ID:

dsi_3402

 Coordinate:

2r:19475265-19475414 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.4 -24.1 -24.0

Flybase annnotation

five_prime_UTR [2r_19475032_19475509_+]; exon [2r_19475032_19475624_+]

Repeatable elements

NameClassFamilyStrand
(CGTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TCTCAATTTGATCAATTTAGCATTCTGGCCATTTGACAATACAAATTGAGACTCGTCTGCACTGGGTACAAAGTTCAGTCCGTGTGCATTGGCCTGTGCCTGTGTGCGTGCGTTCGGGCGTGTGTGCCTGTGTGTGTGTGAGTGTGCAGTACGCAAATGAGAGGAGAAAAAGCAAGAAACCACTGCCAATCATTTTTCAGTCTGTGTCCAAAGCGCTTGTGTGAAAGTATTCTGATTCGCCCGCCCGCCC
************************************************************...(((((((.......((((((((((((.(((....))).)))))))......)))))...))))))).************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.....ATTTGATCAATTTAGCATTCTGGCC............................................................................................................................................................................................................................ 25 0 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0
.........................................CAAATTGAGACTCGTCTGCA............................................................................................................................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGTGTGAAAGTATTCTGAT.............. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTTGTGTGAAAGTATTCTGATTC............ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................AAATTGAGACTCGTCTGCACT........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAAGTATTCTGATTCGCC......... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AAATTGAGACTCGTCTGCA............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................CGTGCGTTCGGGCGTGTGTGCCTG........................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........TCAATTTAGCATTCTGGTCATT......................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAAAGTATTCTGATTCGCCC........ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCGCTTGTGTGAAAGTA..................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................ACTGGGTACAAAGTTCAGTCC......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTGTGTCCAAAGCGCTTGTGTGAAAGT...................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................AGTCTGTGTCCAAAGCGCTTGTG............................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTTCAGTCTGTGTCCAAAGCG................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............CAATTTAGCATTCTGGCCAT.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GAGAAAAAGCAAGAAACCACTG................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCTGTGTCCAAAGCGCTT................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................TGCCTGTGTGCGTGCGTTCGG..................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTGAAAGTATTCTGATTCGCC......... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTCTGTGTCCAAAGCGCTTGT.............................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGCGCTTGTGTGAAAGTATTCTGA............... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........GATCAATTTAGCATTCTGGCCATTT........................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................AGAAAAAGCAAGAAACCACTG................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGTGCGTGCCTGTGTGTGTGTGA............................................................................................................. 23 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
......TTTGATCGATTTAGCATTT................................................................................................................................................................................................................................. 19 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................CCTGTGGCTGTGTGC............................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................TATTCCGATTCGACCGC...... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
................TTAGCAGTCTGGCCTTTTGG...................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................TGGCTGTGTGTGTGTGAGTGTG........................................................................................................ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................TGTGACTGTGCAGGACG................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGAGTTAAACTAGTTAAATCGTAAGACCGGTAAACTGTTATGTTTAACTCTGAGCAGACGTGACCCATGTTTCAAGTCAGGCACACGTAACCGGACACGGACACACGCACGCAAGCCCGCACACACGGACACACACACACTCACACGTCATGCGTTTACTCTCCTCTTTTTCGTTCTTTGGTGACGGTTAGTAAAAAGTCAGACACAGGTTTCGCGAACACACTTTCATAAGACTAAGCGGGCGGGCGGG
************************************************************************************************************************...(((((((.......((((((((((((.(((....))).)))))))......)))))...))))))).************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M024
male body		 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................GTAAAAAGTCAGACACAGGTT....................................... 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0
...........................CGGTAAACTGTTATGTTT............................................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGAACACACTTTCATAAGACT............... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................GTCATGCGTTTACTCTCCT..................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................GGTGGCGGTTAGTAAAAAGTC.................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................CAGGCACACGTAACCGGACAC........................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAGGCACAGGTTTCGCGAACACA............................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................TTCAAGTCAGGCACACGT.................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTTAGTAAGGAGTCAGACACA........................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GACACAGGTTTCGCGAACAC............................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCAGACACAGGTTTCGCGG................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAGACACAGGTTTCGCGAAC............................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TGGTGACAGTTAGTAA........................................................ 16 1 3 0.33 1 0 0 0 0 1 0 0 0 0
.......................................ATGTTGAACTCTGAGCAG................................................................................................................................................................................................. 18 1 4 0.25 1 0 0 0 0 1 0 0 0 0
...................................................................................CACGTAACCAGGCATGGAC.................................................................................................................................................... 19 3 12 0.17 2 0 0 0 0 0 0 1 1 0
....................................................................................................................................................................TCTTGTTCGTTCTTTG...................................................................... 16 1 8 0.13 1 0 0 0 0 0 1 0 0 0
..................................................TGAGCAGAAGTGACC......................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0
..........................................................................AGTCAGGCACATGTATCAG............................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1
..................................................................................ACACGTAACCAGGCATGG...................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................ATGAGCAGAAGTGACC......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19475215-19475464 + dsi_3402 TCTCA------ATTTGATCAATTTAGCATTC--------TGGCCA-TTTGACAATAC-AAATTGAGACTCGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CCTGTGTGCGTGCGTTCGGG---------------------------CGTGT----GTGCCTG----------TGTGTGTGTGAGTG----------TGCAGTACGCAAA--------TGAGAGG-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTGCCAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-GT----GTGAA---AGTATT-CTGATTCGCCCGCCCGCCC-
droSec2 scaffold_9:2246279-2246531 + TCTCA------ATTTGATCAATTTAGCATTC--------TGGCCA-TTTGACAATAC-AAATTGAGACTCGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CCTGTGTGCGAGCGTTCGGG---------------------------CGTGA----GTGCCTG----------TGTGTGTGTGAGTG----------TGCAGTACGCAAA--------TGAGAGG-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTGCCAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-GT----GTGAAAAAAGTATT-CTGATTCGCCCGCCCGCCC-
dm3 chr2R:18954955-18955204 + TCTCA------ATTTGATCAATTTAGCATTC--------TGGCCA-TTTGACAATAC-AAATTGAGACTCGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CCTGTGTGCGTGCATTCGGG---------------------------CGTGT----GTGCCTG----------TGTGAGTCTGTGTG----------TGCAGTACGCAAA--------TGAGAGG-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTGCCAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-GT----GTGAA---AGTATT-CTGATTCGCCCGCCCGCCC-
droEre2 scaffold_4845:20318240-20318485 + TCTCA------ATTT-ATCAATTTAGCAACTTAGCAACTTAGCAA-TTCGACAATAC-AAATTGAGACTAGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CATGTTTGTGTGCGTTCGGG---------------------------TGCGCGCGGGCGTC--------TGTG----------TGTG----------TGCAGTACGCAAA--------TGAGGCG-------------AGCAA--AAG---A---------A--AA-------A-----CCACTGGCAATCATTTTTCAGTC--TGTGTCCAACGCGCCT-TT----GTGAA---AGTATT-CTGATTCGCCTG-----CC-
droYak3 2R:18917109-18917354 + TCTCA------ATTT-ATCAATTTAGCAACT--------TAGCAG-ATTGACAATAC-AAATTGAGACTCGTCTGCACT---------TGGG---------TACAAAGTT--------CAGTCC-GAG-TGCATT-GGCCTGTG-------------------------CATGTGTGTGTGCGCTCGGG---------------------------TGCGCGGGCGCGTC--------TGTG----------TGTG----------TGCAGTACGCAAA--------TGAGCAA----------ACGAGCAA--AAG---A---------AAAATCCAAA--A-----CCA---CCAATCATTTTTCAGTC--TGTGTCCAAAGCGCCT-GT----GTGAA---AGTATT-CTGATTCGCCTG-----CC-
droEug1 scf7180000409672:6958839-6959049 + TCTCA------ATTT-ATCA-------------------------ATTTAACAATAC-AAATTGAGACTCGTCTGC----------AGTGGG---------TACAAAGTT--------CAATCC-GTG-TGCATT-GGCCTGCG-------------------------CCTGTGTGCGTGAGCCCATA---------TG------------------TGA-TAGGTGTG--------GGTG----------TGTG----------TGCAGTACGCAAA--------TGAGACA-------------AAAAA--AGA----------------CA-------A-----CCATTGCAAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-TT----GTGAA---AGTATT-C-------------GTCCC-
droBia1 scf7180000301754:4254762-4254979 + TCTCA------ATTT-ATCA-------------------------ATTTGGCAATTC-GAACTGAGACTCGTCTGCACTCGTCTGCAGTGGG---------TACAAAGTC--------CAGGCC-GTG-TGCACC-GCCCTGCG-------------------------GCTGTGTGCGTGCCA----G-------------------------------------TGCA--------AGTG----------TGTG----------TGCAGTACGCGAG--------CGAGGAG----------AGGAGAAG--AAG---AAGC------AACAG---AGATT-----CCACTGCAAATCATT-TTCAGTC--TGTGTCCAAGGCGCCC-TT----GTGAA---AGTATT-C----------------CC-
droTak1 scf7180000415672:125529-125755 + TCTCA------ATTT-ATCA-------------------------ATTTGACAATAC-AATTTGTGGCTCGTCTGC----------AGTGGG---------TACAAAGTT--------CGATTC-GTG-TGCATT-CGCCTGTG-------------------------GCTGCCTGTGTGTGC--GTG---------TGCATTAGTT--------------TTGC--TG--------TGTG----------GGTG----------TGCAGTACGCAAA--------TGAGAAA-------------AAAGA--AACAAAAAATAAAAGGAAAAT-------A-----CCATTGCAAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-TT----GTGAA---AGTATT-T---------------CCCA
droEle1 scf7180000490976:65698-65901 + TCTCA------ATTT-ATCA-------------------------ATTTAATAATAA-AAATTGAGACTCGTCTGC----------AGTGGG---------TACAAAGTG--------CAATTT-GTG-TGCATT-GGCCTGTG-------------------------TTGGTGTGAGTGT-CCCGTG---------CGTGTAAGCG--------------CGGG------------------TGTGTGTGTGTG----------TGCAGAACGCAAA--------TGAGAA----------------------------------------AA-------A-----CCATTGCAAATAATTTTTCAGTC--TGTGGCCAAAGCGCTT-TT----GTGAA---AGTAAT-C---------------GCT-
droRho1 scf7180000776932:4310-4515 + TCTCA------ATTT-ATCA-------------------------ATTTAATAATAA-AAATTGAGACTCGTCTGC----------AGTGGG---------TACAAAGTT--------CAATCC-GTG-TGCATT-GGCCTGTG-------------------------TTTGTGTGAGTGCCC--ATG---------CGTGTAAGGG--------------CGGC--CG--------GGTG----------TGTG----------TGCAGTACGCAAA--------TAAGAA----------------------------------------AA-------ACCATTGCATTGCAAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-TT----GTGAA---AGTACT-C---------------CCC-
droFic1 scf7180000454066:2977177-2977383 + TCTCA------ATTT-ATCA-------------------------ATTTAATAATAAAAAATTGAGACTCGTCTGCGTCT----GCAGTGGG---------TACAAAGTT--------CAATCC-GTG-TGCATT-GGCCTGCG-------------------------TCTGTGTGGGTGCAT----G-----------------------------------------------------CGTGTGTGGGTGTG----------TGCAGTTCGCAAA--------TGAGAA------------------A--AAC---G---------A--AA-------A-----CCATTGCAAATCATTTTTCAGTC--TGAGTCCAAAGCGCTT-TT----GTGAA---AGTATT-TT----------CCCGTTC-
droKik1 scf7180000302270:8488-8697 - TCTCGGTACGAATTT-ATCA-------------------------ATTTA---ATAA-AAATTGAGACTCGTCTGC----------AGCGGG---------TACAAAGTT--------CGATCC-GTG-TGCATTCGGCCTGCGCCATAG-------------------TGTGTGTGTGTGGGCTTGTG---------CGTGCAAGTG--------------CGAG----------------------------GG----------AGAGGGAGTG----------TG-CAATATAT-----------------------G---------A--AA-------A-----CCA------AT--TCTTACAGTC--TGTGTCCAAAGCGCTTTTT----GTGAA---AGTATTTCTGTTTCCCCCG--------
droAna3 scaffold_13266:15284656-15284876 + GCACA----AAATTT-ATCA-------------------------ATTTA---ACTC-AAATTGAGACTCGTCTGCATC-----GCAGCGGG---------TGCAAAGTT--------CGATCC-GTG-TGCAGT-GGCCAGTA-------------------------TTCGTA---CTGCGT--ATG--TGTGCAATA--------TACCCAGCCCACT----G--TG--------CGTG----------TGTG----------TGGGG--C-----TGCAGAATTGGGAGCCCAAATGAATGTG-------------------------------------------AATGTGA---ATTTTTCAGTCTCTCTGTCCAA-CCGCTT-TT----GTGCC---AGTTG--------------CACTTCT-
droBip1 scf7180000396547:1763099-1763330 - CACAA-----AATTT-ATCA-------------------------ATTTA---ACTC-AAATTGAGACTCGTCTGCATC-----GCAGCGGG---------TACAAAGTT--------CGATCC-GTG-TGCAGT-GGCCAGTA-------------------------TTCGTATGGGTAC-TGCGTATGTGTATGGTG--------TACCCAGCCCAGT--------G--------TGCG----------TGTG----------TGCGGGAC-----TGCAGAATTG-GAACCCACATGAATACGA--------A----------------TA-------A-----GAATTGTGA---ATTTTGCAGTCTCTCTGTCCAA-CCGCTT-TT----GTGCC---AGTAGC--------------ACCTCT-
dp5 XL_group1e:1946276-1946381 - GTACA---------------------------------------------------------------------------------------------------CAAGTG--------ACGCCT-GTG-TGTGTG-TGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTG---------------------------TGTGT----GTGTGTG----------TGTGTGTGTGTGTG----------TGCAAAAAGTAAT--------TAAATGT-------------CGAAA--A--------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_10:2176216-2176311 - ------------------------------------------------------------------------------------------------------ACAAAGTC--------CGGTTG-CTGCTGCATT-TGCCTGTG-------------------------TGTGTGTGTGTGTGT--GTG-------------------------------T----GTGTGTG----------TGTGTGTG--TGTG----------TGTGG--C-----TACATAAATAAAAGA-------------CGAAA-----------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004902:11384159-11384316 + TCA--------ACTT--TCAATTAAAAGTTT--------CCATTG-TTTGTCCATAC-AAATTGAGTGGCGTTAAC-----------CTGGACGAAATGCATAGAAAGGCTTACCTGACCATCC-GTG-TGTGTG-TGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTG---------------------------TGTGT----GTGTGTG----------TGTGTGTGTGTGTG----------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:9045904-9046099 - TATAT------ATGT-ACCA-------------------------ATTTA---ATTT-AAATT-AAACTCGTCTGCATCCGACA--GTCAGG---------TCCAAAGTT--------CATTTT-TTG-TGCATC-G-CTTACT-------------------------TAGGTGTGCGTTTGCTTTAA---------TG--------TATCTATGTGTGT----GTGTCTG----------TGTGTA----TGTATGTAGATGCATACATGCTG---------------------------------------------------------------------------CTTATAAATTAT--------------ATT-------------------AAA---AATATG-TTG--TCAAATGCCGTTTC-
droMoj3 scaffold_6496:18127055-18127328 + TATTA------ATATGA-ATATATATAGACAGAGAGATGTATCA-ATTTA---ATTT-AAATT-AAACTCGTCTGCATCCGACA--GGCAGG---------TCCAAAGTT--------CATTTTTTTG-TGCAGC-GATTTTTGCTTAAGTGTGCGTCTGCTTTATGTGAATTTGTGTGTAAGCTTGCT---------------------------TGTGT----GTGCCTGTAGGTGTGTGGGTGCGTAGATGCA----------TGCAGAATG--------------ATAAA----------ACGAGAAAGAAAT---A---------AAGA---------------AATTAAAAATTGT--------T--ATTGTCAAATGCCCTT-TTTTTTTTCAA---AGCTC----------------CTCAC-
droGri2 scaffold_15245:14031331-14031485 + ACACA------ATAC-ACAC-ATTCGGATT-----------GCCATTTAAATAAAATAAAATAGTGTCTCGTCTC------------------------------------------------T-GTG-TGTGTG-TGTGTGTG-------------------------TGCGTGTGCGTGCG--TGTG---------------------------TGTGT----GTGCCTG----------TGCGTTTGTGTGGG----------AGTAGCAGAC----------TC-AAAAAAAAGA--------AGAAC--AAA---A---------AAGAA-------A----------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCTCA------ATTTGATCAATTTAGCATTC--------TGGCCA-TTTGACAATAC-AAATTGAGACTCGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CCTGTGTGCGTGCGTTCGGG---------------------------CGTGT----GTGCCTG----------TGTGTGTGTGAGTG----------TGCAGTACGCAAA--------TGAGAGG-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTGCCAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-GT----GTGAA---AGTATT-CTGATTCGCCCGCCCGCCC-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........ATTTGATCAATTTAGCATTC--------TGGCC...................................................................................................................................................................................................................................................................................................................................................................................................2513.00321000000000000000
........................................................C-AAATTGAGACTCGTCTGC----------A........................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................................................................TT-GT----GTGAA---AGTATT-CTGAT...............2011.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTT-GT----GTGAA---AGTATT-CTGATTC.............2311.00100000010000000000
..........................................................AAATTGAGACTCGTCTGC----------ACT......................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GAA---AGTATT-CTGATTCGCC..........1911.00110000000000000000
..........................................................AAATTGAGACTCGTCTGC----------A........................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.................................................................................................................................................................................CGTGCGTTCGGG---------------------------CGTGT----GTGCCTG----------.............................................................................................................................................................................................2411.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GAA---AGTATT-CTGATTCGCCC.........2011.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AGCGCTT-GT----GTGAA---AGTA.......................1811.00100000100000000000
......................................................................................ACTGGG---------TACAAAGTT--------CAGTCC-..................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAAAGCGCTT-GT----GTGAA---AGT........................2711.00100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCTT-GT----G..................................2311.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................TTTCAGTC--TGTGTCCAAAGCG.............................................2111.00110000000000000000
..................CAATTTAGCATTC--------TGGCCA-T................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.....................................................................................................................................................................................................................................................................................................G-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTG.............................................................................2211.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TC--TGTGTCCAAAGCGCTT-.........................................1811.00100010000000000000
..............................................................................................................................................TG-------------------------CCTGTGTGCGTGCGTTCGG...................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................GTGAA---AGTATT-CTGATTCGCC..........2111.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCTT-GT----...................................2211.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................AGCGCTT-GT----GTGAA---AGTATT-CTGA................2411.00110000000000000000
...............GATCAATTTAGCATTC--------TGGCCA-TTT..............................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...................................................................................................................................................................................................................................................................................................................AGAAA--AAG---C---------AAGAA-------A-----CCACTG.............................................................................2111.00100000000000001000
droSec2
TCTCA------ATTTGATCAATTTAGCATTC--------TGGCCA-TTTGACAATAC-AAATTGAGACTCGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CCTGTGTGCGAGCGTTCGGG---------------------------CGTGA----GTGCCTG----------TGTGTGTGTGAGTG----------TGCAGTACGCAAA--------TGAGAGG-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTGCCAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-GT----GTGAAAAAAGTATT-CTGATTCGCCCGCCCGCCC-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCT...........................................1911.0010001
..............................................TTTGACAATAC-AAATTGAGACTCGTCTG....................................................................................................................................................................................................................................................................................................................................................................2811.0011000
......................................................................................................................................................................................................................................................TGTGTGAGTG----------TGCAGTACGCA..........................................................................................................................................................2111.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATT-CTGATTCGCC..........1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................TGTGTCCAAAGCGCTT-GT----GTGAAA.............................2411.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATT-CTGATTCGCCCGCCC.....2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................................TC--TGTGTCCAAAGCGCTT-GT----G..................................2111.0010001
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAAAGCGCTT-GT----GTGAAAA............................2611.0011000
..............................................................................................................................TG-TGCATT-GGCCTGTG-------------------------CCTG..................................................................................................................................................................................................................................................................2011.0011000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCTT-GT----GTGAAAAAAG.........................2711.0010100
............................................................................................................................................................................................................................................................AGTG----------TGCAGTACGCAAA--------TGAG............................................................................................................................................2111.0010010
............................................................ATTGAGACTCGTCTGC----------ACTGGG---------T.........................................................................................................................................................................................................................................................................................................................................2311.0010001
....................................................................................................................................................................................................................................................TGTGTGTGAGTG----------TGCAGTACG............................................................................................................................................................2111.0010100
..............................................................................................................................................................................GTGCGAGCGTTCGGG---------------------------CGTGA----G.............................................................................................................................................................................................................2111.0010001
............................................................................................................................................................................................G---------------------------CGTGA----GTGCCTG----------TGTGTGTT.....................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCTT-GT----GTGAA..............................2211.0011000
.............................................................................................................................................................................TGTGCGAGCGTTCGGG---------------------------CGTGA----..............................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................GTGA----GTGCCTG----------TGTGTGT......................................................................................................................................................................................1840.2510010
........................................................................................................................................................................................................................CGTGA----GTGCCTG----------TGTGTGTGTTT..................................................................................................................................................................................2390.1110100
dm3
TCTCA------ATTTGATCAATTTAGCATTC--------TGGCCA-TTTGACAATAC-AAATTGAGACTCGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CCTGTGTGCGTGCATTCGGG---------------------------CGTGT----GTGCCTG----------TGTGAGTCTGTGTG----------TGCAGTACGCAAA--------TGAGAGG-------------AGAAA--AAG---C---------AAGAA-------A-----CCACTGCCAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-GT----GTGAA---AGTATT-CTGATTCGCCCGCCCGCCC-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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............................................................................................................................................TGTG-------------------------CCTGTGTGCGTGCATTCGGG---------------------------.......................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGCGCTT-GT----GTGAA---AGTATT-CTG.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................ATT-GGCCTGTG-------------------------CCTGTGTGCG............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AATAC-AAATTGAGACTCGTCT.....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCTT-GT----GTGAA---AGT........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................C-AAATTGAGACTCGTCTGC----------ACTGGG---------..........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TTTTTCAGTC--TGTGTCCAAAGCGCTT-.........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCTT-GT----GT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TG----------TGTGAGTCTGTGTG----------TGCAG................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAGCGCTT-GT----GTGAA---AGTG.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................CTGTGTGCGTGCATTCGGG---------------------------C......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CGTGCATTCGGG---------------------------CGTGT----GTGCCTG----------TG...........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TGTGTCCAAAGCGCTT-GT----GTGA...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................AAA--------TGAGAGG-------------AGAAA--AAG---C---------.....................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCGCTT-GT----GTGAA---AGTA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAAGCGCTT-GT----GT.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AGACTCGTCTGC----------ACTGGG---------TA........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TTCGGG---------------------------CGTGT----GTGCCTG----------TGTGAGTC.....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GTGTG----------TGCAGTACGCAAA--------TGAGAGG-------------A...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................CGCTT-GT----GTGAA---AGTATT-CTGAT...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................ATTCGGG---------------------------CGTGT----GTGCCTG----------TGT..........................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CAAAGCGCTT-GT----GTGAA---AGTA.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAGCGCTT-GT----GTGAA---AGTATT-CT..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCGCTT-GT----GTGAA---AGT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AA---AGTATT-CTGATTCGCCCGCCCGCC..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................GT----GTGCCTG----------TGTGAGTCTGTG.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAGCGCTT-GT----GTGAA---AGTA.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TGTGAGTCTGTGTG----------TGCAGTA..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCTT-.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............................................................................................................................................................................................................................................................GTG----------TGCAGTACGCAAA--------TGAGA...........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................CC-GTG-TGCATT-GGCCTGTG-------------------------CCTG..................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TGTGTGCGTGCATTCGGG---------------------------CGTGT----GTG...........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TACAAAGTT--------CAGTCC-GTG-TGCATT-GG.....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................GTGCATTCGGG---------------------------CGTGT----GTG...........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCTT-GT----GTGAA---...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................CGCAAA--------TGAGAGG-------------AGAAA--A....................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TATT-CTGATTCGCCCGCC......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTT-GT----GTGAA---AGTATT-CTG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCTG-.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AGAAA--AAG---C---------AAGAA-------A-----CCA................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................AATCATTTTTCAGTC--TGTGTCCAAAGC..............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAAAGCGCTT-GT----GT.................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCTT-GT----GTGA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCGCTT-GT----GTGAA---A..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTTTCAGTC--TGTGTCCAAAGCGCTT-GT----G..................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...............................................................GAGACTCGTCTGC----------ACTGGG---------..........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TT-GT----GTGAA---AGTATT-CTG.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................CCTGTGTGCGTGCATTCGGG---------------------------C......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCTCA------ATTT-ATCAATTTAGCAACTTAGCAACTTAGCAA-TTCGACAATAC-AAATTGAGACTAGTCTGC----------ACTGGG---------TACAAAGTT--------CAGTCC-GTG-TGCATT-GGCCTGTG-------------------------CATGTTTGTGTGCGTTCGGG---------------------------TGCGCGCGGGCGTC--------TGTG----------TGTG----------TGCAGTACGCAAA--------TGAGGCG-------------AGCAA--AAG---A---------A--AA-------A-----CCACTGGCAATCATTTTTCAGTC--TGTGTCCAACGCGCCT-TT----GTGAA---AGTATT-CTGATTCGCCTG-----CC-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAACGCGCCT-TT----GTGAA---AGT........................2712.0020000110
.............................................................................................................T--------CAGTCC-GTG-TGCATT-GGCCT..................................................................................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................AGTC--TGTGTCCAACGCGCCT-TT----GTG................................2511.0010000010
.............................................................................................................................................................................TTTGTGTGCGTTCGGG---------------------------TGCGCG.................................................................................................................................................................................................................2211.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................GTCCAACGCGCCT-TT----GTGAA---AGTA.......................2411.0010000100
....................................................................................................................................................................................GCGTTCGGG---------------------------TGCGCGCGGG.............................................................................................................................................................................................................1911.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAACGCGCCT-TT----GT.................................2111.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................CGCGCCT-TT----GTGAA---AGTATT-CTGATT..............2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................CT-TT----GTGAA---AGTATT-CTGAT...............2011.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................GTCCAACGCGCCT-TT----GTGAA---AGT........................2311.0010000100
.............................................................................................................................................................................................................................GCGGGCGTC--------TGTG----------TGTG----------TGCA.................................................................................................................................................................2111.0010000100
.............................................................................................................................................................................TTTGTGTGCGTTCGGG---------------------------TG.....................................................................................................................................................................................................................1811.0010100000
droYak3
TCTCA------ATTT-ATCAATTTAGCAACT--------TAGCAG-ATTGACAATAC-AAATTGAGACTCGTCTGCACT---------TGGG---------TACAAAGTT--------CAGTCC-GAG-TGCATT-GGCCTGTG-------------------------CATGTGTGTGTGCGCTCGGG---------------------------TGCGCGGGCGCGTC--------TGTG----------TGTG----------TGCAGTACGCAAA--------TGAGCAA----------ACGAGCAA--AAG---A---------AAAATCCAAA--A-----CCA---CCAATCATTTTTCAGTC--TGTGTCCAAAGCGCCT-GT----GTGAA---AGTATT-CTGATTCGCCTG-----CC-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................CAAAGCGCCT-GT----GTGAA---AGT........................2012.00200000020000
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAAAGCGCCT-GT----GTGAA---...........................2412.00201000010000
..............................................................................................................................................................................................................................................................................................................................................................................................AGCGCCT-GT----GTGAA---AGTATT-CTGATT..............2612.00220000000000
...........................................................................................................................................................................................GG---------------------------TGCGCGGGCGCGTC--------TGTG----------T..................................................................................................................................................................................2111.00100000010000
.............................................................................................................................................................................................................................................................GTG----------TGCAGTACGCAAA--------TGAGCAA----------AC.............................................................................................................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAAAGCGCCT-GT----GTGAA---A..........................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCGCCT-GT----GTGAA---AGT........................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................GTGAA---AGTATT-CTGATTCGCCT.........2211.00101000000000
.............................................................................................................................................................................................................................................................GTG----------TGCAGTACGCAAA--------TGAGCAA----------ACGAGC.........................................................................................................................2911.00100000010000
....................................................................................................................................................................................................................................................................................AAA--------TGAGCAA----------ACGAGCAA--AA...................................................................................................................2011.00100000010000
.........................................................................................................................................GCCTGTG-------------------------CATGTGTGTGTGC.........................................................................................................................................................................................................................................................2011.00100001000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCCT-GT----GT.................................1911.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAAAGCGCCT-GT----GTGAA---AG.........................2611.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAAGCGCCT-GT----GTGAA---AGTAT......................2611.00100000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGAA---AGTATT-CTGATTCGCC..........2011.00110000000000
..................................................................................................................................................................................................................................................................................................................................................................................C--TGTGTCCAAAGCGCCT-GT----GTG................................2211.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTCCAAAGCGCCT-GT----GTG................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................TGTGTCCAAAGCGCCT-GT----GTGAA---A..........................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GT----GTGAA---AGTATT-CTGATT..............1911.00101000000000
............................................................................................................................................................................................G---------------------------TGCGCGGGCGCGTC--------TGTG----------TGTG----------.....................................................................................................................................................................2311.00100000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTATT-CTGATTCGCCTG-----CC-1911.00110000000000
....................ATTTAGCAACT--------TAGCAG-ATT..............................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
TCTCA------ATTT-ATCA-------------------------ATTTAACAATAC-AAATTGAGACTCGTCTGC----------AGTGGG---------TACAAAGTT--------CAATCC-GTG-TGCATT-GGCCTGCG-------------------------CCTGTGTGCGTGAGCCCATA---------TG------------------TGA-TAGGTGTG--------GGTG----------TGTG----------TGCAGTACGCAAA--------TGAGACA-------------AAAAA--AGA----------------CA-------A-----CCATTGCAAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-TT----GTGAA---AGTATT-C-------------GTCCC-SizeHit CountTotal NormTotal
No Reads
droBia1
TCTCA------ATTT-ATCA-------------------------ATTTGGCAATTC-GAACTGAGACTCGTCTGCACTCGTCTGCAGTGGG---------TACAAAGTC--------CAGGCC-GTG-TGCACC-GCCCTGCG-------------------------GCTGTGTGCGTGCCA----G-------------------------------------TGCA--------AGTG----------TGTG----------TGCAGTACGCGAG--------CGAGGAG----------AGGAGAAG--AAG---AAGC------AACAG---AGATT-----CCACTGCAAATCATT-TTCAGTC--TGTGTCCAAGGCGCCC-TT----GTGAA---AGTATT-C----------------CC-SizeHit CountTotal NormTotal
No Reads
droTak1
TCTCA------ATTT-ATCA-------------------------ATTTGACAATAC-AATTTGTGGCTCGTCTGC----------AGTGGG---------TACAAAGTT--------CGATTC-GTG-TGCATT-CGCCTGTG-------------------------GCTGCCTGTGTGTGC--GTG---------TGCATTAGTT--------------TTGC--TG--------TGTG----------GGTG----------TGCAGTACGCAAA--------TGAGAAA-------------AAAGA--AACAAAAAATAAAAGGAAAAT-------A-----CCATTGCAAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-TT----GTGAA---AGTATT-T---------------CCCASizeHit CountTotal NormTotal
No Reads
droEle1
TCTCA------ATTT-ATCA-------------------------ATTTAATAATAA-AAATTGAGACTCGTCTGC----------AGTGGG---------TACAAAGTG--------CAATTT-GTG-TGCATT-GGCCTGTG-------------------------TTGGTGTGAGTGT-CCCGTG---------CGTGTAAGCG--------------CGGG------------------TGTGTGTGTGTG----------TGCAGAACGCAAA--------TGAGAA----------------------------------------AA-------A-----CCATTGCAAATAATTTTTCAGTC--TGTGGCCAAAGCGCTT-TT----GTGAA---AGTAAT-C---------------GCT-SizeHit CountTotal NormTotal
No Reads
droRho1
TCTCA------ATTT-ATCA-------------------------ATTTAATAATAA-AAATTGAGACTCGTCTGC----------AGTGGG---------TACAAAGTT--------CAATCC-GTG-TGCATT-GGCCTGTG-------------------------TTTGTGTGAGTGCCC--ATG---------CGTGTAAGGG--------------CGGC--CG--------GGTG----------TGTG----------TGCAGTACGCAAA--------TAAGAA----------------------------------------AA-------ACCATTGCATTGCAAATCATTTTTCAGTC--TGTGTCCAAAGCGCTT-TT----GTGAA---AGTACT-C---------------CCC-SizeHit CountTotal NormTotal
No Reads
droFic1
TCTCA------ATTT-ATCA-------------------------ATTTAATAATAAAAAATTGAGACTCGTCTGCGTCT----GCAGTGGG---------TACAAAGTT--------CAATCC-GTG-TGCATT-GGCCTGCG-------------------------TCTGTGTGGGTGCAT----G-----------------------------------------------------CGTGTGTGGGTGTG----------TGCAGTTCGCAAA--------TGAGAA------------------A--AAC---G---------A--AA-------A-----CCATTGCAAATCATTTTTCAGTC--TGAGTCCAAAGCGCTT-TT----GTGAA---AGTATT-TT----------CCCGTTC-SizeHit CountTotal NormTotal
No Reads
droKik1
TCTCGGTACGAATTT-ATCA-------------------------ATTTA---ATAA-AAATTGAGACTCGTCTGC----------AGCGGG---------TACAAAGTT--------CGATCC-GTG-TGCATTCGGCCTGCGCCATAG-------------------TGTGTGTGTGTGGGCTTGTG---------CGTGCAAGTG--------------CGAG----------------------------GG----------AGAGGGAGTG----------TG-CAATATAT-----------------------G---------A--AA-------A-----CCA------AT--TCTTACAGTC--TGTGTCCAAAGCGCTTTTT----GTGAA---AGTATTTCTGTTTCCCCCG--------SizeHit CountTotal NormTotal
No Reads
droAna3
GCACA----AAATTT-ATCA-------------------------ATTTA---ACTC-AAATTGAGACTCGTCTGCATC-----GCAGCGGG---------TGCAAAGTT--------CGATCC-GTG-TGCAGT-GGCCAGTA-------------------------TTCGTA---CTGCGT--ATG--TGTGCAATA--------TACCCAGCCCACT----G--TG--------CGTG----------TGTG----------TGGGG--C-----TGCAGAATTGGGAGCCCAAATGAATGTG-------------------------------------------AATGTGA---ATTTTTCAGTCTCTCTGTCCAA-CCGCTT-TT----GTGCC---AGTTG--------------CACTTCT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................T--------CGATCC-GTG-TGCAGT-GGCCAGT................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................C-----TGCAGAATTGGGAGCCCAAATGAA................................................................................................................................2511.001100000
droBip1
CACAA-----AATTT-ATCA-------------------------ATTTA---ACTC-AAATTGAGACTCGTCTGCATC-----GCAGCGGG---------TACAAAGTT--------CGATCC-GTG-TGCAGT-GGCCAGTA-------------------------TTCGTATGGGTAC-TGCGTATGTGTATGGTG--------TACCCAGCCCAGT--------G--------TGCG----------TGTG----------TGCGGGAC-----TGCAGAATTG-GAACCCACATGAATACGA--------A----------------TA-------A-----GAATTGTGA---ATTTTGCAGTCTCTCTGTCCAA-CCGCTT-TT----GTGCC---AGTAGC--------------ACCTCT-SizeHit CountTotal NormTotal
No Reads
dp5
GTACA---------------------------------------------------------------------------------------------------CAAGTG--------ACGCCT-GTG-TGTGTG-TGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTG---------------------------TGTGT----GTGTGTG----------TGTGTGTGTGTGTG----------TGCAAAAAGTAAT--------TAAATGT-------------CGAAA--A--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................CCT-GTG-TGTGTG-TGTGTGTG-------------------------TGTG..................................................................................................................................................................................................................................................................24200.0510001000000
droPer2
------------------------------------------------------------------------------------------------------ACAAAGTC--------CGGTTG-CTGCTGCATT-TGCCTGTG-------------------------TGTGTGTGTGTGTGT--GTG-------------------------------T----GTGTGTG----------TGTGTGTG--TGTG----------TGTGG--C-----TACATAAATAAAAGA-------------CGAAA-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCA--------ACTT--TCAATTAAAAGTTT--------CCATTG-TTTGTCCATAC-AAATTGAGTGGCGTTAAC-----------CTGGACGAAATGCATAGAAAGGCTTACCTGACCATCC-GTG-TGTGTG-TGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTG---------------------------TGTGT----GTGTGTG----------TGTGTGTGTGTGTG----------TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................G-TGTGTG-TGTGTGTG-------------------------TGTGTGTGTGT...........................................................................................................................................................................................................................................................26200.05100100
droVir3
TATAT------ATGT-ACCA-------------------------ATTTA---ATTT-AAATT-AAACTCGTCTGCATCCGACA--GTCAGG---------TCCAAAGTT--------CATTTT-TTG-TGCATC-G-CTTACT-------------------------TAGGTGTGCGTTTGCTTTAA---------TG--------TATCTATGTGTGT----GTGTCTG----------TGTGTA----TGTATGTAGATGCATACATGCTG---------------------------------------------------------------------------CTTATAAATTAT--------------ATT-------------------AAA---AATATG-TTG--TCAAATGCCGTTTC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................T-TTG-TGCATC-G-CTTACT-------------------------TAGGT.................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................TGTAGATGCATACATGCTG---------------------------------------------------------------------------CTT..............................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................TTT-TTG-TGCATC-G-CTTACT-------------------------TAGGTGTGC.............................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGCTTTAA---------TG--------TATCTATGTGTGT----GTT...........................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................TG--------TATCTATGTGTGT----GTGTCT........................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AA---AATATG-TTG--TCAAATGCCG.....2111.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................TCCGACA--GTCAGG---------TCCAAAGTT--------CATT.....................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................AA---------TG--------TATCTATGTGTGT----GTGT..........................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................TGTGTGT----GTGTCTG----------TGTG.........................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
TATTA------ATATGA-ATATATATAGACAGAGAGATGTATCA-ATTTA---ATTT-AAATT-AAACTCGTCTGCATCCGACA--GGCAGG---------TCCAAAGTT--------CATTTTTTTG-TGCAGC-GATTTTTGCTTAAGTGTGCGTCTGCTTTATGTGAATTTGTGTGTAAGCTTGCT---------------------------TGTGT----GTGCCTGTAGGTGTGTGGGTGCGTAGATGCA----------TGCAGAATG--------------ATAAA----------ACGAGAAAGAAAT---A---------AAGA---------------AATTAAAAATTGT--------T--ATTGTCAAATGCCCTT-TTTTTTTTCAA---AGCTC----------------CTCAC-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................TCAAATGCCCTT-TTTTTTTTCAA---AA.........................2511.001000010
droGri2
ACACA------ATAC-ACAC-ATTCGGATT-----------GCCATTTAAATAAAATAAAATAGTGTCTCGTCTC------------------------------------------------T-GTG-TGTGTG-TGTGTGTG-------------------------TGCGTGTGCGTGCG--TGTG---------------------------TGTGT----GTGCCTG----------TGCGTTTGTGTGGG----------AGTAGCAGAC----------TC-AAAAAAAAGA--------AGAAC--AAA---A---------AAGAA-------A----------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................AATAAAATAGTGTCTCGTCTC------------------------------------------------T-GT................................................................................................................................................................................................................................................................................................................2411.00110

Generated: 05/18/2015 at 11:31 AM