................................................................................................................2820.50100000001000000000
.............................................................................................................................................................................TTCGTTATAAT-------AAACTCTCAA----------------------------------------------------------------AGA.......................................2420.50100010000000000000
...................................................................................................TTT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------A...................................................................................................................2720.50100000000100000000
.....................................................................................................T----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------A...................................................................................................................2540.50200000001010000000
........................................................................GGCTCTCTCTCAAACAGAATTAATTT.................................................................................................................................................................................................................2620.50100000000100000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------TT..................................................................................................................2740.50200000010010000000
.............................................................................................................................................................................TTCGTTATAAT-------AAACTCTCAA----------------------------------------------------------------AGAA......................................2520.50100000000001000000
......................................................................GTGGCTCTCTCTCAAACAGAATTAATT..................................................................................................................................................................................................................2720.50100000000010000000
..GCCAAT---TGAAATATAAAG-AGA........................................................................................................................................................................................................................................................................................2130.33100000001000000000
......................................................................................................................................................................TTAAAGATTCGTTATAAT-------AAAC................................................................................................................2230.33100000001000000000
...........................................................................................................................................................................................................................................................................................AATTAATGATTCACAGAA-CGAGA2340.25100000010000000000
........................................................................................................................................................................................................................................................................................TAAAATTAATGATTCACAGAA-CGAG.2540.25100000000100000000
.............................................................................................................................................................................................................................................................................................TTAATGATTCACAGAA-CGAG.2040.25100000010000000000
....................AAG-AGAAAAAGA----AAAA-A........................................................................................................................................................................................................................................................................1740.25100000000001000000
....................................................................................................................................................................................................................................................................................TAAATAAAATTAATGATTCACAGAA-C....2640.25100000000100000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------ATT.................................................................................................................2840.25100000010000000000
....................................................................................................................................................................................................................................................................................TAAATAAAATTAATGATTCACAGAA-.....2540.25100000000010000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAC-------....................................................................................................................2540.25100000001000000000
....................................................................................................................................................................................................................................................................................TAAATAAAATTAATGATTCACAGA.......2440.25100000001000000000
..........................................................................................................................................................................................................................................................................................AAATTAATGATTCACAGAA-CGAGA2440.25100000001000000000
....................................................................................................TT----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------TC..................................................................................................................2740.25100000001000000000
......................................................................................................................................................................................................................................................................................AATAAAATTAATGATTCACAGAA-CGAGA2840.25100000010000000000
..............................................................................................................................................................................................................................................................................................TAATGATTCACAGAA-CGAG.1940.25100000001000000000
.....................................................................................................T----TCTC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------AA..................................................................................................................2640.25100000010000000000
....................................................................................................................................................................................................................................................................................TAAATAAAATTAATGATTCACAGAA-CGA..2840.25100000000010000000
......................................................................................................................................................................................................................................................................................AATAAAATTAATGATTCACAGAA-CGAG.2740.25100000001000000000
............................................................................................................TC-----------------------------------------------------G--TTAAAGATTCGTTATAAT-------....................................................................................................................2140.25100000000100000000
......................................................................................................................................................................TTAAAGATTCGTTATAAT-------AAA.................................................................................................................2150.20100000010000000000
....................AAG-AGAAAAAGA----AAAA-.........................................................................................................................................................................................................................................................................1660.17100000000001000000
....................AAG-AGAAAAAGA----AAA...........................................................................................................................................................................................................................................................................15160.06100000000001000000
droSec2
CAGCCATT---TGAAATATAAAG-AGAAAAAGAA-AAAAAA-AT----------ATAACCGAATTTATTTGTGGCTCTCTCTCAAACAGAATTAAATTTTTT-TTTT-TC-----------------------------------------------------G--TTAAAGATTCGTTATAAA-------GAAAACTCAAAA-AAA-------------------------------------------------------------------AATAAATAAAATTAATAATTCACAGAA-CGAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................TGTGGCTCTCTCTCAAACAGAATTAAAT..................................................................................................................................................................................................................28120.0811000
.........................................................ACCGAATTTATTTGTGGCTCTCTC..................................................................................................................................................................................................................................24120.0811000
...........................................................CGAATTTATTTGTGGCTCTCT...................................................................................................................................................................................................................................21120.0811000
dm3
CAGCCATT---TGAAATATAATG-AGAAAAGACAAA-AAAA-ATGAAAAAAGAGCTAACCGAATTTACTCGCGGCTCTCTCTCAAACAGAAGTAAATTTTTT----T-CC-----------------------------------------------------G--TTAAAGATTCAGTATAAA-------GAAAACTCAAAG-AAA-------------------------------------------------------------------AATAAATAAAATTAATAATTCACAGAA-CGAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
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...................................................................................................................................................................................................................................................................................ATAAATAAAATTAATAATTCA...........21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TCAAACAGAAGTAAATTTTTT----T-CC-----------------------------------------------------G--TT...........................................................................................................................................2790.1110000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
TATTGAAT---CTAAA-GAATACACTGGG-------------------------------------------AACAATTTATTAAATATGAATGTATATATT---------------------------------------------------------TATATTTCTAAAGTTAGCTATTAAA-------TATTAATTATAA-TCAACGCGATTATAACTAACTTTTACGTGAACAACTCGTTTATATTTTATTTAATTCACTAATCAAAGAAACTGAGTAAA--AAATAATTTATTAAA-CAAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droBia1
AAACCCTT---AAA-----------------GAA-AAAAAA-TT----------TGACGCGAATTTAAT----------TTTTAAATTTAATGGAATTTTTT----GGTA-----------------------------------------------------A--TCCTAGATATATTA---------------------AA-ACA-------------------------------------------------------------------AACAAATCAAATGAAAAGCTCAC----------SizeHit CountTotal NormTotal
No Reads
droTak1
CCGTTATT---TGAAATTTAATA-ATGCCAAAAG-A-ATGAATTAAAAC-----T-AAAA-AAATTAAT---------------------------TATTTCAATTT-TTACTGAAAATTT-CCTCTATG---------------------------------G-----------------TAAAAGTAATAAATTTTAAT----------------------------------------------------------------AAAAATAAAAGTAAATA--ACTAGCGAGTCACTGAT-GAATASizeHit CountTotal NormTotal
No Reads
droEle1
CTATTACT---TCTAACATTAACTTTGGAAAAAA-A-AAAA-AT----------T------AAT-----------------------------------------TT-ACAATGAGAATTTTTTTCTTTA---------------------------------A-----------------AAA-------AAAAATTTAATTTTAAAT--------------------------------------------------------AAAATTAAAAGTAATTA--CCTAGCGAACCACTGAT-GAATASizeHit CountTotal NormTotal
No Reads
droKik1
TACATAATCTCTGAAATTTAAAA-AAA-AAAGAA-A-AAAT-AT----------T------AACTTAAC-----------------------------------------TATTATAATTTTATTAATAATGATTTAAGGCCTTTGAGCTGCAGAAATTTAAGATCTTGAAGAAAGCATACAAA-------AAAAAATAATAA-CAA-------------------------------------------------------------------AAAAAATAAAATTAATAATTTCAAGAATTGAGASizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 04:08 PM