ID:

dsi_3526

 Coordinate:

3l:8229610-8229759 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAAATTAAAAAGTAATTTTAGATTAACACGAATAAAAGAAACTTACTACATTAATAGAAAACAATTTCACCGATTATAAAATTCTAATTTTATGAATTTCGCAAGTTAAACAACCTAATTATCATAACAATATTCAAATGTTTGAGCTAGAGAAGTTCGACTGGTGATTGTTTTCATTTTGTTTTGTTTTTTCGGTTAAGGACTATCATCCGATTTAACAATCCGACGGCTGGGCACTTCAGGCGCTGTT
**************************************************..............((...((((..(((((((.........(((((..((((.((((.(((...((.....(((.((((.........))))))).....))..))).)))).)))).....)))))...)))))))....))))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
..................................................................................................................................................................................................................................CGGCTGGGCACTTCAGGCGCT... 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................................AACAATCCGACGGCTGGGCAT............. 21 1 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................TGGTGATTGTTTTAATTGGGTTT.................................................................. 23 3 1 1.00 1 0 0 1 0 0
..............................................................................................................................................TGAGCTAGAGAAGTTCGACTGGTGAA.................................................................................. 26 1 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................TGTTTTTTTTTTCGGTTAAGGACTAT............................................ 26 3 2 0.50 1 1 0 0 0 0
.................................................................................................................................................................................TTTGTTTTGTTTTGTCGGTTAAA.................................................. 23 2 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................TGATTGTTTTCATCTTTTATTGT............................................................... 23 3 4 0.25 1 0 0 0 1 0
.............................................................................................................................................................................................................................TCTGAGGGCTGGGCAC............. 16 2 20 0.10 2 0 0 2 0 0
.........................................................................................................................................................AGTTCGACTAGTGATCGTC.............................................................................. 19 3 11 0.09 1 0 0 0 0 1
.......................................................................................................................................................GAAGTTAGGCTGGTGA................................................................................... 16 2 20 0.05 1 0 0 0 1 0
.......AAAAGTAATTCTAGA.................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

ATTTAATTTTTCATTAAAATCTAATTGTGCTTATTTTCTTTGAATGATGTAATTATCTTTTGTTAAAGTGGCTAATATTTTAAGATTAAAATACTTAAAGCGTTCAATTTGTTGGATTAATAGTATTGTTATAAGTTTACAAACTCGATCTCTTCAAGCTGACCACTAACAAAAGTAAAACAAAACAAAAAAGCCAATTCCTGATAGTAGGCTAAATTGTTAGGCTGCCGACCCGTGAAGTCCGCGACAA
**************************************************..............((...((((..(((((((.........(((((..((((.((((.(((...((.....(((.((((.........))))))).....))..))).)))).)))).....)))))...)))))))....))))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................................................................................TCAAGCTGACCACTAACAAAA............................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAGGTTGACCACTAACAAGAGT.......................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTGATAGTAGGCTAAATTGTT............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GATCTCTTCAAGCTGACCACT................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CTGATAGTAGGCTAAATTGTTA............................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGATCTCTTCAAGCTGACCAC.................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................AGTTTCTTTGAATGATGTAATTATCTT............................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................TGTTATAAGTTTACAAACTCGATCT................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................ACAAAAGTAAAACAAAACA............................................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
............................................................TGTTAAAGTGGCTCA............................................................................................................................................................................... 15 1 18 0.28 5 0 0 0 0 5 0 0 0 0 0
...........................................ATGATGTGATTATCTTT.............................................................................................................................................................................................. 17 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TTTAGGCTACCGACCCGCGA............ 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
..............................................................TTAAAGTGGCTCATA............................................................................................................................................................................. 15 1 12 0.17 2 0 0 0 0 1 0 0 0 0 1
.................................................................AAGTGGCTATGATTTTAA....................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................ACTTGATCTCCGCAAGCTG......................................................................................... 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
............................................................TGTTAAAGTGGCTCAGA............................................................................................................................................................................. 17 2 20 0.10 2 0 0 0 0 2 0 0 0 0 0
....................................................TTATCTTTTGATAAAGT..................................................................................................................................................................................... 17 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.............................................................GTTAAAGTGGCTCAGAT............................................................................................................................................................................ 17 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0
...........................................................................TAGTTTGAGATTAGAATAC............................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGACCCGGGAAGTCCT...... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....................................................TTATCTTGTGTTAAAG...................................................................................................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTTGTTAGGCTGCCC.................... 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:46 AM