ID:

dsi_3525

 Coordinate:

3l:16114843-16115045 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTGCCAGTCCTTGCTGCTCTGCTTCAAGGATAATGTTCTGGAGAGGAAGGTACATTTCCAATTAATACACACCTAAATAACCTTTAAAACACACAATGTTATTTGCCTGCCCTGGCTTATGTTATTCGTTGCTTAAATGAGAAACAAGAAGCAAATACCCATTTTTGCACCACTATTGTTCCGGCTACACTGTAAACAAATCTAGCTGCATAATGCATATCTAAGCCCTGCTTTTACCACTTTGTTTTTCAGTACGCCAGCGAACCAGATCGCATGTTGTGTGTTTACTTCTACTGCAGTCT
**************************************************........................................((.((((((.(((..(((......)))..))).)))).))))......(((((((((((..(((((........))))).....((((((..((((((...((....))....)))))).)))))).......((((...)))).......))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 GSM343915
embryo
......................................................................................................................................................................................................................................................................GAACCAGATCGCATGTTG....................... 18 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GAACCAGATCGCATGTGG....................... 18 1 1 1.00 1 1 0 0 0 0 0 0
....................................TTCAGGAGAGGAAGGTAGA........................................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................CTAAATAACGTTGAAAACA................................................................................................................................................................................................................... 19 2 5 0.40 2 0 0 2 0 0 0 0
............................................................................................................................................................................ACTAATGTTCCGGCG.................................................................................................................... 15 2 20 0.35 7 0 0 0 7 0 0 0
.............................................................................................ACAGTGTTATATGCCTGTCC.............................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 1 0 0
......................................CAGGAGAGGAAGGTA.......................................................................................................................................................................................................................................................... 15 1 10 0.20 2 0 2 0 0 0 0 0
.................................................................................................................................................................................................................................................TTTGATTTTCAGTACG.............................................. 16 1 12 0.08 1 0 1 0 0 0 0 0
...............................................................................................AATGTTACTTGACGGCCCT............................................................................................................................................................................................. 19 3 12 0.08 1 0 0 0 0 0 1 0
............................................................................................................................................................................ACTAATGTTCCGGCGTCA................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................TGTTCGGTCTTTACTTCTA......... 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TGACGGTCAGGAACGACGAGACGAAGTTCCTATTACAAGACCTCTCCTTCCATGTAAAGGTTAATTATGTGTGGATTTATTGGAAATTTTGTGTGTTACAATAAACGGACGGGACCGAATACAATAAGCAACGAATTTACTCTTTGTTCTTCGTTTATGGGTAAAAACGTGGTGATAACAAGGCCGATGTGACATTTGTTTAGATCGACGTATTACGTATAGATTCGGGACGAAAATGGTGAAACAAAAAGTCATGCGGTCGCTTGGTCTAGCGTACAACACACAAATGAAGATGACGTCAGA
**************************************************........................................((.((((((.(((..(((......)))..))).)))).))))......(((((((((((..(((((........))))).....((((((..((((((...((....))....)))))).)))))).......((((...)))).......))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
........................................................AAGGTGAATTATGTGTG...................................................................................................................................................................................................................................... 17 1 2 3.00 6 3 3 0 0 0 0 0 0
.........................................................AGGTGAATTATGTGTG...................................................................................................................................................................................................................................... 16 1 4 1.50 6 5 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AAGCGTGCAAAACACAAATGAA............ 22 3 4 1.25 5 0 0 5 0 0 0 0 0
........................................................AAGGTGAATTATGTGT....................................................................................................................................................................................................................................... 16 1 7 1.14 8 7 1 0 0 0 0 0 0
...........................................................................................................................................................................AAGATAACAAGGCCGATGTGACATTTGT........................................................................................................ 28 2 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................AACGACGTATTACGTATAGATTCGGGA......................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0
........................................................AAGGTGAATTATGTGTGA..................................................................................................................................................................................................................................... 18 2 6 1.00 6 4 2 0 0 0 0 0 0
..........................................................GGTTAATTATGTGTG...................................................................................................................................................................................................................................... 15 0 2 1.00 2 2 0 0 0 0 0 0 0
.......................................................AAAGGTGAATTATGTGT....................................................................................................................................................................................................................................... 17 1 4 0.75 3 0 3 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGCGTGCAAAACACAAATGAAA........... 22 3 3 0.67 2 0 0 2 0 0 0 0 0
.......................................................AAAGGTGAATTATGTGTGA..................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................AGGTTAATTATGTGTGA..................................................................................................................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................AGGTGAATTATGTGT....................................................................................................................................................................................................................................... 15 1 20 0.50 10 5 5 0 0 0 0 0 0
.........................................................AGGTTAATTATGTGTG...................................................................................................................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CGAAAATGGGGAAACAAGATG.................................................... 21 3 5 0.40 2 0 0 0 0 2 0 0 0
.......................................................AAAGGTGAATTATGTG........................................................................................................................................................................................................................................ 16 1 7 0.29 2 1 1 0 0 0 0 0 0
..........................................................GGTGAATTATGTGTG...................................................................................................................................................................................................................................... 15 1 14 0.29 4 3 1 0 0 0 0 0 0
...................................................ATGTATATGTTAATTAGGTGT....................................................................................................................................................................................................................................... 21 3 7 0.29 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATTCCGGACGAAATTCGTGA............................................................. 20 3 5 0.20 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................AGGCATGCGGGCGCTTG..................................... 17 2 5 0.20 1 0 0 1 0 0 0 0 0
........................................................AAGGTGAATTATGTG........................................................................................................................................................................................................................................ 15 1 19 0.16 3 1 2 0 0 0 0 0 0
.........................................................AGGTGAATTATGTGTGA..................................................................................................................................................................................................................................... 17 2 20 0.15 3 0 3 0 0 0 0 0 0
......................................................................................................................................................................................................................................CGAAAATGGGAAAACAAGAAG.................................................... 21 3 8 0.13 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................AGGTGATTACAAGGCCG..................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................ATATTTGTTTAGATCG................................................................................................ 16 1 13 0.08 1 0 0 1 0 0 0 0 0
.........................................................AGGTTATTTATGTGTGAA.................................................................................................................................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0 0 0 0
.......................................................AAAGTTGAATTATGTGTG...................................................................................................................................................................................................................................... 18 2 18 0.06 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AGGCATGCGGGCGCTTGC.................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.........................................................AGGTTAATTATGTGC....................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CTAAATGTCATGCGGT........................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
....................................................TGTATATGTTAATTAGGTGT....................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................AGTGGTGATCACAAG......................................................................................................................... 15 2 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 02:12 AM