ID:

dsi_3462

 Coordinate:

2l:52124-52273 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -15.8 -15.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCTACTTATTTGTTTTGCGTCAAAATGAAGAGACTGTATTTTCCTAACATAGCGACCAAGTTCAGTACTTCCACATCGCACTTATTGCGAATACAAAAGCTATCGCTTGATTTTCGGTTGAAAAATAAACGATAATAAAACCGGATAAATTTTTTCTTATGCCCACATTTTGGCGTAAATGCACGAAAACATCGACATAGTGAATCACAAAAACTCAGGAAAATTCATAGCTAAAATGGCAAAAGAAAGA
*******************************************************************************************.....((((....))))....(((((((...................)))))))...........(((((((........))))))).....(((.....)))...***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 O001
Testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
...........................................................................................TACAAAAGCTATCGCTTGATTTTCGGT.................................................................................................................................... 27 0 1 9.00 9 4 3 0 0 2 0 0 0 0 0 0
.........................................................................................................................................................................TTGGCGTAAATGCACGAAAACATCGACA..................................................... 28 0 1 6.00 6 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGGCGTAAATGCACGAAAACATCGACA..................................................... 27 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0
............................................TAACATAGCGACCAAGTTCAGTACT..................................................................................................................................................................................... 25 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
.........................TGAAGAGACTGTATTTTCCTAACATA....................................................................................................................................................................................................... 26 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGCCCACATTTTGGCGTAAATGCACGA................................................................ 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
.........................................TCCTAACATAGCGACCAAGTTCAGTACT..................................................................................................................................................................................... 28 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTGGCGTAAATGCACGAAAACATCGACA..................................................... 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.............TTTGCGTCAAAATGAAGAGACTGTA.................................................................................................................................................................................................................... 25 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0
................................................ATAGCGAACAAGTACAGT........................................................................................................................................................................................ 18 2 11 1.27 14 0 0 0 1 0 2 0 10 0 0 1
.......................................................................................................................................................................................CGAAAACATCGACATAGTGAATCACAAA....................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............TTGCGTCAAAATGAAGAGACTGTATT.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
CCTACTTATTTGTTTTGCGTCAAAA................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTGGCGTAAATGCATGAAAACATCGACA..................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............TTTGCGTCAAAATGAAGAGACTGTAT................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGGCGTAAATGCATGAAAACATCGACA..................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TACAAAAGCTATCGCTTGATTTTCGG..................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCACAAAAACTCAGGAAAATTCATAGCT.................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................TCAAAATGAAGAGACTGTATTT................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................AACGATAATAAAACCGGATAAATT................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................TCAAAATGAAGAGACTGTA.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................ACGAAAACATCGACATAGTGA............................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................TTGATTTTCGGTTGAAAAATAAACGA...................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CTATCGCTTGATTTTCGGTTGAAAAA............................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................TCAAAATGAAGAGACTGTATTTTCCTA............................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................TTCCTAACATAGCGACCAAGGTCAGTACT..................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TATGCCCACATTTTGGCGTAAATGCACGA................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................CTGTATTTTCCTAACATAGCGACCAAGTT............................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAATGCACGAAAACATCGACATAGTGA............................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AAAACTCAGGAAAATTCATAGCTAAAA.............. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................TTCCTAACATAGCGACCAAGTTCAGTACT..................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................AGAGACTGTATTTTCCTAACATAGC..................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTCACGAAAACATCGACATAGTGAA.............................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................CCTAACATAGCGACCAAGTTCAGTACT..................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CGATAATAAAACCGGATAAATTTTT................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................TGAAGAGACTGTATTTTCCTAACAT........................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........TTTGTTTTGCGTCAAAATGAAGAGAC........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.CTACTTATTTGTTTTGCGTCAAA.................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AGCTATCGCTTGATTTTCGGTTGAAAAA............................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................TAAACGATAATAAAACCGGATAAATT................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGGCGTAAATGCACGAAAACATCGACT..................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGCATGAAAACATCGACATAGTGAATCACA......................................... 30 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................TGAAGAGACTGTATTTTCCTAACATAGC..................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................TTCAGTACTTCCACATCGCACTTAT..................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................TACTTCCACATCGCACTTATTGCGA................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............TTGCGTCAAAATGAAGAGACTGTA.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TACAAAAGCTATCGCTTGATTTTCGGTT................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................TGAAGAGACTGTATTTTCCTAACA......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTTTTTCTTATGCCCACATTTTGGCGTA......................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGTAAAACCGGATA....................................................................................................... 15 1 3 0.67 2 0 0 0 0 0 0 0 0 1 1 0
.......................................................................................................TGCTTGATTTTCAGTTGGAAAA............................................................................................................................. 22 3 14 0.43 6 2 4 0 0 0 0 0 0 0 0 0
..................GTCAAAGGGAACAGACTGTA.................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GCTAGTAAAACCGGATA....................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................TGCTTGATTTTCAGTTGAAAA.............................................................................................................................. 21 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAGTAAAACCGGATATA..................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................TTGATTTTCAGTTGGAAAA............................................................................................................................. 19 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.................................................TAGCGAACAAGTACAGT........................................................................................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................TTGATTTTCAGTTGGAAA.............................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................TTTCGTGTGAAAAAAAAACGA...................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGATGAATAAACAAAACGCAGTTTTACTTCTCTGACATAAAAGGATTGTATCGCTGGTTCAAGTCATGAAGGTGTAGCGTGAATAACGCTTATGTTTTCGATAGCGAACTAAAAGCCAACTTTTTATTTGCTATTATTTTGGCCTATTTAAAAAAGAATACGGGTGTAAAACCGCATTTACGTGCTTTTGTAGCTGTATCACTTAGTGTTTTTGAGTCCTTTTAAGTATCGATTTTACCGTTTTCTTTCT
*****************************************************.....((((....))))....(((((((...................)))))))...........(((((((........))))))).....(((.....)))...******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 GSM343915
embryo
 M024
male body
........................................AAGGCTTGTATCGATGG................................................................................................................................................................................................. 17 2 10 2.00 20 8 0 4 2 6 0 0 0 0
...........................................................................................................................................TGGCCTATTTAAAAAAGAATACGGGTGT................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTTTTTGAGTCCTTTTAAGTATCGA.................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................ATTTAAAAAAGAATACGGGTGTAA................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTATCGATTTTAGCGGTTTCT.... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................................ACTTTTTATTTGCTATTATTT............................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................AAAAGGCTTGTATCGATGG................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................AAAGGCTTGTATCGATGG................................................................................................................................................................................................. 18 2 6 0.50 3 0 0 2 0 1 0 0 0 0
......................................AAAAGGCTTGTATCGATGGG................................................................................................................................................................................................ 20 3 4 0.50 2 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................CTACGAGTCTAAAACCGCAT......................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGTATCGATTTTAGTGGTTTCT.... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................AGAAGGCTTGTATCGATGG................................................................................................................................................................................................. 19 3 9 0.22 2 0 0 0 0 2 0 0 0 0
......................................AAAAGGCTTGTATCGATG.................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0
.......................................GAAGGCTTGTATCGATGG................................................................................................................................................................................................. 18 3 20 0.15 3 0 0 0 0 3 0 0 0 0
...........................................................................AGAGTGAACAAGGCTTATGT........................................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0
.......................................................GGTTCAAGACTTCAAGGTGT............................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0
...........................TTTTCTGACTTAAAAGGA............................................................................................................................................................................................................. 18 2 15 0.07 1 0 1 0 0 0 0 0 0 0
............................TCTTTGAGATAAAAGGAT............................................................................................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 1 0
......................................AAAGGGCTTGTATCGATGG................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
...............................................CCATCGCTGATTCAAGTC......................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................AGGCTTGTATCGATGGGT............................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................GAAAAGGCTTGTATCGATG.................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:52074-52323 + dsi_3462 CCTACTTATTTGTTTTGCGTCAAAATGA------AGAGACTGTATTTTCCTAA-----CATAGCGACCAA--------------G-TTCAGTACTTCCACATCGCACTTATTGCGAATACAA---AAG-C----TATCGCTTGATTTTCGGTTGAAAAATAAACGATAATA--------------------------AAACCGGATAAATTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CATAGTGAATCACAAAAACTCAGGAAAATTCATAGCTAAAATGGC--AAAAGAAAGA
droSec2 scaffold_14:65336-65585 + CCTACTTATTTGTTTTGCGTCAAAATGA------AGATACTGTATTTTCCTAA-----CATAGCGACCAA--------------G-TCCAGTACTTCCACATCGCACTTATTGCGAATACAA---AAG-C----TATCGCTTGATTTTCGGTTGAAAAATAAACGATAATA--------------------------AAACCGTATAAATTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CATAGTGAATCACAAAAACTCAGGAAAATTCATAGCTAAAATGGC--AAAAGAAAGA
dm3 chr2L:66228-66422 + CCTACTTATTTGTTTTACGTCAAAATGA------AGAGACTGTGTTTTCC------------------AA--------------G-TCCAGTACGTCCACATCGCACTTATTGCTAATACGA---AAG-----------CTTGATTTT----------------------------------------------------------AAATTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAATACAT--A-G-A-CATAGTGAATCACAAAATCTCAGGAAAA----TAGCTAAAATGGC--AAAAGAAAGA
droEre2 scaffold_4929:92652-92903 + CCTACTTATTTGTTTTACAATAAAATGA------AAAAACTGTGTTATCCTAC-----ATTACCAAACAA--------------GATTCAGTACATCCACTCCAGCCTTATTGCTAATTCAA---AGG-CAGTATTTTGCTTGATTTTCGGGTGAAAAATAAACGACAATA--------------------------AAACCGAATAAATTTTTTCTTATGCCCACGTTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACAAATACAT--T-G-AAACAAGTGAATCACAATAACGCAGGGAAA----TAACAGAAATGGC--AAAAGAAAGA
droYak3 2L:54619-54870 + CCTACTTATTTGTTTTACATTAAAATGA------AGACACTGTTTT--CTCAA-----CTTACCGAACAA--------------GTTCCAGTACGCTCACAACGGCCTGTTTGCTAATACAA---AGG-CAGTATTTCGCTTGATTTTCGTTTGAAATATAAACGACAGTA--------------------------AAACCGGACTAATTTTTTCCTATGGCCACGTTTTGGC-------------------------------------------GTAAAA----------------------------------------------------GTACACATACAT--C-G-AAATAAATGAATCACAATAACGCAGGGAAA----CAGCAGAAATGCAAAGAAAGAAAGA
droEug1 scf7180000409154:57984-58285 + CCTACTTATTTGTTTTATGTCAAATTGGAAAATGAGATATTGTGTTGTCTTATGTCAAGTTGGTTAG-GCAGCCTAAAAGTGGC-C---GTTTGGCTCA---------CATTTCTGATCCTCAAAAACTAAAG------A-------TCGGT--------------TAATG--------G--------------AATTGATAAGTTCT-TAATTTAATATGCTTATGAATTGGCTTTAAGCCCATATATGTACATATGTATTTATGCATGCATGAACGATAA-CCAT---TTTTTTACGTTCA-C-----GA-----------------------------ATACAAGTAAAAAAAAAAGTGTATCGCGATAGTACAAGGAAA----TAGCAGCAAAG-G--AGAAGAAAGA
droBia1 scf7180000301455:71791-72047 + CCTACTTATTTGTTTTATGGCAAAATGG------AGATACTGAGTTACCT-------------------CTGCATAAA-ATGGC-C---GATTCGTCCG---------CCTTGCTGATCTAT---GAG--------------------------------AAAAGTTGATA-----------------AAACACAGTGGACCGGAGCG-TGTCTAAGTATGCCCTCGCTTTGGC-------------------------------------------GTAAAAC-AT---TTCTCTGCACACT-C-----GAATATGTAGAATGTACATACATATGTACA--TACATGCGGG--AAAAAGTGTATTGCGATAGCGCAAGGAAA----TAGCTACAAAAGG--AGAAGAAAGA
droTak1 scf7180000413017:501343-501581 - CCTACTTATTTGTTTTATATCAAAATGG------AGATACTGCGTTGCTCCAA-----GTGGGTTACCACAACATAAA-ATGGC-C--------GTCCA---------CATTGCTGATCCCA---AAG-----------------------------AATAATTGACA--------------------TCCCACATTGAACCGGATCA-T------GTATGCCCCCGCGTTGGC-------------------------------------------ATAAAAA-GT---TTCTCAGCATACCTCACTTTGA-----------------------------ATACATGCGGG--AAATAGTGTATTGCGATAGCGTAAGGAAA----CAGCTACAAAAGG--AGAAGAAAGA
droEle1 scf7180000490550:9808-10066 + CCTACTTATTTGTT--ATGTCGAAATGG------GGATATTGTGCTTATA------------AAGACCAT--CTTAAA--AACC-T---G-TTACTTTA---------CATTGCGGATTAAA---AAAAAAACAATTTTCTAGTTTTTCGGCTAAAA--TAGTTGATAAGA-----------------CGCCAC-GTCGGCCGGATAA-TGTGTTAGTATGCCCACGGTTTAAT-------------------------------------------GAAAA-CTTTTTATTCTCTGCGTACAAA-----CA-----------------------------ATACATGCAAG--GAAAAGTGTAT-----CAGCGTAAGGAAA----TAGCAACAAAAGC--AGAAGAAAGA
droRho1 scf7180000779252:55710-55968 - CCTACTTATTTGATTT--GTCAAAATGG------AGATAATGTGTTGATT---------------ACCACTATTTAAA-ATGAA-T---G-TTAGTTCA---------TATTACCAATTCAA---AAT-TAGTAATTGGCACGCTTTTCTGTTCAAA--TAATATGTA--------------------ATCCACAATCGGCCGGATTA-TGTATAAGTATACCTACGTTTTGAC-------------------------------------------GTAAAAAGGT---TTCTCTTCATACAAC-----GA-----------------------------ATTCATGTAAG--AAAAAGTGTATTGCGATAGCGTAAGGAAA----TAGCAACAAAAGG--AAAAGAAAGA
droFic1 scf7180000453904:1499160-1499411 + CCTACTTATTTGTTTTAAGTCAA-ATAA------AGATGCTTTGCTGTCCCAT-----CTTTGGAACCGTTATCTAAA-ATGGC-T---A---GGTCTA---------CAGTGT--GACCGA---AAG-A----TGTCTTAAAATTGCT-----------------TTGTTGGAAAAAAAAATGGGTAATTCCCAGTTTTCCTTATTG-TTTTTTTTTTTGGTTGCGCCT--GC-------------------------------------------ATACAAA-GT---TTTTCGGTATTTCTC------------------------------------------------A-TATTAGAAAGCATGATAACATAAAAAAA----TAGCAAGAATAGAG-AATAGAAGAG
droKik1 scf7180000302377:12286-12324 + CTCACGTGTTTGC---ATATCTGGACGA------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAT--C-G-T-CATAG----------------------------------------------------
dp5 4_group2:73072-73108 - CCTACTTTTTTGTTTTATATTAAAATAG------CG-----------------------------ACTAA--------------A-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_8:3821501-3821537 + CCTACTTTTTTGTTTTATATTAAAATAG------CG-----------------------------ACTAA--------------A-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTACTTATTTGTTTTGCGTCAAAATGA------AGAGACTGTATTTTCCTAA-----CATAGCGACCAA--------------G-TTCAGTACTTCCACATCGCACTTATTGCGAATACAA---AAG-C----TATCGCTTGATTTTCGGTTGAAAAATAAACGATAATA--------------------------AAACCGGATAAATTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CATAGTGAATCACAAAAACTCAGGAAAATTCATAGCTAAAATGGC--AAAAGAAAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................TACAA---AAG-C----TATCGCTTGATTTTCGGT....................................................................................................................................................................................................................................................................2719.00900000043000020000
.....................................................................................................................................................................................................................................TTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CA.......................................................2816.00600000033000000000
......................................................................................................................................................................................................................................TGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CA.......................................................2715.00500000032000000000
..................................................TAA-----CATAGCGACCAA--------------G-TTCAGTACT.............................................................................................................................................................................................................................................................................................................................2514.00400000022000000000
.........................TGA------AGAGACTGTATTTTCCTAA-----CATA..............................................................................................................................................................................................................................................................................................................................................................2614.00400000022000000000
...........................................................................................................................................................................................................................TGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGA.......................................................................2713.00300000021000000000
...............................................TCCTAA-----CATAGCGACCAA--------------G-TTCAGTACT.............................................................................................................................................................................................................................................................................................................................2813.00300000012000000000
....................................................................................................................................................................................................................................TTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CA.......................................................2912.00200000011000000000
.............TTTGCGTCAAAATGA------AGAGACTGTA................................................................................................................................................................................................................................................................................................................................................................................2512.00200000001000001000
..................................................................................................................................................................................................................................................................................................................................................CGAAAACAT--C-G-A-CATAGTGAATCACAAA.........................................2811.00100000001000000000
..............TTGCGTCAAAATGA------AGAGACTGTATT..............................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
CCTACTTATTTGTTTTGCGTCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.............TTTGCGTCAAAATGA------AGAGACTGTAT...............................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
.....................................................................................................................TACAA---AAG-C----TATCGCTTGATTTTCGG.....................................................................................................................................................................................................................................................................2611.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................TCACAAAAACTCAGGAAAATTCATAGCT....................2811.00100000001000000000
...................TCAAAATGA------AGAGACTGTATTT.............................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.................................................................................................................................................................AACGATAATA--------------------------AAACCGGATAAATT.........................................................................................................................................................................................................2411.00100000001000000000
...................TCAAAATGA------AGAGACTGTA................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................ACGAAAACAT--C-G-A-CATAGTGA.................................................2111.00100000000001000000
............................................................................................................................................TTGATTTTCGGTTGAAAAATAAACGA......................................................................................................................................................................................................................................................2611.00100000001000000000
.................................................................................................................................C----TATCGCTTGATTTTCGGTTGAAAAA.............................................................................................................................................................................................................................................................2611.00100000000000010000
...................TCAAAATGA------AGAGACTGTATTTTCCTA........................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................TATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGA.......................................................................2911.00100000010000000000
.......................................CTGTATTTTCCTAA-----CATAGCGACCAA--------------G-TT....................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................AAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CATAGTGA.................................................2711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAAACTCAGGAAAATTCATAGCTAAAA................2711.00100000000001000000
..............................................TTCCTAA-----CATAGCGACCAA--------------G-TTCAGTACT.............................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
..................................AGAGACTGTATTTTCCTAA-----CATAGC............................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
................................................CCTAA-----CATAGCGACCAA--------------G-TTCAGTACT.............................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................CGATAATA--------------------------AAACCGGATAAATTTTT......................................................................................................................................................................................................2511.00100000010000000000
.........................TGA------AGAGACTGTATTTTCCTAA-----CAT...............................................................................................................................................................................................................................................................................................................................................................2511.00100001000000000000
........TTTGTTTTGCGTCAAAATGA------AGAGAC....................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.CTACTTATTTGTTTTGCGTCAAA....................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
..............................................................................................................................AG-C----TATCGCTTGATTTTCGGTTGAAAAA.............................................................................................................................................................................................................................................................2811.00100000001000000000
...............................................................................................................................................................TAAACGATAATA--------------------------AAACCGGATAAATT.........................................................................................................................................................................................................2611.00100000010000000000
......................................................................................................................................................................................................................................TGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CT.......................................................2711.00100000010000000000
.........................TGA------AGAGACTGTATTTTCCTAA-----CATAGC............................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
......................................................................................TTCAGTACTTCCACATCGCACTTAT.............................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...........................................................................................TACTTCCACATCGCACTTATTGCGA........................................................................................................................................................................................................................................................................................................2511.00100000010000000000
..............TTGCGTCAAAATGA------AGAGACTGTA................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.....................................................................................................................TACAA---AAG-C----TATCGCTTGATTTTCGGTT...................................................................................................................................................................................................................................................................2811.00100000000000001000
.........................TGA------AGAGACTGTATTTTCCTAA-----CA................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.................................................................................................................................................................................................................TTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTA....................................................................................................................................2811.00100000001000000000
droSec2
CCTACTTATTTGTTTTGCGTCAAAATGA------AGATACTGTATTTTCCTAA-----CATAGCGACCAA--------------G-TCCAGTACTTCCACATCGCACTTATTGCGAATACAA---AAG-C----TATCGCTTGATTTTCGGTTGAAAAATAAACGATAATA--------------------------AAACCGTATAAATTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAAAACAT--C-G-A-CATAGTGAATCACAAAAACTCAGGAAAATTCATAGCTAAAATGGC--AAAAGAAAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CCTACTTATTTGTTTTACGTCAAAATGA------AGAGACTGTGTTTTCC------------------AA--------------G-TCCAGTACGTCCACATCGCACTTATTGCTAATACGA---AAG-----------CTTGATTTT----------------------------------------------------------AAATTTTTTCTTATGCCCACATTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAATACAT--A-G-A-CATAGTGAATCACAAAATCTCAGGAAAA----TAGCTAAAATGGC--AAAAGAAAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................TCAGGAAAA----TAGCTAAAATGGC--AAAAGA....2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CACAAAATCTCAGGAAAA----TAGCTAAAA................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................TTCC------------------AA--------------G-TCCAGTACGTCCACATCGC...................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................CACAAAATCTCAGGAAAG----.........................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAAAA----TAGCTAAAATGGC--AAAA......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
........................................................................................................................................................................................................................................................................................AAT----------------------------------------------------GCACGAATACAT--A-G-A-CATAGTGAATC..............................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGAAAA----TAGCTAAAATGGC--AAA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACGAATACAT--A-G-A-CA.......................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AAT----------------------------------------------------GCACGAATACAT--A-G-A-CATAGTGAA................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................T--A-G-A-CATAGTGAATCACAAAATCTCAGG.................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTGTTTTACGTCAAAATGA------AGAGACTGT.................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TTCC------------------AA--------------G-TCCAGTACGTCCACATCG....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............TACGTCAAAATGA------AGAGACTGTGTT..............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TCCAGTACGTCCACATCGCACTTATT............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TTTTCC------------------AA--------------G-TCCAGTACGTCCACATC.....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGGAAAA----TAGCTAAAATGGC--AAAAGAAA..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TAGTGAATCACAAAATCTCAGGAAAA----TAGC.....................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACAAAATCTCAGGAAAA----C........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................TCCAGTACGTCCACATCGCACTTATTGC..........................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CAAAATCTCAGGAAAA----TAGCTAAAATG..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................TCCACATCGCACTTATTGCTAATACGA---A..............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................A-CATAGTGAATCACAAAATCTCAGGAA...............................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GA------AGAGACTGTGTTTTCC------------------AA--------------G-TCCAGTAC..............................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGGAAAA----TAGCTAAAATGGC--AAAAGAAA..2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACTTATTTGTTTTACGTCAAAATGA------AGA.......................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTACTTATTTGTTTTACGTCAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................TTTTTTCTTATGCCCACA.........................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TACGTCCACATCGCACTTATTGCTAA.......................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TATTTGTTTTACGTCAAAATGA------AGAGAC....................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTTACGTCAAAATGA------AGAGACTGTGTTTTC...........................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AT----------------------------------------------------GCACGAATACAT--A-G-A-CATAGTGAA................................................2611.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCTACTTATTTGTTTTACAATAAAATGA------AAAAACTGTGTTATCCTAC-----ATTACCAAACAA--------------GATTCAGTACATCCACTCCAGCCTTATTGCTAATTCAA---AGG-CAGTATTTTGCTTGATTTTCGGGTGAAAAATAAACGACAATA--------------------------AAACCGAATAAATTTTTTCTTATGCCCACGTTTTGGC-------------------------------------------GTAAAT----------------------------------------------------GCACAAATACAT--T-G-AAACAAGTGAATCACAATAACGCAGGGAAA----TAACAGAAATGGC--AAAAGAAAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................A------AAAAACTGTGTTATCCTAC-----ATTACC............................................................................................................................................................................................................................................................................................................................................................2611.0010100000
droYak3
CCTACTTATTTGTTTTACATTAAAATGA------AGACACTGTTTT--CTCAA-----CTTACCGAACAA--------------GTTCCAGTACGCTCACAACGGCCTGTTTGCTAATACAA---AGG-CAGTATTTCGCTTGATTTTCGTTTGAAATATAAACGACAGTA--------------------------AAACCGGACTAATTTTTTCCTATGGCCACGTTTTGGC-------------------------------------------GTAAAA----------------------------------------------------GTACACATACAT--C-G-AAATAAATGAATCACAATAACGCAGGGAAA----CAGCAGAAATGCAAAGAAAGAAAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CCTACTTATTTGTTTTATGTCAAATTGGAAAATGAGATATTGTGTTGTCTTATGTCAAGTTGGTTAG-GCAGCCTAAAAGTGGC-C---GTTTGGCTCA---------CATTTCTGATCCTCAAAAACTAAAG------A-------TCGGT--------------TAATG--------G--------------AATTGATAAGTTCT-TAATTTAATATGCTTATGAATTGGCTTTAAGCCCATATATGTACATATGTATTTATGCATGCATGAACGATAA-CCAT---TTTTTTACGTTCA-C-----GA-----------------------------ATACAAGTAAAAAAAAAAGTGTATCGCGATAGTACAAGGAAA----TAGCAGCAAAG-G--AGAAGAAAGASizeHit CountTotal NormTotal
No Reads
droBia1
CCTACTTATTTGTTTTATGGCAAAATGG------AGATACTGAGTTACCT-------------------CTGCATAAA-ATGGC-C---GATTCGTCCG---------CCTTGCTGATCTAT---GAG--------------------------------AAAAGTTGATA-----------------AAACACAGTGGACCGGAGCG-TGTCTAAGTATGCCCTCGCTTTGGC-------------------------------------------GTAAAAC-AT---TTCTCTGCACACT-C-----GAATATGTAGAATGTACATACATATGTACA--TACATGCGGG--AAAAAGTGTATTGCGATAGCGCAAGGAAA----TAGCTACAAAAGG--AGAAGAAAGASizeHit CountTotal NormTotal
No Reads
droTak1
CCTACTTATTTGTTTTATATCAAAATGG------AGATACTGCGTTGCTCCAA-----GTGGGTTACCACAACATAAA-ATGGC-C--------GTCCA---------CATTGCTGATCCCA---AAG-----------------------------AATAATTGACA--------------------TCCCACATTGAACCGGATCA-T------GTATGCCCCCGCGTTGGC-------------------------------------------ATAAAAA-GT---TTCTCAGCATACCTCACTTTGA-----------------------------ATACATGCGGG--AAATAGTGTATTGCGATAGCGTAAGGAAA----CAGCTACAAAAGG--AGAAGAAAGASizeHit CountTotal NormTotal
No Reads
droEle1
CCTACTTATTTGTT--ATGTCGAAATGG------GGATATTGTGCTTATA------------AAGACCAT--CTTAAA--AACC-T---G-TTACTTTA---------CATTGCGGATTAAA---AAAAAAACAATTTTCTAGTTTTTCGGCTAAAA--TAGTTGATAAGA-----------------CGCCAC-GTCGGCCGGATAA-TGTGTTAGTATGCCCACGGTTTAAT-------------------------------------------GAAAA-CTTTTTATTCTCTGCGTACAAA-----CA-----------------------------ATACATGCAAG--GAAAAGTGTAT-----CAGCGTAAGGAAA----TAGCAACAAAAGC--AGAAGAAAGASizeHit CountTotal NormTotal
No Reads
droRho1
CCTACTTATTTGATTT--GTCAAAATGG------AGATAATGTGTTGATT---------------ACCACTATTTAAA-ATGAA-T---G-TTAGTTCA---------TATTACCAATTCAA---AAT-TAGTAATTGGCACGCTTTTCTGTTCAAA--TAATATGTA--------------------ATCCACAATCGGCCGGATTA-TGTATAAGTATACCTACGTTTTGAC-------------------------------------------GTAAAAAGGT---TTCTCTTCATACAAC-----GA-----------------------------ATTCATGTAAG--AAAAAGTGTATTGCGATAGCGTAAGGAAA----TAGCAACAAAAGG--AAAAGAAAGASizeHit CountTotal NormTotal
No Reads
droFic1
CCTACTTATTTGTTTTAAGTCAA-ATAA------AGATGCTTTGCTGTCCCAT-----CTTTGGAACCGTTATCTAAA-ATGGC-T---A---GGTCTA---------CAGTGT--GACCGA---AAG-A----TGTCTTAAAATTGCT-----------------TTGTTGGAAAAAAAAATGGGTAATTCCCAGTTTTCCTTATTG-TTTTTTTTTTTGGTTGCGCCT--GC-------------------------------------------ATACAAA-GT---TTTTCGGTATTTCTC------------------------------------------------A-TATTAGAAAGCATGATAACATAAAAAAA----TAGCAAGAATAGAG-AATAGAAGAGSizeHit CountTotal NormTotal
No Reads
droKik1
CTCACGTGTTTGC---ATATCTGGACGA------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAT--C-G-T-CATAG----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCTACTTTTTTGTTTTATATTAAAATAG------CG-----------------------------ACTAA--------------A-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCTACTTTTTTGTTTTATATTAAAATAG------CG-----------------------------ACTAA--------------A-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 01:54 PM