ID:

dsi_3431

 Coordinate:

3r:4719515-4719573 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4718601_4719514_+]; exon [3r_4718383_4719514_+]; CDS [3r_4719574_4719869_+]; exon [3r_4719574_4719869_+]; intron [3r_4719515_4719573_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
GCGGATATCTACCCTCGACACACGCAGTTCCGGCACATTGAATATCCCAAGTAAGATACCCTAAATATCCGTTGGATTCCCTGCTTCTAACCTTCTGCGTCGCTTTTAGATACACTGCCGTTTCGGTTCTTGAGATGGACTTCGAGCGTATTGACATAA
**************************************************....................((((((.........))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......................................................................................................................ATTCCGGTTCTTGAGATG...................... 18 2 4 4.50 18 10 0 7 0 1 0 0 0
.........................................................................................................................TTCGGTTCTTGAGATGGACTTCGAGC............ 26 0 1 3.00 3 1 2 0 0 0 0 0 0
....................................................................................TTTTAACCTTCTGCGT........................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0 0
.........................................................................................................................TCCGGTTCTTGAGATGGG.................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0
....................................................................................................................GCCTTTTCGGTTCTTGAC......................... 18 2 5 0.20 1 0 0 0 1 0 0 0 0
......................................................................................................................GATTCCGGTTCTTGAGATG...................... 19 3 20 0.15 3 1 0 2 0 0 0 0 0
......................................................................................................................CGTTACGGTTCTTGAAA........................ 17 2 8 0.13 1 0 0 0 0 0 1 0 0
.......................................................................................................................ATTCCGGTTCTTGAGATGGG.................... 20 3 10 0.10 1 0 0 0 0 1 0 0 0
........................................................................................................................TTCCGGTTCTTGAGATGGGG................... 20 3 10 0.10 1 0 0 0 0 1 0 0 0
......................................................................................................................GATTCCGGTTCTTGAGAT....................... 18 3 20 0.10 2 1 0 0 0 1 0 0 0
..........................................................................................................................TTTGTTCTTGAGATGGA.................... 17 2 20 0.10 2 0 0 0 0 0 0 2 0
.........................................................................................................................TTCGGGTCTTTTGATGGACT.................. 20 3 10 0.10 1 0 0 1 0 0 0 0 0
............................................................CTGAATATCCGTTGGAA.................................................................................. 17 2 12 0.08 1 0 0 0 0 0 0 0 1
......................................................................................................................GATTCCGGTTCTTGAGATGG..................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0
........................................................................TGGATGACCTGCTTCGAAC.................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0
..................................................................GTCCGTTGGATTGCCTG............................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGCCTATAGATGGGAGCTGTGTGCGTCAAGGCCGTGTAACTTATAGGGTTCATTCTATGGGATTTATAGGCAACCTAAGGGACGAAGATTGGAAGACGCAGCGAAAATCTATGTGACGGCAAAGCCAAGAACTCTACCTGAAGCTCGCATAACTGTATT
**************************************************....................((((((.........))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
.....ATAGATGGTAGCTGTG.......................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0
............GGAGATGTGAGCGTCAAGGCG.............................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................GGATCTATAGGCAAC..................................................................................... 15 1 5 1.00 5 0 5 0 0 0 0 0
...........TGGAGATGTGTGCGTCAAGGC............................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................AAGATTGGAAGACGC............................................................ 15 0 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................ATTGGAAGAGGCAGGGA....................................................... 17 2 4 0.75 3 0 3 0 0 0 0 0
............GGAGATGTGAGCGTCAAG................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0
.............GAGATGTGAGCGTCAAGG................................................................................................................................ 18 2 4 0.50 2 2 0 0 0 0 0 0
.......................................................TCTCGGATCTATAGGCAAC..................................................................................... 19 3 7 0.43 3 1 2 0 0 0 0 0
..................................................................................AGAAGATAGGAAGACGCAG.......................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0
.....................................................................................AGATAGGAAGACGCAG.......................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0
.......................CCTCAAGGCCGTGTAGCTTAG................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0
........................................................................................TTGGAAGAGGCAGGGA....................................................... 16 2 20 0.30 6 0 5 0 1 0 0 0
.............GAGATGTGAGCGTCAAG................................................................................................................................. 17 2 10 0.30 3 3 0 0 0 0 0 0
...........TGGAGATGTGAGCGTCAAGG................................................................................................................................ 20 3 7 0.29 2 1 0 0 1 0 0 0
..............AGATGTGAGCGTCAAGGC............................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................AGATAGGAAGACGCA........................................................... 15 1 9 0.22 2 0 0 0 2 0 0 0
.............GAGATGTGAGCGTCAAGGCG.............................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0
.................................................................CTAGGCAACCTAAGTGAC............................................................................ 18 2 10 0.20 2 0 0 0 0 0 1 1
............GGAGATGTGAGCGTCAA.................................................................................................................................. 17 2 10 0.20 2 2 0 0 0 0 0 0
.....................................................................................AGATTGGAAGGCGCAGG......................................................... 17 2 6 0.17 1 0 0 0 1 0 0 0
.............GAGATGTGTGCGTCA................................................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0
..............................................................................................................................AAGAACCCTACCTGAAGT............... 18 2 6 0.17 1 0 1 0 0 0 0 0
.............GAGATGTGAGCGTCAA.................................................................................................................................. 16 2 20 0.15 3 3 0 0 0 0 0 0
.........................................................TCGGATCTATAGGCAAC..................................................................................... 17 2 8 0.13 1 0 1 0 0 0 0 0
............GGAGATGTGAGCGTCAAGGT............................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0
........................................................CTCGGATCTATAGGCAAC..................................................................................... 18 3 20 0.10 2 0 2 0 0 0 0 0
.........................TCAAGGCGGAGTAACTTA.................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 1 0
.....................................................................................GGATTGGAAGAGGCAGGGA....................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0
..................................TGGAACTTATAGGGT.............................................................................................................. 15 1 17 0.06 1 0 0 1 0 0 0 0
..................................................................................AGAAGATAGGAAGACGC............................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0
.......................................................................................ATTGGAAGAGGCAGGG........................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0
..............AGATGTGAGCGTCAAGGCG.............................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................AGAACTCTCCCCGAAG................ 16 2 20 0.05 1 0 0 0 1 0 0 0
.........................TCGAGGCGATGTAACTTAT................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:23 AM