ID:

dsi_3499

 Coordinate:

2r:12661055-12661204 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.5 -17.3

Flybase annnotation

five_prime_UTR [2r_12661205_12661212_+]; CDS [2r_12661213_12661368_+]; exon [2r_12661205_12661368_+]; intron [2r_12660554_12661204_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCGAGTGTGTGTGTGGCTTTTTCATTTTGATAATTTTTTGAACAGGCGCTCGTTCAGTTTTCGCGAATATATAAAACAGAACGGCTGACTCGGGTTCGGAATCGAAAATTGTATTCGGATTCAGAATCGGACTCGGAATCCTCGGGCATCCGCTGCACTTGCATTGCATCTAGCTACAGTTTGATTTTGCCTTTTGCAGAACTTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
**********************************************************************...............((((.((.(((((.((((((((.......))).))))).))))).)).)))).....************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 O001
Testis
 SRR553488
RT_0-2 hours eggs
........................................................................................................................TTCAGAATCGGACTCGGAATCC............................................................................................................ 22 0 1 8.00 8 1 7 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTCAGAATCGGACTCGGAATC............................................................................................................. 21 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAGAATCGGACTCGGAATCCTCGGGC...................................................................................................... 26 0 1 6.00 6 4 0 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAGAATCGGACTCGGAATCCTCGGG....................................................................................................... 25 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAGAATCGGACTCGGAATCCTCGGGC...................................................................................................... 27 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TTGTATTCGGATTCAGAAT.......................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAACTTCCAATGACGACGATTCGCA.......................... 25 1 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGGC...... 23 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0
...........................................................................................................................AGAATCGGACTCGGAATCC............................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAACTTCCAATGACGACGATTCGCAAGAAA..................... 30 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCCAATGACGACGATTCGCAAGAAA..................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................AATCGGACTCGGAATCCTCGGG....................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CAAGAAATTGGTAATTGTCGGCGACG.. 26 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................................................................................................................TTCGCAAGAAATTGGTAATTGTCGGC...... 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................TATAAAACAGAACGGCTGACT............................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CGGGTGACCCGGGTTCGG...................................................................................................................................................... 18 2 2 1.50 3 0 0 0 0 0 0 0 0 0 1 0 0 2
.....................................................................................................................................................................................................................................TTGGTAATTGTCGGCG..... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................AAATTGTATTCGGATTCAGAATCGGACT.................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GATTCAGAATCGGACTCGGAATCCT........................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTTTGATTTTGCCTTTTGCA................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTCCAATGACGAC.................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................TCAGAATCGGACTCGGAATC............................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGACGGT 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................AACGGCTGACTCGGATTCGT...................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................AGAATCGGACTCGGAATCCTCGGGCATC................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGG....... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGCAAGAAATTGGTAATTGTC......... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................CGGATTCAGAATCGGACTC................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAAATTTGTAATTGTCGGCGAC... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CAGAATCGGACTCGGAATC............................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AATCGGACTCGGAATCCTCGGGC...................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GCCTTTTGCAGAACTTCCAATGACGAC.................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................TTCGCGAATATATAAAACAGAAC....................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AATTGGTAATTGTCGGCGA.... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGCGAATATATAAAACAGAAC....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGCAAGAAATTGGTAATTG........... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................CCATTTTGATAATTTTTTGAACAGGCGCT....................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................CGGACTCGGAATCCTCGGGC...................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGCGAATATATAAAACAGAACGGCT................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TCGGAATCGAAAATTGTATTCGGATT................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATCCTCGGGCATCCGCTGCACTTG........................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................AAAACAGAACGGCTGACTCGGGGTT........................................................................................................................................................ 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAGAAATTGGTAATTGTCGGCGAC... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCGGC...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGAATCGGACTCGGAATCCTCGGGCA..................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCGGACTCGGAATCCTCGGGC...................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTGCCTTTTGCAGAACTTCC........................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................ATATAAAACAGAACGGCTGACT............................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATTCGGATTCAGAATCGCACTC................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGC...... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................ATCGGACTCGGAATCCTCGGCCATC................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGAATCGGACTCGAAATCCTCGGGC...................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGAATCGGACTCGGAATCCTCGGGC...................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGAATCGGACTCGGAATCCT........................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TCAGAATCGGACTCGGAATCC............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TGACGACGATTCGCAAGAAATTGGT................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AAATTGTATTCGGATTCAGAATCGGACTC................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................AAAACAGAACGGCTGACTCGGGTTC........................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................ATATATAAAACAGAACGGCT................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATTCAGAATCGGACTCGGAAT.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTTTGATTTTGCCTTTTGCAGAA................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GAATCGGACTCGGAATCCTCGGGCATC................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CGGACTCGGAATCCTCGGGCA..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATCGGACTCGGAATCCTCGGGCATCCGC................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAACTTCCAATGACGACG................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................GCTGACTCGGGTTCGGAATCG................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................CGGACTCGGAATCCTCGGG....................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AACGGAACGGCTGACTCGGATTCGGAA.................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................AATTGTATTCGGATTCAGG............................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTTTTCGCGAATATATAAAA............................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................GGACTCGGAATCCTCGGGC...................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGAC... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................GAACGGCTGACTCGGGTTCGGAAT................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATCGGACTCGGAATCCTCGGGC...................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGACGG. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGT.......... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGG....... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................TGTTAATTTGTTGAACAGGTGCTC...................................................................................................................................................................................................... 24 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................CGGGTGACCCGGGTTCG....................................................................................................................................................... 17 2 20 0.45 9 0 0 0 0 0 1 0 0 0 7 0 0 1
..........................TGTGATAATTTTTAAAACAGGC.......................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................TCATTTTGAGAATTTTTTGTA............................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................ATTCAGAATCGGACTCAGA................................................................................................................ 19 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTGCCTTTTGTAGAA................................................ 15 1 17 0.12 2 0 0 0 0 1 1 0 0 0 0 0 0 0
...........................................................................................CGGGTTCCGAATCGA................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GCAGCGGACTCGGAATCC............................................................................................................ 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACAGAACGGATGACT............................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................GCGACTGACCCGGGTTCG....................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................TCGGGTTCGGAATCGGA............................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................CGGGTGACCCGGGTTC........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................TCGGAACCGAAAATGGT......................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
TGCGAGTGTGTGAGTGGGTTT..................................................................................................................................................................................................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACGCTCACACACACACCGAAAAAGTAAAACTATTAAAAAACTTGTCCGCGAGCAAGTCAAAAGCGCTTATATATTTTGTCTTGCCGACTGAGCCCAAGCCTTAGCTTTTAACATAAGCCTAAGTCTTAGCCTGAGCCTTAGGAGCCCGTAGGCGACGTGAACGTAACGTAGATCGATGTCAAACTAAAACGGAAAACGTCTTGAAGGTTACTGCTGCTAAGCGTTCTTTAACCATTAACAGCCGCTGCCA
************************************************************************************************************...............((((.((.(((((.((((((((.......))).))))).))))).)).)))).....********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................................................CTGCTGCTAAGCGTTCTTTAA................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................TTTTAACATAAGCCTAAGTCT............................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................CGCGAGCAAGTCAAAAGCGCTT...................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................TATTTTGTCTTGCCGACTGAG.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TGCTAAGCGTTCTTTAACCGT............... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGCTGCTAAGCGATC........................ 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................CTGCTGCTAAGCGATCCT...................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................CAGTAGGCGAGCTGAACGTA..................................................................................... 20 3 15 0.33 5 0 4 1 0 0 0 0 0 0 0
...................................................................................................................................................GTAGGCGAGCTGAACGTA..................................................................................... 18 2 10 0.20 2 0 0 0 0 0 0 0 1 1 0
........................................................................ATGTTGTCCTGCCGACT................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................AAGGGTACTTCTGCTATGC............................ 19 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................AGGTTACTGCTGTTA............................... 15 1 19 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12661005-12661254 + dsi_3499 TGC-GAGT-------GTGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAG--------GCGCTCGTTC----AGTTTTCGCGAATATATAA-----AACAGAACG------GC--TGACTCGGGTTCG------------------------------GA----------------------ATCGAAAAT-TGTATTCGGATTCAGAATCGGACTC-GGAATCCTC---GG---------------GCATCCGCTGCACTTGC-ATTG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droSec2 scaffold_1:9486536-9486785 + TGC-GAGT-------GTGTGTGTGCC-TTTTTCATTTTGATAATTTTTT--GAA-CAG--------GCGCTCGTTC----AGTTTTCGCGAATATATAA-----AACAGAACG------GC--TGACTCGGGTTCG------------------------------GA----------------------ATCGACAAT-TGTATTCGGATTCAGAATCGGACTC-GGAATCCTC---GG---------------GCATCCGCTGCACTTGC-ATTG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
dm3 chr2R:11990916-11991165 + TGC-GAGT-------GTGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAG--------GCGCTCGTTC----AGTTTTCGCGAATATATAA-----AACAGAACG------GC--TGACTCGGATTCG------------------------------GA----------------------ATCGAAAAT-TGTATTCGGATTCAGAATCGGACTC-GGAATCCTC---GG---------------GCATCCGCTGCACTTGC-ATTG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droEre2 scaffold_4845:13866406-13866656 - TGT-GTGT-------GTTTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAG-CAGCTT----CGCGCTCG--CAAATATATTTCGCAAATATATAA-----AACAGAACG------GC--AGCCTCGGATTCG------------------------------GA----------------------ATCGAAAATTTGTATTCGGATT------CGGACTG-AGAATCCTC---GG---------------GCCTCCGCTGCACTTGC-ATTG---------CA-TCTT-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droYak3 2R:16992444-16992693 - TG-----T-------GTGTGTGTGGC-TTTTTCATTTTGATAATTTTTT-TGAA-CAGCTCGCGTCGCGCTCGTTC----AGTTTTCGCGAATATATAA-----TACAGAACG------GC--TGACTCGGATTCG------------------------------GA----------------------ATCGAAAATTTGTATTCGGATT------CGGACTG-AGAATCCTC---GG---------------GCCGCCGCTGCACTTGC-ATTG---------CA-TCTT-GCTAC-AAT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droEug1 scf7180000409672:897794-898006 + A-T-GTGC-------CTGTGTGAGGC-TTTTTCATTTTGATAATTTTTTGTGAA-CAGTTTG-----------CTC----AGTTTTCGCGAATAAATTA-----AACAGAACTGAACA-AC--------------------G------------------AACC---------GGG------GA--------------------------------ATCGGA----------CTC---GG---------------GACTCTACTGCAATA---ATTG---------CAATCCT--CTTCAAAT---TT-GA-ATTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droBia1 scf7180000301506:2937780-2938005 + C-C-GTGC-------ATGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAGTTCG-----------CTC----GGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------CACC--GAGT--CGGG------GA------A-------T-CGTAGTCG-ACT---------------------CC---GG---------------GAGTCCGCTGCATCTGCGATTG---------CAATCTA--GTAC-AAT---TTCGAATTTT------GCCTCTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droTak1 scf7180000415795:566326-566535 - ------GC-------ATGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAGTTCG-----------CTC----AGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AACC---------GGGGACTCGGATTCGGAATCGCAA--------------------------TC-GG----------------------------AATCATCTGCATT----ATTG---------CA-TTTT--CTAC-AAT---T------TTT------GCCTTTTGCAGAAC----TCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droEle1 scf7180000491107:1002226-1002428 + CGT---GC-------CTGTGTGTGGC-TTTTTCATTTTGATAATTTT-T--GAA-CAGTTTG-----------CTC----AGTTTTCGCGAACAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AAC----------GGGAATTCGGATTCGG--------------------------------------------------------------------CCCTACTGCACA----ATTG---------CA-TCTT--CTAC-AAT---TT-GA-TTTT------GCTTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGT
droRho1 scf7180000779911:105225-105426 - T----------------GTGTGTGGC-TTTTTCATTTTGATAATTTT----GAA-CAGTTTG-----------CTC----AGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AAC----------GGGAACTCGGATTCGG--------------------ATT------CGG-----------------------------------ACCCTACTGCACT----GTTG---------CA-TCTT--CTAC-AAT---TT-GA-TTTT------GCCT-TTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droFic1 scf7180000453948:1238724-1238941 + TACTGTGG-------ATGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAGCTCG-----------CTC----GGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AAAC---------GGGCACACGGAATCGGAA-----------------------------------------CTC---GG---------------GACTCCACTGCATTT---TTTG---------CA-ACTT--GTAC-AAT---TT-GC-CTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droKik1 scf7180000302476:2688470-2688700 + TGC-GTGTGCCTTGCCTGTGTGTGGC-TTTTTCATTTCGATAATTTC----GAA-CAGCTCG-------------C----AGTTTTCGCGAATAAATTA-----AACAGAAT-----AAGC--------------------GAGCGGACTCTGTGCAGCA-----------GCGGCAAC------------------ATTAGCA-----------------------------CC---AG---------------CAGTTCGTTGCATTA---TTTG---------CA-TCCC--CCACCAAT---GT-GC-CTTTCCCTTTGC--TTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droAna3 scaffold_13266:15415369-15415587 - ------GT-------GTTTGTGTGGC-TTTTTAATTTTGATAATTTT----GAA-CAGCTCG-----------CGC----AGTTTTCGCGAATAAATTA-----ATCAGCACTGAACAAACGGTG----------G--GGCGA--GAACTGTGAACAGCGAACTGCGGGTTGCGGGAAT------------------AAA------------------------------------------------------------GGCTGCAATTGC-AA-----CTACTGCA-TCTT--CTCA-AA-----------------------TTTTGCAGAAT---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droBip1 scf7180000396547:1633833-1634038 + T--------------TTGTGTGTGGC-TTTTTAATTTTGATAATTTT----GAA-CAGCTCG-----------AGC----AGTTTTCGCGAATAAATTA-----ATCAGCACTGAACAAACGCTG---------------CGA--GAATTGCGAGAAGAG-----------GAGGGAAT------------------AAA------------------------------------------------------------GGCTGCAACT---ATTGCAACTACTGCA-TCT---------------------TCT------GAATTTTGCAGAAT---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
dp5 3:18607159-18607363 + TGC-GCCT-------CTGTGTGTTTCATTTTTCATTTTGATAATTTT----GAA-CAGCTCG-----------CGC----AGTTTTCGCGAATAAATCAAATCAAACAGAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------CAGAAGAA-CG---------------------------TGCTGC-CTAGT-ATTG---------CA-TCC-----AC-ACTCTCTT-CC-TTTT------GCCA-TTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droPer2 scaffold_34:553492-553696 + TGC-GCCT-------GTGTGTGTTTCATTTTTCATTTTGATAATTTT----GAA-CAGCTCG-----------CGC----AGTTTTCGCGAATAAATCAAATCAAACAGAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------CAGAAGAA-CG---------------------------TGCTGC-CTAGT-ATTG---------CA-TCC-----AC-ACTCTCTT-CC-TTTT------GCCA-TTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
droWil2 scf2_1100000004954:1607878-1607936 + T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGAATTGTTCCAAATGACGACGATCCGCAAGAAACTGGTAATTGTTGGCGATGGT
droVir3 scaffold_12875:17453249-17453432 + TGT-CTGT-------GTGTGTATGGC-TTTTTCACATTGATATTTTT----CAACCAGCTCG-----------CGC----AGTTTTCGCAAATATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGTCGTCGTCGGCG-TT------------GTTG---------CA-TCTG-------------------CTCT------GCCACTTTCAGAAC---CTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGT
droMoj3 scaffold_6496:10554855-10555038 - TGT-GTGT-------GTGTGTATGGC-TTTTTCACTTTGATATTTTT----CAACGAGCTCG-----------CGC----AATTTTCGCAAATATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGCCGCTGTCGGTG-TC------------GTTG---------CA-TCC------------------A-CTCT------GCCACTTCCAGAAC---CTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGT
droGri2 scaffold_15245:16965673-16965874 + TG-----T-------ATTTCTGTGTT-TTTTTCACTTTGATATTTTTTT--CAAGCAGCTCG-----------CGC----AGTTTTCGCAAATAAATTA-----AACAGAACGCATCG------------CATCGCCG--CC------------------AA------------------------------------------------------------C---------GTCGTCC---------GTCGTCG---------------GTGTTTG---------CA-TCTTTGCTAC-TCT---CT-GCTCTCT------GCCAATTCCAGAAC---CTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGC-GAGT-------GTGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAG--------GCGCTCGTTC----AGTTTTCGCGAATATATAA-----AACAGAACG------GC--TGACTCGGGTTCG------------------------------GA----------------------ATCGAAAAT-TGTATTCGGATTCAGAATCGGACTC-GGAATCCTC---GG---------------GCATCCGCTGCACTTGC-ATTG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCC.........................................................................................................................................................2218.00871000000000000000
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATC..........................................................................................................................................................2116.00624000000000000000
....................................................................................................................................................................................................................CAGAATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2616.00604110000000000000
....................................................................................................................................................................................................................CAGAATCGGACTC-GGAATCCTC---GG---------------G..................................................................................................................................2514.00412100000000000000
...................................................................................................................................................................................................................TCAGAATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2713.00301200000000000000
......................................................................................................................................................................................................T-TGTATTCGGATTCAGAAT........................................................................................................................................................................1912.00220000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGGC......2312.00200000000000101000
.....................................................................................................................................................................................................................AGAATCGGACTC-GGAATCC.........................................................................................................................................................1912.00220000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTCCAATGACGACGATTCGCAAGAAA.....................2612.00200000002000000000
.......................................................................................................................................................................................................................AATCGGACTC-GGAATCCTC---GG---------------G..................................................................................................................................2212.00202000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CAAGAAATTGGTAATTGTCGGCGACG..2612.00200000000000020000
..................................................................................................................................................................................................................................................................................................................................................................TTCGCAAGAAATTGGTAATTGTCGGC......2612.00200000020000000000
..............................................................................................TATAA-----AACAGAACG------GC--TGACT..................................................................................................................................................................................................................................................................2112.00220000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGGTAATTGTCGGCG.....1611.00100000000001000000
...................................................................................................................................................................................................AAAT-TGTATTCGGATTCAGAATCGGACT..................................................................................................................................................................2811.00101000000000000000
................................................................................................................................................................................................................GATTCAGAATCGGACTC-GGAATCCT........................................................................................................................................................2511.00101000000000000000
.............................................................................................................................................................................................................................................................................................................GT---TT-GA-TTTT------GCCTTTTGCA......................................................2011.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................TGCAGAAC---TTCCAATGACGAC..................................2111.00100000000000001000
...................................................................................................................................................................................................................TCAGAATCGGACTC-GGAATC..........................................................................................................................................................2011.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGACGGT2611.00100000001000000000
.....................................................................................................................................................................................................................AGAATCGGACTC-GGAATCCTC---GG---------------GCATC..............................................................................................................................2811.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGG.......2211.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TTCGCAAGAAATTGGTAATTGTC.........2311.00100000000001000000
..............................................................................................................................................................................................................CGGATTCAGAATCGGACTC-................................................................................................................................................................1911.00100100000000000000
....................................................................................................................................................................................................................CAGAATCGGACTC-GGAATC..........................................................................................................................................................1911.00110000000000000000
.......................................................................................................................................................................................................................AATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2311.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................GCCTTTTGCAGAAC---TTCCAATGACGAC..................................2711.00100100000000000000
....................................................................................TTCGCGAATATATAA-----AACAGAAC..................................................................................................................................................................................................................................................................................2311.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AATTGGTAATTGTCGGCGA....1911.00101000000000000000
......................................................................................CGCGAATATATAA-----AACAGAAC..................................................................................................................................................................................................................................................................................2111.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTG...........1911.00101000000000000000
..........................................................................................................................................................................................................................CGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2011.00110000000000000000
......................................................................................CGCGAATATATAA-----AACAGAACG------GC--T......................................................................................................................................................................................................................................................................2511.00101000000000000000
.....................................................................................................................................TCG------------------------------GA----------------------ATCGAAAAT-TGTATTCGGATT..............................................................................................................................................................................2611.00101000000000000000
.....................................................................................................................................................................................................................................ATCCTC---GG---------------GCATCCGCTGCACTTG...................................................................................................................2411.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................AAGAAATTGGTAATTGTCGGCGAC...2411.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCGGC......2411.00101000000000000000
.....................................................................................................................................................................................................................AGAATCGGACTC-GGAATCCTC---GG---------------GCA................................................................................................................................2611.00100100000000000000
.........................................................................................................................................................................................................................TCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................TT------GCCTTTTGCAGAAC---TTCC...........................................2011.00100001000000000000
.............................................................................................ATATAA-----AACAGAACG------GC--TGACT..................................................................................................................................................................................................................................................................2211.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGC......2511.00100000010000000000
.....................................................................................................................................................................................................................AGAATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2511.00100010000000000000
.....................................................................................................................................................................................................................AGAATCGGACTC-GGAATCCT........................................................................................................................................................2011.00100100000000000000
...................................................................................................................................................................................................................TCAGAATCGGACTC-GGAATCC.........................................................................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATTCGCAAGAAATTGGT................2511.00100000010000000000
...................................................................................................................................................................................................AAAT-TGTATTCGGATTCAGAATCGGACTC-................................................................................................................................................................2911.00100010000000000000
.................................................................................................AA-----AACAGAACG------GC--TGACTCGGGTTC...........................................................................................................................................................................................................................................................2511.00100100000000000000
...........................................................................................ATATATAA-----AACAGAACG------GC--T......................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................................................................................................................ATTCAGAATCGGACTC-GGAAT...........................................................................................................................................................2111.00101000000000000000
.............................................................................................................................................................................................................................................................................................................GT---TT-GA-TTTT------GCCTTTTGCAGAA...................................................2311.00100100000000000000
......................................................................................................................................................................................................................GAATCGGACTC-GGAATCCTC---GG---------------GCATC..............................................................................................................................2711.00101000000000000000
..........................................................................................................................................................................................................................CGGACTC-GGAATCCTC---GG---------------GCA................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................ATCGGACTC-GGAATCCTC---GG---------------GCATCCGC...........................................................................................................................2811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................AGAAC---TTCCAATGACGACG.................................1911.00100001000000000000
.......................................................................................................................GC--TGACTCGGGTTCG------------------------------GA----------------------ATCG................................................................................................................................................................................................2111.00100000000001000000
..........................................................................................................................................................................................................................CGGACTC-GGAATCCTC---GG---------------G..................................................................................................................................1911.00110000000000000000
....................................................................................................................................................................................................AAT-TGTATTCGGATTCAGG..........................................................................................................................................................................1911.00101000000000000000
.................................................................................GTTTTCGCGAATATATAA-----AA........................................................................................................................................................................................................................................................................................2011.00100000000001000000
...........................................................................................................................................................................................................................GGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGAC...2311.00100100000000000000
............................................................................................................GAACG------GC--TGACTCGGGTTCG------------------------------GA----------------------AT..................................................................................................................................................................................................2411.00101000000000000000
........................................................................................................................................................................................................................ATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2211.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGACGG.2511.00100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGT..........2111.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGG.......2411.00100000001000000000
droSec2
TGC-GAGT-------GTGTGTGTGCC-TTTTTCATTTTGATAATTTTTT--GAA-CAG--------GCGCTCGTTC----AGTTTTCGCGAATATATAA-----AACAGAACG------GC--TGACTCGGGTTCG------------------------------GA----------------------ATCGACAAT-TGTATTCGGATTCAGAATCGGACTC-GGAATCCTC---GG---------------GCATCCGCTGCACTTGC-ATTG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................CAGAATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2614.0041120
..................................................................................................A-----AACAGAACG------GC--TGACTCGGGTTCG------------------------------GA----------------------....................................................................................................................................................................................................2712.0021100
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTCGGC......2812.0020200
.......................................................................................................................GC--TGACTCGGGTTCG------------------------------GA----------------------ATCGA...............................................................................................................................................................................................2211.0011000
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCCT........................................................................................................................................................2311.0010100
...........................................................................................ATATATAA-----AACAGAACG------GC--T......................................................................................................................................................................................................................................................................2011.0010100
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGA.............................................................................................................................................................1811.0011000
................................................................................................................G------GC--TGACTCGGGTTCG------------------------------GA----------------------ATCGA...............................................................................................................................................................................................2311.0011000
.......................................ATAATTTTTT--GAA-CAG--------GCGCT...........................................................................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................................AATCGGACTC-GGAATCCTC---GG---------------G..................................................................................................................................2211.0010001
................................................................................................................................................................................................................GATTCAGAATCGGACTC-GGA.............................................................................................................................................................2011.0010100
.....................................................................................................................................................................................................................................ATCCTC---GG---------------GCATCCGCTGCACTTG...................................................................................................................2411.0011000
..............................................................................................................................................................................................................................................................................................................................................AC---TTCCAATGACGACGATTCGC...........................2211.0010010
.......................................................................................................................................................................................................................................................................................................................................................................AAGAAATTGGTAATTGTCGG.......2011.0010100
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCGACG..2411.0010100
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCG........2211.0010010
...............................................................................................ATAA-----AACAGAACG------GC--TGACTCGGGTT............................................................................................................................................................................................................................................................2611.0010100
.................................................................................................................................................................................................GACAAT-TGTATTCGGATT..............................................................................................................................................................................1811.0010010
................................................................................................................................................................................................CGACAAT-TGTATTCGGATTCAG...........................................................................................................................................................................2211.0010100
...........................................................................................ATATATAA-----AACAGAACG------GC--TGACTCGG...............................................................................................................................................................................................................................................................2711.0010100
...........................................................................................................................................................................................................................................................................................................................................................................AATTGGTAATTGTCGGCGAC...2011.0010100
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGC......2511.0011000
.......................................................................................................................................G------------------------------GA----------------------ATCGACAAT-TGTATTCGGATTCAG...........................................................................................................................................................................2711.0011000
...............................................................................................ATAA-----AACAGAACG------GC--TGACTCGGGT.............................................................................................................................................................................................................................................................2511.0010100
.....................................................................................................................................................................................................................................ATCCTC---GG---------------GCATCCGCTGCACTT....................................................................................................................2311.0010100
.....................................................................................................................................................................................................................................ATCCTC---GG---------------GCATCCGCTGCA.......................................................................................................................2011.0010010
...............................................................................................ATAA-----AACAGAACG------GC--TGA....................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................GC--TGACTCGGGTTCG------------------------------GA----------------------ATC.................................................................................................................................................................................................2011.0011000
.....................................................................................................................................................................................................AT-TGTATTCGGATTCAGAATCGGA....................................................................................................................................................................2411.0010010
........................................................................................................................................................................................................................................................................................................................................................ATGACGACGATTCGCAAGAA......................2011.0010010
........................................................................................................AACAGAACG------GC--TGACTCGGGTT............................................................................................................................................................................................................................................................2211.0011000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTA...............1911.0011000
...........................................................................................................AGAACG------GC--TGACTCGGGT.............................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................................................................ATTCGCAAGAAATTGGTAATTGTCGGC......2711.0011000
........................................................................................................AACAGAACG------GC--TGACTCGG...............................................................................................................................................................................................................................................................1911.0010100
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTC.........2111.0010100
........................................................................................CGAATATATAA-----AACAGAACG------G..........................................................................................................................................................................................................................................................................2111.0010100
........................................................................................................................................................................................................................ATCGGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................2211.0010100
........................................................................................................................................................................................................................................................................................................................................................ATGACGACGATTCGCAAGAAATTG..................2411.0011000
..................................................................................................................................................................................................................................................................................................................................GCCTTTTGCAGAAC---TTCCAATGACGACG.................................2811.0010100
..................................................................................................A-----AACAGAACG------GC--TGACTCG................................................................................................................................................................................................................................................................1911.0010010
dm3
TGC-GAGT-------GTGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAG--------GCGCTCGTTC----AGTTTTCGCGAATATATAA-----AACAGAACG------GC--TGACTCGGATTCG------------------------------GA----------------------ATCGAAAAT-TGTATTCGGATTCAGAATCGGACTC-GGAATCCTC---GG---------------GCATCCGCTGCACTTGC-ATTG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCCT........................................................................................................................................................23133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000002000000000000000000110000001000000000000000000000000000000000000201114101420200000002001220
........................................................................................................AACAGAACG------GC--TGACTCG................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000002000000000000000020000000000000000000000100000000001000000000000000
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCC.........................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000100000000000000000000000000000000001000110000010000000100
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCCTC---....................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001010000100000000000001000000000000000000000000000000000000000000000000000000000000010001100000000000000000000
.......................................................................................................................GC--TGACTCGGATTCG------------------------------GA----------------------ATCG................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000001000000000100000000000000000000000000000000010000000000000000000000
........................................................................................................AACAGAACG------GC--TGACTCGGAT.............................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000020000000000012000
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.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATTCGCAAGAAATTGGT................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................AG--------GCGCTCGTTC----AGTTTTCGC.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................ATTCGGATTCAGAATCGGACTC-................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGCGCT...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTG...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACTCGGATTCG------------------------------GA----------------------ATCGAAAAT-TGT.......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CATCCGCTGCACTTGC-ATTG---------C...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GA----------------------ATCGAAAAT-TGTATTCGGA................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ACAGAACG------GC--TGACTCGG...............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CGAATATATAA-----AACAGAACG------GC--T......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................ACG------GC--TGACTCGGATTCG------------------------------GA----------------------ATCGAA..............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................TATATAA-----AACAGAACG------GC--T......................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................CAGAATCGGACTC-GGAATCC.........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CTCGGATTCG------------------------------GA----------------------ATCGAAAAT-TGTAT.....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CCAATGACGACGATTCGCAAGAAATT...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TTTTGCAGAAC---TTCCAATGA......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTCCAATGACGACGATTCGC...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................C-AGT---TT-GA-TTTT------GCCTTTTG........................................................2011.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................A-----AACAGAACG------GC--TGACTCGGAT.............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CCAATGACGACGATTCGC...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................GAACG------GC--TGACTCGGATTCG------------------------------G...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................AACG------GC--TGACTCGGATTCG------------------------------GA----------------------AT..................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TTCG------------------------------GA----------------------ATCGAAAAT-TGTATTCGGA................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTCGGATTCAGAATCGGACTC-................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................ACG------GC--TGACTCGGATTCG------------------------------............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAAT....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................GGACTC-GGAATCCTC---GG---------------GC.................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TCCAATGACGACGATTCGCAAGAAAT....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCCTA---T...................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................TTCAGAATCGGACTC-GGAATCCA........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................................................................................................................................................................................................................................TG---------CA-TCTA-GCTAC-AGT---TT-GA-TTTT------GCC.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CGGACTC-GGAATCCTC---GG---------------GCATCC.............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGGTAATTGTCGGCGACGG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................T-GA-TTTT------GCCTTTTGCAGAAT---...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ATCCTC---GG---------------GCATCCGCTGCAC......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CAGAATCGGACTC-GGAATCCT........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................ACAGAACG------GC--TGACTCGGATT............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................ACG------GC--TGACTCGGATTCG------------------------------GA----------------------....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................ACTCGGATTCG------------------------------GA----------------------ATCGAAAAT-..........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GC--TGACTCGGATTCG------------------------------GA----------------------AT..................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
droEre2
TGT-GTGT-------GTTTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAG-CAGCTT----CGCGCTCG--CAAATATATTTCGCAAATATATAA-----AACAGAACG------GC--AGCCTCGGATTCG------------------------------GA----------------------ATCGAAAATTTGTATTCGGATT------CGGACTG-AGAATCCTC---GG---------------GCCTCCGCTGCACTTGC-ATTG---------CA-TCTT-GCTAC-AGT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................C---TTCCAATGACGACGATTCGCT..........................2213.0030000003
....................................................................................................................................................................................................AATTTGTATTCGGATT------CGGA....................................................................................................................................................................2012.0021000010
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTA...............1911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................TGGTAATTGTCGGCGACGG.1911.0010000100
..................................................................................................................................................................................................AAAATTTGTATTCGGATT------CGGACTG-................................................................................................................................................................2511.0010000100
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTC.........2511.0011000000
..............................................................................................................................................................................................................................CTG-AGAATCCTC---GG---------------GCCTCC.............................................................................................................................2011.0011000000
.....................................................................................................................................................................................................ATTTGTATTCGGATT------CGGA....................................................................................................................................................................1911.0010000010
...............................................................................................ATAA-----AACAGAACG------GC--AGCCTCGG...............................................................................................................................................................................................................................................................2311.0010000100
...............................................................................................ATAA-----AACAGAACG------GC--AGCCTCG................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCGGC......2411.0010000100
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGT..........2411.0011000000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATTGGT................2711.0010000010
.............................................................................................ATATAA-----AACAGAACG------GC--AGC....................................................................................................................................................................................................................................................................2011.0010000010
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTCGGC......2811.0010000100
droYak3
TG-----T-------GTGTGTGTGGC-TTTTTCATTTTGATAATTTTTT-TGAA-CAGCTCGCGTCGCGCTCGTTC----AGTTTTCGCGAATATATAA-----TACAGAACG------GC--TGACTCGGATTCG------------------------------GA----------------------ATCGAAAATTTGTATTCGGATT------CGGACTG-AGAATCCTC---GG---------------GCCGCCGCTGCACTTGC-ATTG---------CA-TCTT-GCTAC-AAT---TT-GA-TTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGGC......2313.00300100020000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATT...................2412.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................AATTGGTAATTGTCGGCGACGG.2212.00201000010000
...............................................................................................ATAA-----TACAGAACG------GC--TGACTC.................................................................................................................................................................................................................................................................2112.00200000020000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAA......................2112.00200000020000
............................................................................................................................................................................................................................................................................................................................................GAAC---TTCCAATGACGACGATTC.............................2212.00202000000000
...............................................................................................................................................................................................................................................................................................................................................C---TTCCAATGACGACGATTCGCAAG........................2411.00101000000000
................................................................................................................................................................................................................GATT------CGGACTG-AGAATCCTC---GG---------------GC.................................................................................................................................2411.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................ATTCGCAAGAAATTGGTAATTGTC.........2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................CCAATGACGACGATTCGCAAGAAATTG..................2711.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................ATTGGTAATTGTCGGCGACGG.2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................AAGAAATTGGTAATTGTCGGCGACG..2511.00100000010000
..............................................................................................................ACG------GC--TGACTCGGATTCG------------------------------GA----------------------....................................................................................................................................................................................................2011.00100000010000
...................................................GAA-CAGCTCGCGTCGCGCTC..........................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................................................................................................................................................................................................................................................................CTTGC-ATTG---------CA-TCTT-GCTAC-AAT---TT-GA-..........................................................................2711.00101000000000
..................................................................................................................................................................................................................................................................................................................................GCCTTTTGCAGAAC---TTCCAATG.......................................2211.00101000000000
...........................................................................................................AGAACG------GC--TGACTCGGATTCG------------------------------GA----------------------ATC.................................................................................................................................................................................................2611.00100100000000
...........................................................................................ATATATAA-----TACAGAACG------GC--T......................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................TTCCAATGACGACGATTCGCAA.........................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCGGC......2411.00100000010000
.......................................................................................................................................................................................................................................................................................................................................TTGCAGAAC---TTCCAATGACGACG.................................2311.00100000010000
.................................................................................................AA-----TACAGAACG------GC--TGACTCGG...............................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................CTTTTGCAGAAC---TTCCAATGACGACGA................................2711.00100000100000
..................................................................................................A-----TACAGAACG------GC--TGACTCGGATTCG------------------------------............................................................................................................................................................................................................................2511.00100000010000
................................................T-TGAA-CAGCTCGCGTCGCGCT...........................................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................A-----TACAGAACG------GC--TGACTCGGATTCG------------------------------GA----------------------....................................................................................................................................................................................................2711.00110000000000
.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATTCGCAAGAAATTGGT................2511.00100000010000
....................................................................................................................................................................................................................................................................................................T-GCTAC-AAT---TT-GA-TTTT------GCCTTTTG........................................................2511.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGC......2511.00100100000000
.................................................................................................AA-----TACAGAACG------GC--TGACTCGGATTC...........................................................................................................................................................................................................................................................2511.00110000000000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTC.........2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................GAAC---TTCCAATGACGACGAT...............................2011.00100000010000
................................................................................................................G------GC--TGACTCGGATTCG------------------------------GA----------------------AT..................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGG.......2411.00100000010000
.....................................................................................................................................................................................................ATTTGTATTCGGATT------CGGACTG-AGAA............................................................................................................................................................2611.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................ATTCGCAAGAAATTGGTAATTGTCGG.......2611.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGG.......2211.00101000000000
..................................................................................................................................................................................................................................................................................................................................GCCTTTTGCAGAAC---TTCCAATGACGAC..................................2711.00110000000000
.............................................................................................................................ACTCGGATTCG------------------------------GA----------------------ATCGAAAATTTGT.......................................................................................................................................................................................2611.00110000000000
..................................................................................................A-----TACAGAACG------GC--TGACTCGGA..............................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................................................C---TTCCAATGACGACGATTCGCAAGAA......................2611.00101000000000
................................................................................................................G------GC--TGACTCGGATTCG------------------------------GA----------------------ATCGAAA.............................................................................................................................................................................................2511.00101000000000
...............................................................GTCGCGCTCGTTC----AGTTTTCG..........................................................................................................................................................................................................................................................................................................2111.00110000000000
.....................................................................................................................................................................................................................................ATCCTC---GG---------------GCCGCCGCTGCAC......................................................................................................................2111.00101000000000
.................................................................................................................................................................................................GAAAATTTGTATTCGGATT------CGGACTG-AG..............................................................................................................................................................2811.00100000010000
.............................................................................................................................ACTCGGATTCG------------------------------GA----------------------ATCGAA..............................................................................................................................................................................................1911.00100000100000
......................................................................................................................................................................................................TTTGTATTCGGATT------CGGACTG-AGG.............................................................................................................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................GAAC---TTCCAATGACGACGATT..............................2111.00110000000000
.....................................................................................................................................................................................................ATTTGTATTCGGATT------CGGACTG-AG..............................................................................................................................................................2411.00100000010000
..................................................................................................A-----TACAGAACG------GC--TGACTCGGAT.............................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTA...............1911.00101000000000
..............................................................................................................................................................................................................................CTG-AGAATCCTC---GG---------------GCCG...............................................................................................................................1811.00100100000000
......................................................................................................................................................................................................TTTGTATTCGGATT------CGGACTG-AGAATC..........................................................................................................................................................2711.00100000010000
droEug1
A-T-GTGC-------CTGTGTGAGGC-TTTTTCATTTTGATAATTTTTTGTGAA-CAGTTTG-----------CTC----AGTTTTCGCGAATAAATTA-----AACAGAACTGAACA-AC--------------------G------------------AACC---------GGG------GA--------------------------------ATCGGA----------CTC---GG---------------GACTCTACTGCAATA---ATTG---------CAATCCT--CTTCAAAT---TT-GA-ATTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
droBia1
C-C-GTGC-------ATGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAGTTCG-----------CTC----GGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------CACC--GAGT--CGGG------GA------A-------T-CGTAGTCG-ACT---------------------CC---GG---------------GAGTCCGCTGCATCTGCGATTG---------CAATCTA--GTAC-AAT---TTCGAATTTT------GCCTCTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
droTak1
------GC-------ATGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAGTTCG-----------CTC----AGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AACC---------GGGGACTCGGATTCGGAATCGCAA--------------------------TC-GG----------------------------AATCATCTGCATT----ATTG---------CA-TTTT--CTAC-AAT---T------TTT------GCCTTTTGCAGAAC----TCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
droEle1
CGT---GC-------CTGTGTGTGGC-TTTTTCATTTTGATAATTTT-T--GAA-CAGTTTG-----------CTC----AGTTTTCGCGAACAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AAC----------GGGAATTCGGATTCGG--------------------------------------------------------------------CCCTACTGCACA----ATTG---------CA-TCTT--CTAC-AAT---TT-GA-TTTT------GCTTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGTSizeHit CountTotal NormTotal
No Reads
droRho1
T----------------GTGTGTGGC-TTTTTCATTTTGATAATTTT----GAA-CAGTTTG-----------CTC----AGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AAC----------GGGAACTCGGATTCGG--------------------ATT------CGG-----------------------------------ACCCTACTGCACT----GTTG---------CA-TCTT--CTAC-AAT---TT-GA-TTTT------GCCT-TTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
droFic1
TACTGTGG-------ATGTGTGTGGC-TTTTTCATTTTGATAATTTTTT--GAA-CAGCTCG-----------CTC----GGTTTTCGCGAATAAATTA-----AACAGAACTGAACG-GC--------------------G------------------AAAC---------GGGCACACGGAATCGGAA-----------------------------------------CTC---GG---------------GACTCCACTGCATTT---TTTG---------CA-ACTT--GTAC-AAT---TT-GC-CTTT------GCCTTTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
droKik1
TGC-GTGTGCCTTGCCTGTGTGTGGC-TTTTTCATTTCGATAATTTC----GAA-CAGCTCG-------------C----AGTTTTCGCGAATAAATTA-----AACAGAAT-----AAGC--------------------GAGCGGACTCTGTGCAGCA-----------GCGGCAAC------------------ATTAGCA-----------------------------CC---AG---------------CAGTTCGTTGCATTA---TTTG---------CA-TCCC--CCACCAAT---GT-GC-CTTTCCCTTTGC--TTTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
droAna3
------GT-------GTTTGTGTGGC-TTTTTAATTTTGATAATTTT----GAA-CAGCTCG-----------CGC----AGTTTTCGCGAATAAATTA-----ATCAGCACTGAACAAACGGTG----------G--GGCGA--GAACTGTGAACAGCGAACTGCGGGTTGCGGGAAT------------------AAA------------------------------------------------------------GGCTGCAATTGC-AA-----CTACTGCA-TCTT--CTCA-AA-----------------------TTTTGCAGAAT---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................AGCGAACTGCGGGTTGCG....................................................................................................................................................................................................................1812.002000002
..............................................................................................................ACTGAACAAACGGTG----------G--GGCGA--.................................................................................................................................................................................................................................................2112.002110000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTC.........2511.001000010
..........................................................................................................................................................ACAGCGAACTGCGGGTTGCGG...................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................AGAAT---TTCCAATGACGACGAT...............................2111.001001000
..........................................................................................................................................GGCGA--GAACTGTGAACAGCGAAC...............................................................................................................................................................................................................................2311.001000001
.................................................................................................................GAACAAACGGTG----------G--GGCGA--GA...............................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTC.........2011.001000010
........................................................................................................................................................GAACAGCGAACTGCGGGTTGCGGGA.................................................................................................................................................................................................................2511.001000010
..........................................................................................................................................................................................................................................................................................................................................................GACGACGATTCGCAAGAAATTG..................2211.001000010
......................................................................................................................................................GTGAACAGCGAACTGCGGGTTGCGG...................................................................................................................................................................................................................2511.001100000
.................................................................................................................GAACAAACGGTG----------G--GGCGA--GAAC.............................................................................................................................................................................................................................................2211.001010000
................................................................................................TTA-----ATCAGCACTGAACAAAC.........................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................GACGATTCGCAAGAAATTGGT................2111.001000010
...........................................................................................................................TG----------G--GGCGA--GAACTGTGAACAG....................................................................................................................................................................................................................................2111.001000010
......................................................................................................................................................GTGAACAGCGAACTGCGGGTTGCGGG..................................................................................................................................................................................................................2611.001000010
...........................................................................................................................TG----------G--GGCGA--GAACTGTGAAC......................................................................................................................................................................................................................................1911.001000001
...................................................................................................................................................................................................................................................................................................................................................TTCCAATGACGACGATTCGCA..........................2111.001000010
...........................................................................................................................................................................................................................................................................................................................................AGAAT---TTCCAATGACGAC..................................1811.001010000
......................................................................................................................................................................................................................................................................................................................................................CAATGACGACGATTCGCAAGA.......................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGGC......2311.001001000
droBip1
T--------------TTGTGTGTGGC-TTTTTAATTTTGATAATTTT----GAA-CAGCTCG-----------AGC----AGTTTTCGCGAATAAATTA-----ATCAGCACTGAACAAACGCTG---------------CGA--GAATTGCGAGAAGAG-----------GAGGGAAT------------------AAA------------------------------------------------------------GGCTGCAACT---ATTGCAACTACTGCA-TCT---------------------TCT------GAATTTTGCAGAAT---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotal
No Reads
dp5
TGC-GCCT-------CTGTGTGTTTCATTTTTCATTTTGATAATTTT----GAA-CAGCTCG-----------CGC----AGTTTTCGCGAATAAATCAAATCAAACAGAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------CAGAAGAA-CG---------------------------TGCTGC-CTAGT-ATTG---------CA-TCC-----AC-ACTCTCTT-CC-TTTT------GCCA-TTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGG.......2213.0030300000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGGC......2313.0031200000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGG.......1912.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCGG.......2312.0020200000000
...............................................................................................................................................................................................................................................................................................................................................C---TTCCAATGACGACGATTCGC...........................2112.0020200000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGT..........2112.0020200000000
.........................................................................................................................................................................................................................................................................................................AC-ACTCTCTT-CC-TTTT------GCCA-T..........................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGT..........1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGT..........2011.0010100000000
...............................................................................................ATCAAATCAAACAGAAC---------------TCGGATTTC..........................................................................................................................................................................................................................................................2611.0011000000000
.....................................................................................................................................................................................................................................................................................................................CC-TTTT------GCCA-TTGCAGAAC---TTCCAAT........................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................................................TTGCAGAAC---TTCCAATGACGACGATTC.............................2711.0010100000000
...............................................................................................................................................................................................................................................................................................A-TCC-----AC-ACTCTCTT-CC-TTTT------GCC.............................................................2311.0010100000000
................................................................................................................................................................................................................................GAAGAA-CG---------------------------TGCTGC-CTAGT-ATTG---------CA-TC...............................................................................................2711.0010100000000
.................................................................................................................................................................A------------------------------------------------------------CAGAAGAA-CG---------------------------TGCTGC-CTAG...................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................CAGAAGAA-CG---------------------------TGCTGC-CTAGT-ATT..............................................................................................................2411.0010000001000
.......................................................CAGCTCG-----------CGC----AGTTTTCGCGA.......................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGGCGAC...2611.0010100000000
...................................................................................................................................................................................................................................GAA-CG---------------------------TGCTGC-CTAGT-ATTG---------C...................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................AAC---TTCCAATGACGACGATT..............................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGGTAATTGTCGGCGACG..1911.0010000010000
...............................................................................................................................................................................................................................................................................................................................................C---TTCCAATGACGACGATTC.............................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGCG.....2111.0010000000010
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTA...............1911.0010100000000
.....................................................................................................................................................................................................................................................................................................................................A-TTGCAGAAC---TTCCAATGACGAC..................................2311.0010100000000
............................................................................................................GAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------C...................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTCGGC......2811.0010100000000
.................................................................................................................................................................................................................................................................................................TCC-----AC-ACTCTCTT-CC-TTTT------GC..............................................................2111.0010010000000
........................................................................................................AACAGAAC---------------TCGGATTTCGA--C.....................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................ACGACGATTCGCAAGAAATTG..................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................TTGCAGAAC---TTCCAATGACGAC..................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................TGCAGAAC---TTCCAATGACGAC..................................2111.0010100000000
...........................................................................................ATAAATCAAATCAAACAGAA...................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................GAA-CG---------------------------TGCTGC-CTAGT-ATTG---------CA-TCC-----A........................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................GAAC---TTCCAATGACGACGATTC.............................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................AAC---TTCCAATGACGACGAT...............................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................ATGACGACGATTCGCAAGAAATTGGTA...............2711.0010100000000
.................................................................................................................................................................................................................................................................................................................CTT-CC-TTTT------GCCA-TTGCAGAAC---TTCCA..........................................2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTCGG.......2711.0010100000000
..............................................................................................................................................................................................................................................................................................................................................AC---TTCCAATGACGACGATT..............................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................AC---TTCCAATGACGACGATTCGC...........................2211.0010100000000
...................................................................................................AATCAAACAGAAC---------------TCGGATTTCGA--......................................................................................................................................................................................................................................................2411.0010100000000
droPer2
TGC-GCCT-------GTGTGTGTTTCATTTTTCATTTTGATAATTTT----GAA-CAGCTCG-----------CGC----AGTTTTCGCGAATAAATCAAATCAAACAGAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------CAGAAGAA-CG---------------------------TGCTGC-CTAGT-ATTG---------CA-TCC-----AC-ACTCTCTT-CC-TTTT------GCCA-TTGCAGAAC---TTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................A-TTGCAGAAC---TTCCAATGACGAC..................................2313.003300000
................................................................................................................................CGGATTTCGA--CG------------------AA------------------------------------------------------------CAGAAGAA-CG---------------------------TGCT..........................................................................................................................2813.003300000
...........................................................................................................AGAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------CAGA................................................................................................................................................................2412.002200000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGC......2512.002200000
................................................................................................................................CGGATTTCGA--CG------------------AA------------------------------------------------------------CAGA................................................................................................................................................................1812.002200000
...............................................................................................................................................................................................................................................................................................................................................................................GGTAATTGTCGGCGACGG.1811.001010000
......................................................................................................CAAACAGAAC---------------TCGGATTTCGA--......................................................................................................................................................................................................................................................2111.001010000
.................................................................................................CAAATCAAACAGAAC---------------TCGGAT.............................................................................................................................................................................................................................................................2111.001010000
...............................................................................................................................................................................................................................................................................................A-TCC-----AC-ACTCTCTT-CC-TTTT------................................................................2011.001001000
..................................................................................................................................................................................................................................................................................................................................................................TTCGCAAGAAATTGGTAATTGTCGGC......2611.001100000
......................................................................................................CAAACAGAAC---------------TCGGATTTC..........................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................TTGGTAATTGTCGGCGACGG.2011.001100000
........................................................................................................................................GA--CG------------------AA------------------------------------------------------------CAGAAGAA-CG---------------------------TG............................................................................................................................1811.001000010
...................................................................................................AATCAAACAGAAC---------------TCGGA..............................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................AAGAAATTGGTAATTGTCGG.......2011.001000001
..............................................................................................................................................................................................................................CAGAAGAA-CG---------------------------TGCTGC-CTA....................................................................................................................1911.001010000
...........................................................................................ATAAATCAAATCAAACAGAAC---------------TCGGAT.............................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................TT-CC-TTTT------GCCA-TTGCAGAAC---...............................................2111.001010000
...........................................................................................................AGAAC---------------TCGGATTTCGA--CG------------------AA------------------------------------------------------------CAGG................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................GACGATTCGCAAGAAATTG..................1911.001010000
droWil2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAGAATTGTTCCAAATGACGACGATCCGCAAGAAACTGGTAATTGTTGGCGATGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................GTTCCAAATGACGACGATCCGCAAGA.......................2611.00101000
.......................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGGTAATTGTTGG.......2011.00100100
.................................................................................................................................................................................................................................................................................................................................................GTTCCAAATGACGACGATCCGCAAG........................2511.00110000
.........................................................................................................................................................................................................................................................................................................................................................................GAAACTGGTAATTGTTGGCGATG..2311.00101000
.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATCCGCAAGAAACTGG.................2411.00101000
................................................................................................................................................................................................................................................................................................................................................TGTTCCAAATGACGACGATCCGCAAGA.......................2711.00100010
.............................................................................................................................................................................................................................................................................................................................................................................CTGGTAATTGTTGGCGATG..1911.00100010
......................................................................................................................................................................................................................................................................................................................................................AAATGACGACGATCCGCAA.........................1911.00100010
........................................................................................................................................................................................................................................................................................................................................................ATGACGACGATCCGCAAGA.......................1911.00100100
.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATCCGCAAGAAACTGGT................2511.00100001
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAACTGGTAATTGTT.........2011.00110000
..................................................................................................................................................................................................................................................................................................................................................TTCCAAATGACGACGATCCGCAAG........................2411.00101000
droVir3
TGT-CTGT-------GTGTGTATGGC-TTTTTCACATTGATATTTTT----CAACCAGCTCG-----------CGC----AGTTTTCGCAAATATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGTCGTCGTCGGCG-TT------------GTTG---------CA-TCTG-------------------CTCT------GCCACTTTCAGAAC---CTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CG..................................................................................................................................................18116.00166100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CGTCGTCGGCG-TT------------GTTG---------CA-T................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000004
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGT.................................................................................................................................................1914.004100000000000000000000000000000010000000000000000000000000000200
.....................................................................................................................................................................................................................................................GTCGTCGTCGGCG-TT------------GTTG---------CA-TCTG-------------------CTCT------................................................................2913.003000000000000000000000000000000000000000000000000000000000000003
..........................................................................................................................................................................................................................................................................................................................................................GACGACGATTCGCAAGAAATTGGT................2412.002000000000000000100000000000000000000100000000000000000000000000
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTC................................................................................................................................................2012.002000000000000000000000000000000000000000100000000000000000000010
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGC..............................................................................................................................................2212.002110000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AAC---CTCCAATGACGACGATTCG............................2212.002000000000000000000002000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATTG..................2511.001000000000000000000000000000000001000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTCGGC......2511.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTTCAGAAC---CTCCAATGACGACG.................................2311.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCG...............................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AATTGGTAATTGTCGGCG.....1811.001000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GTTG---------CA-TCTG-------------------CTCT------GCCACT..........................................................2011.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAA..............2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AAATTGGTAATTGTCGGC......1811.001000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................ACTTTCAGAAC---CTCCAATGACGA...................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GAAC---CTCCAATGACGACGATTCGC...........................2411.001000000000000000000000000000000000001000000000000000000000000000
........................................................................................CAAATATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------C...................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................ATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CG..................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAA......................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTCGG.......2211.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................AAATTGGTAATTGTCGGCGATGGT2411.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................CAGAAC---CTCCAATGACGAC..................................1911.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTA...............1911.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CGATTCGCAAGAAATTGGT................1911.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................G---------CA-TCTG-------------------CTCT------GCCACTTTCAG.....................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATTCGCAAGAAAT....................2111.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................AACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGTCGT........................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................ATATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGT.................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGTC.........2011.001000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGT..........2011.001000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAAT.............2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................ATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGTCGTCGTCGGCG-TT------------.................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................G-TT------------GTTG---------CA-TCTG-------------------CTCT------GCCACTT.........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATTGGTAATTGTCGGCGATGG.2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................ACTTTCAGAAC---CTCCAATGACGAC..................................2411.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATTGGTA...............2811.001000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAAT....................2311.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................TG-------------------CTCT------GCCACTTTCAGAAC---CTCCAA.........................................2611.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................AAC---CTCCAATGACGACGATTCGC...........................2311.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CACTTTCAGAAC---CTCCAATGACGAC..................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGTCGTCGTC....................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAATGACGACGATTCGCAAGAAA.....................2311.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................TCGCAAGAAATTGGTAATTGTC.........2211.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CGCAAGAAATTGGTAATTGTCGGC......2411.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................CGTCGGCG-TT------------GTTG---------CA-TCTG-------------------CTCT------GCCAC...........................................................2911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GACGACGATTCGCAAGAAATTGGTAAT.............2711.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................TATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGTCGT........................................................................................................................................3511.001000000000000000000000000000000000000000000000000000000000010000
........................................................................................................................................................................................................................................................................................................................................................................AGAAATTGGTAATTGTCGGC......2011.001000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CGGCG-TT------------GTTG---------CA-TCTG-------------------CTCT------GCCA............................................................2511.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AC---CTCCAATGACGACGATTCGCA..........................2311.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GACGATTCGCAAGAAATTGGT................2111.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................CACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGT..............................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................T-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTC................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................T-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGT..............................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................A-TCTG-------------------CTCT------GCCACTTTCA......................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................ATGACGACGATTCGCAAGAAAT....................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGGTAATTGTCGGCGATGGT2011.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................ACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCG............................................................................................................................................2311.001000000000000000000001000000000000000000000000000000000000000000
............................................................................................................CAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGT...........................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGT..............................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTC.............................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTCAGAAC---CTCCAATGACA....................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATTGGTAATTGTCGGCTT....18130.081000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................CGTCGTCGTCGTCGTCGGCG-...............................................................................................................................20180.061000000001000000000000000000000000000000000000000000000000000000
droMoj3
TGT-GTGT-------GTGTGTATGGC-TTTTTCACTTTGATATTTTT----CAACGAGCTCG-----------CGC----AATTTTCGCAAATATATTT-----AACACAACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGCCGCTGTCGGTG-TC------------GTTG---------CA-TCC------------------A-CTCT------GCCACTTCCAGAAC---CTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................GCAAGAAATTGGTAATTGT..........1912.002100001
........................................................................................................................................................................................................................................................GCTGTCGGTG-TC------------GTTG---------CA-.................................................................................................1811.001000001
........................................................................................................................................................................................................................................................GCTGTCGGTG-TC------------GTTG---------CA-TCC------------------............................................................................2111.001100000
....................................................................................................................................................................................................................................................................................G---------CA-TCC------------------A-CTCT------GCCACTTCCA......................................................2111.001100000
.............................................................................................................AACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGCCGCTGT.....................................................................................................................................2611.001000001
....................................................................................................................................................................................................................................................................................G---------CA-TCC------------------A-CTCT------GCCACTTCCAGAAC---...............................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................CTCCAATGACGACGATTCGC...........................2011.001100000
.............................................................................................................AACGCATCG-TC---------------------------------------------------------------------------------------------------------------------CGTCGTCGCC..........................................................................................................................................2111.001000001
.GT-GTGT-------GTGTGTATGGC-TTTTT..................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..........................................................................................................................................................................................................................................................................................................................................................GACGACGATTCGCAAGAAATTGGTA...............2511.001100000
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATTGGT................2711.001000001
................................................................................................................................................................................................................................................................................................................................................................GATTCGCAAGAAATTGGTAATTGTCGG.......2711.001000001
.............................................................................................................................................................................................................................................................................................................................................AAC---CTCCAATGACGACGATTCGC...........................2311.001100000
.........................................................................................................................................................................................................................................................................................................................................CCAGAAC---CTCCAATGACGACGATTCGC...........................2711.001100000
.........................................................................................................................................................................................................................................................CTGTCGGTG-TC------------GTTG---------CA-TC...............................................................................................1911.001100000
...............................................................................................................................................................................................................................................GTCGTCGCCGCTGTCGGTG-TC------------GT...............................................................................................................2311.001000001
.................................................................................................................................................................................................................................................................G-TC------------GTTG---------CA-TCC------------------A-CTCT------GCCACTTCCA......................................................2711.001010000
...................................................................................................................................................................................................................................................................TC------------GTTG---------CA-TCC------------------A-CTCT------GC..............................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................GCCACTTCCAGAAC---CTCCAATGAC.....................................2411.001000010
droGri2
TG-----T-------ATTTCTGTGTT-TTTTTCACTTTGATATTTTTTT--CAAGCAGCTCG-----------CGC----AGTTTTCGCAAATAAATTA-----AACAGAACGCATCG------------CATCGCCG--CC------------------AA------------------------------------------------------------C---------GTCGTCC---------GTCGTCG---------------GTGTTTG---------CA-TCTTTGCTAC-TCT---CT-GCTCTCT------GCCAATTCCAGAAC---CTCCAATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGATGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................ATGACGACGATTCGCAAGAAATTGGTA...............2711.00110
..............................................................................................................................................................................................................................................................................................................................................AC---CTCCAATGACGACGATTC.............................2011.00101
..........................................................................................................CAGAACGCATCG------------CATCGCCG--CC------------------AA------------------------------------------------------------C---------..........................................................................................................................................................2511.00110
........................................................................................................................................CG--CC------------------AA------------------------------------------------------------C---------GTCGTCC---------GTCGTCG---------------GTG.................................................................................................................2411.00110
.....................................................................................................................................................................................................................................................................................................................................................CCAATGACGACGATTCGCAA.........................2011.00101
.........................................................................................................................................................................................................................................................................................................................................................TGACGACGATTCGCAAGAAA.....................2011.00110
............................................................................................................................................................................................................................................................................................................................................GAAC---CTCCAATGACGACGATTC.............................2211.00110
...............................................................................................................................................................................................................................................................................................................................................C---CTCCAATGACGACGATTCGCA..........................2211.00101
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATTGGT................2711.00101
.......................................................................................................................................................................................................................................................................................................................................................AATGACGACGATTCGCAAGAAATTG..................2511.00101
...............................................................................................................CGCATCG------------CATCGCCG--CC------------------A.................................................................................................................................................................................................................................1820.50110
................................................................................................................GCATCG------------CATCGCCG--CC------------------AA------------------------------------------------------------C---------..........................................................................................................................................................1920.50110

Generated: 05/18/2015 at 09:46 PM