ID:

dsi_3490

 Coordinate:

3l:11685293-11685458 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.6 -14.6 -14.4

Flybase annnotation

CDS [3l_11685459_11685464_-]; five_prime_UTR [3l_11685465_11685599_-]; CDS [3l_11684576_11685292_-]; exon [3l_11684297_11685292_-]; exon [3l_11685459_11685599_-]; intron [3l_11685293_11685458_-]

No Repeatable elements found

mature
star
  1. dsi_3490  3l:11685321-11685335 -
  2. 3r:13946989-13947003 -
  3. 3r:18694806-18694820 +
  4. node_11530:98-112 -
  5. node_31314:128-142 -

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATATTTTTAAGTAATTTATTTAATCGAACTATAATCAAAAAACATGCAGGTAAGATGGAATGTAATAAGCAAATTGCTCTTATCCGAAAATTCAAGTTTTTCCAATTCGATAAACGGTAATGGTGGGTGTGTTTTGGTGCATCCAAAAATAAACTCCATATTTGGTATTGAAAATCATGAATGAAATAAAACTCACGTGGCCTTGTTATCCGTAGGACCCAAACGAAGATACCGAGTGGAATGATGTGCTCCGTGCCAAGGGAAT
**********************************************************************************************************(((((((..(((.....((((((...((((((.....))))))....)).))))..))).)))))))...............****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
..........................................................................................................................................................................................................................................GAGTGGAATGATGTGCTCCGA........... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGAAGATACCGAGTGGAATGA..................... 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TGGAATGATGTGCTCCGTGCCAAGGGA.. 27 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACCGAGTGGAATGATGTGCTTTT............ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGACCCAAACGAAGATACCGCGT............................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................ACCGAGTGGAATGATGTGTA............... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGACCCAAACGAAGACCCCGAGTGGAA........................ 27 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................TGCAGGTAAGATGGAATG........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....TTTTAAGTAATTTATTTCATCGAACTA.......................................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAGGACCCAAACGAAGACACCGAG............................. 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................AGTGGAATGATGTGCTCCG............ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................ACCGAGTGGAATGATGTGCT............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............ATTTATTTCATCGAACTATA........................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GATACCGAGTGGAATGATGTGCTC.............. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................ATACCGAGTGGAATGATGTG................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GGAATGATGTGCTCCGTGCCAAGGGA.. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAGGACCCAAACGAAGACACCGAGT............................ 27 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATACCGAGTGGAATGATGTGT................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......TTAAGTAATTTATTTCATCGAACTA.......................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................AACGAAGATACCGAGTGGAAT....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TTCGATAAACGGTAATGGTGG........................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................TACCGAGTGGAATGATGTGCTC.............. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................AACGAAGATACCGAGTGGAATGATG................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................ATACCGAGTGGAATGATGTGC................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGAAGACACCGAGTGGAATGATGTGCTC.............. 28 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................TGCAGGACCCAAACGAAGATACCGAG............................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGCAGGACCCAAACGAAGATACCGA.............................. 25 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................TGGAATGATGTGCTCCGTGCCTTT..... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AATCATGAATGAAAT.............................................................................. 15 0 5 0.40 2 0 0 0 0 0 0 0 0 2 0
..........................................................................................................................GGCGGGTGTGTTTTGGTGT............................................................................................................................. 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................GAAAGGGTGGGTTTGTTTTGG................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TGACCTTGTTATCCATAGC................................................. 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................ATCATGAATGAAAAAAAAA......................................................................... 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATATAAAAATTCATTAAATAAATTAGCTTGATATTAGTTTTTTGTACGTCCATTCTACCTTACATTATTCGTTTAACGAGAATAGGCTTTTAAGTTCAAAAAGGTTAAGCTATTTGCCATTACCACCCACACAAAACCACGTAGGTTTTTATTTGAGGTATAAACCATAACTTTTAGTACTTACTTTATTTTGAGTGCACCGGAACAATAGGCATCCTGGGTTTGCTTCTATGGCTCACCTTACTACACGAGGCACGGTTCCCTTA
******************************************************************************(((((((..(((.....((((((...((((((.....))))))....)).))))..))).)))))))...............********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
..................................................................................TAGGCATTTAAGTTCAAAA..................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0
..................TAAAGTAGCTTGAAATTAGTT................................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TCGTGGGTTTGCTTCTTTGGAT.............................. 22 3 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................ACACGAGGCACGGTTCCCTTA 21 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................ATAGGCATCCTGGGTTTGCTT...................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................CTACTAAGTTCAAAAAGGCTAAG............................................................................................................................................................. 23 3 4 0.25 1 0 1 0 0 0 0 0
.....................................................................CGTAGAACGAGAGTAGGCTT................................................................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0
...............AAAAAAATTAGGTTGATAT........................................................................................................................................................................................................................................ 19 2 12 0.08 1 0 0 0 0 0 1 0
.............................................................................................................................................................................................................CAATAGGGATCCTGGA............................................. 16 2 14 0.07 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................TGCTTTTATGGCTAACCTAA....................... 20 3 15 0.07 1 0 1 0 0 0 0 0
.......................................................................................................................................ACCACGTAGGTTTTCC................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................TGAGTGGACCGGAACCATG........................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:40 AM