ID:

dsi_3481

 Coordinate:

3l:7506485-7506637 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.3 -38.3 -38.1

Flybase annnotation

five_prime_UTR [3l_7506477_7506484_-]; CDS [3l_7505849_7506476_-]; exon [3l_7505849_7506484_-]; five_prime_UTR [3l_7506638_7507121_-]; exon [3l_7506638_7507121_-]; intron [3l_7506485_7506637_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCCGAAACTGGTTATACACACATCGCAAGGAACACGGGAGGTTGGGAGGGTGAGTAAAAATCGATTTGTTGCACAAAACACACGACGAGTGGGCGAAAATCGGGGGCCGAAAAGTGGGGTGCGGCTATATAGCTGGCATAGCTATAGATTCTAGGTCGACCTGGGATTATAGTACAATATCTGGCCATCTTTTTTCTTGCAGGCTGCCCCATGGACAAAATCAAGTTAAAGGTTATTGGCGTGCTGCGCGAA
**************************************************(((((.(((((..(((..(((((((....(((....((.((...(((...)))...))))....)))..)))))))......(((((.((((((((.(((((((((....))))))))))))))....)))))))).))).))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
..................................ACGGGAGGTTGGGAGGGC......................................................................................................................................................................................................... 18 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.............TATACACACATCGCAAGGAACACGGGA..................................................................................................................................................................................................................... 27 0 1 3.00 3 0 0 2 0 1 0 0 0 0
..................................ACGGGAGGTTGGGAGGGCT........................................................................................................................................................................................................ 19 2 2 2.50 5 0 5 0 0 0 0 0 0 0
..................................ACGGGAGGTTGGGAGGG.......................................................................................................................................................................................................... 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................ACGGGAGGTTGGGAGGGTG........................................................................................................................................................................................................ 19 0 1 2.00 2 0 1 0 0 0 0 0 1 0
.........................................................................................................................................................................................................AGGCGGCCCCCTGGACAAA................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................TCAAGTTAAAGGTTATTGGCGTGC........ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................CGGGAGGTTGGGAGGG.......................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGTACAATATCTGGCCATC............................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................ACGGGAGGTTGGGAGGGT......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1
...................................CGGGAGGTTGGGAGGGTGAG...................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................ACGGGAGGTTGGGAGGGTGA....................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................CGGGAGGTTGGGAGAGTA........................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................GAAGGCGGCCCCCTGGACAA.................................. 20 3 4 0.50 2 0 2 0 0 0 0 0 0 0
..................................ACGGGAGATTGGGAGGGC......................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................ACACATGACGACGGGGCGAAA.......................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TAGGCTTTGACCAATATGTGTGTAGCGTTCCTTGTGCCCTCCAACCCTCCCACTCATTTTTAGCTAAACAACGTGTTTTGTGTGCTGCTCACCCGCTTTTAGCCCCCGGCTTTTCACCCCACGCCGATATATCGACCGTATCGATATCTAAGATCCAGCTGGACCCTAATATCATGTTATAGACCGGTAGAAAAAAGAACGTCCGACGGGGTACCTGTTTTAGTTCAATTTCCAATAACCGCACGACGCGCTT
**************************************************(((((.(((((..(((..(((((((....(((....((.((...(((...)))...))))....)))..)))))))......(((((.((((((((.(((((((((....))))))))))))))....)))))))).))).))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................................................................GACCGTATCGATATCTAAGATCCAGC.............................................................................................. 26 0 1 1.00 1 0 0 0 1 0
TAGGCTTTGACCAATATG........................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
TAGGCTTTGACCAATATGTGT........................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
...........................................................CTAGCTAATCAACGTGTTATGT............................................................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0
.............................................................................................................................................CGATATCTAAGATCCAGCTGGACCCT...................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..............................................................................TGTGTACTGCTGCCCCGCTTT.......................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0
..............................................................................TGTGTACTGCTGCCCCGCTT........................................................................................................................................................... 20 3 6 0.33 2 2 0 0 0 0
........................................................................................................................................CGTATCGATATCGAAGA.................................................................................................... 17 1 6 0.17 1 0 0 0 0 1
.................................................................................................................................................................................................AAAGAACGTACGACGGAGT......................................... 19 2 7 0.14 1 0 0 0 0 1
....................TGAAGCCTTCCTTGTGC........................................................................................................................................................................................................................ 17 2 13 0.08 1 0 0 0 0 1

Generated: 04/24/2015 at 10:21 AM