ID:

dsi_3447

Coordinate:

3l:16114527-16114744 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-70.4	-70.4	-70.3

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(GGA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

CTGTTGGTTTTGCTCGGCACCAGCATAATGCGGCTGGTGGTCTTCCAGAGGTGAGTTGATGGGGATTGAAACTGGCACTGGGATTGGGAGACTAGGAGAGGTAGCGGATGAGCTGGAAACCACCATTTCAGGTGATGTTTTCGGGGCGTCCAAGCGAGGCGAGCCCCGAGCTGTTTTGCATCCACCACTGCGTATACGTGTTGCCGAAAAAGTTGTTGGCCATTTAAATTGGCAAGCCCCTCCTCCTTCTCCTCCTCCTCCATTCCAGCTCCCTGCTGACACTGGCCTTGTCCACTGGCGCTCTGTTGCTGCTCGGCT ************************************************((.((((............)))).)).(((((((.(((((...((((((((.((.(((((..((((((((((((......))))..))))))))..)))))..(((((((.(((.....))))))))))......((.((((....)))).))...........(((.((((.......)))).))).....)).)))))))).)))))..)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M025 embryo
..........................................................................................ACTAGGAGAGGTAGCGGA..................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................AAAAGTAGCGGATGAGCTG...........................................................................................................................................................................................................	19	2	2	1.00	2	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GGGAGGCGAGCCCCGAGCGG.................................................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTTGCCGAAAAAGTTGGAGCC..................................................................................................	21	3	9	0.67	6	0	6	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTGCCGAAAAAGTTGGAGCC..................................................................................................	20	3	20	0.55	11	0	10	0	0	0	0	0	0	0	1
..........................................................................................ACTATGAGTGGTAGCGG...................................................................................................................................................................................................................	17	2	3	0.33	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................GCTGTTCGCCATTTAAATTGG......................................................................................	21	2	3	0.33	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................GGAGGCGAGCCCCGAGCG..................................................................................................................................................	18	2	3	0.33	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................TGTTGCCGAAAAAGTTGGAGC...................................................................................................	21	3	7	0.14	1	0	0	0	0	0	0	1	0	0	0
...................................................TGAGTAGATGGGGAT............................................................................................................................................................................................................................................................	15	1	8	0.13	1	0	0	0	0	1	0	0	0	0	0
..................................................................................ATTGGCAGACTAGGAG............................................................................................................................................................................................................................	16	1	8	0.13	1	0	0	0	0	1	0	0	0	0	0
...............................GGCTGGTGGTGTTCGAGA.............................................................................................................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................ACGCGACCCCCGAGCGGT................................................................................................................................................	18	3	20	0.10	2	1	0	0	0	1	0	0	0	0	0
......................................................................................................ACCGGATGAGCTAGGAACC.....................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................GTTCGCCATTTAAAGTGG......................................................................................	18	2	15	0.07	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................TGTTGCCGATAAAGTTGG......................................................................................................	18	2	16	0.06	1	0	0	0	0	0	0	0	1	0	0
........................CGAATGCGGCTGGTGGTTTT..................................................................................................................................................................................................................................................................................	20	3	19	0.05	1	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................TGTTCGCCATTTAAAGTG.......................................................................................	18	2	20	0.05	1	0	0	0	0	1	0	0	0	0	0

Anti-sense strand reads

GACAACCAAAACGAGCCGTGGTCGTATTACGCCGACCACCAGAAGGTCTCCACTCAACTACCCCTAACTTTGACCGTGACCCTAACCCTCTGATCCTCTCCATCGCCTACTCGACCTTTGGTGGTAAAGTCCACTACAAAAGCCCCGCAGGTTCGCTCCGCTCGGGGCTCGACAAAACGTAGGTGGTGACGCATATGCACAACGGCTTTTTCAACAACCGGTAAATTTAACCGTTCGGGGAGGAGGAAGAGGAGGAGGAGGTAAGGTCGAGGGACGACTGTGACCGGAACAGGTGACCGCGAGACAACGACGAGCCGA ************************************************((.((((............)))).)).(((((((.(((((...((((((((.((.(((((..((((((((((((......))))..))))))))..)))))..(((((((.(((.....))))))))))......((.((((....)))).))...........(((.((((.......)))).))).....)).)))))))).)))))..)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries
.....................................................................................ACCTCTGATCCTCTC..........................................................................................................................................................................................................................	15	1	2	3.50	7	7	0	0	0	0	0	0
.....................................................................................ACCTCTGATCCTCTCC.........................................................................................................................................................................................................................	16	1	1	2.00	2	2	0	0	0	0	0	0
......................................................................................CCTCTGATCCTCTCA.........................................................................................................................................................................................................................	15	1	2	1.00	2	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................AGAGGAGGAGGGGGTAAGGT...................................................	20	1	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................GGAACATGTGATCGCGAG...............	18	2	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................ACCTCTGATCCTCTCA.........................................................................................................................................................................................................................	16	2	20	0.80	16	14	0	0	0	0	0	2
................................CCACCGGCAGAAGGTCTCCAC.........................................................................................................................................................................................................................................................................	21	3	5	0.40	2	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................................AGGTCGAAGGACGACTGCG....................................	19	2	4	0.25	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................GACAACGGCTTTTTCAACCTC....................................................................................................	21	3	5	0.20	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................TAAGGTAGAGGGACGA.........................................	16	1	7	0.14	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TGTGTCAAGAACAGGTGAC.....................	19	3	18	0.11	2	2	0	0	0	0	0	0
.................................................................................................................................................CGTAGGCTCGCTCCGCTCGC.........................................................................................................................................................	20	3	11	0.09	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................TGACCGGACCAGGTG.......................	15	1	16	0.06	1	1	0	0	0	0	0	0
.................................................................................................................TCCTTTGGTGGTAGAGT............................................................................................................................................................................................	17	2	18	0.06	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................AGGAGGAAGAGGAGGAG.............................................................	17	0	20	0.05	1	0	0	1	0	0	0	0
..........................................................................................................................GCCAAAGTCCACTACA....................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0
....................................................................................CACCTCTGATCCTCTC..........................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................CGGTAGAGGGACGACTGTA....................................	19	3	20	0.05	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................GGAAGAGGAGGAGGAGG.........................................................	17	0	20	0.05	1	0	1	0	0	0	0	0

Generated: 04/24/2015 at 02:12 AM