ID:

dsi_3452

 Coordinate:

3r:10656985-10657134 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.8 -24.6 -24.4

Flybase annnotation

CDS [3r_10657135_10657272_+]; exon [3r_10657135_10657272_+]; intron [3r_10653992_10657134_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTAAAAATATACATAAATGTGCAGAGAAACAAAACCGCCAGTTGCCAACGTCTGTTTTCTAAGGCGGAAGAATATGAGTTTAGATCTTGAGCATTCTTCTTGTCCTCAATTCAAATTAGTTTTCGAGCTGCCGCTAATCGATAAGGTTTTTTTTTTTTCAGGGCCACTGGGCGCCACTCAACATACGTATGTAATGCAGCTTGATGGCCAACTGGTTGCGGATGCGGCGGACGCAGCGCATCAATTTCC
**************************************************..((((.......(((((..(((.((.(((((.((..(((((.((.......)).))))).))))))).)).)))...)))))...((((.....))))............(((((....))).)).....((((....))))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
....................................................CTGTTTTCTAAGGCGGAA.................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................GGATGCGGCGGACGCAGCGCAT........ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCGTATGTAATGTAGCATGATG........................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................TTCAGGTCCCCCGGGCGCCA......................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0
............................................GCCAACGTGTGATTTCTAGG.......................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0
.....................................................TGTTATCTAAGGCCGAA.................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0
.......................................................................................................................................TCAGCGATAAGGTTTTTTTTTA............................................................................................. 22 3 5 0.20 1 0 0 0 0 0 1 0 0
..........................................................................ATGAGTTTAGGTCTTGAC.............................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 1 0
...................................................TCTGGTTCCTAAGGCGGGA.................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 1 0 0 0 0
................................................................TCGGAAGAACATGAGTT......................................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 1 0 0
......................................................................GAATATGAGTGTAGACGTT................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................ACTGGTTGAGGATGCGA...................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGATTTTTATATGTATTTACACGTCTCTTTGTTTTGGCGGTCAACGGTTGCAGACAAAAGATTCCGCCTTCTTATACTCAAATCTAGAACTCGTAAGAAGAACAGGAGTTAAGTTTAATCAAAAGCTCGACGGCGATTAGCTATTCCAAAAAAAAAAAAGTCCCGGTGACCCGCGGTGAGTTGTATGCATACATTACGTCGAACTACCGGTTGACCAACGCCTACGCCGCCTGCGTCGCGTAGTTAAAGG
**************************************************..((((.......(((((..(((.((.(((((.((..(((((.((.......)).))))).))))))).)).)))...)))))...((((.....))))............(((((....))).)).....((((....))))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................................................................................................AAAAAAAAGTCCCGGTGACCAGAGT.......................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................CAAGAGATTCCGCCTCCTTTT............................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................TTGGCGGTCAACGGTTGCAGA.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................ACGTCTCTTTGTTTTGGCGGT................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................CTTTGTTTTGGGGGTCAA.............................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0
...............................................................................................AGAAAAACCGGAGTTAAGT........................................................................................................................................ 19 2 7 0.43 3 0 1 0 0 0 1 0 1 0
............................................................................................................TTAAGTGTAATCAAAAGC............................................................................................................................ 18 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAAAAAAGAAGTCCCGGTACC................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0
...............................TTTGGGCGGTCAACGGTTA........................................................................................................................................................................................................ 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................AAAAAAAAAAGTCTCGGTTA................................................................................. 20 2 11 0.09 1 0 1 0 0 0 0 0 0 0
............................................................................................................TTAAGTGTAATCAATAGC............................................................................................................................ 18 2 11 0.09 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................ACCGAGGTGGGTTGTATGC.............................................................. 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................CTTGCGTCGCGTAGT...... 15 1 14 0.07 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 10:46 AM