ID:

dsi_3376

 Coordinate:

3l:11683301-11683361 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.1 -6.7 -6.2

Flybase annnotation

CDS [3l_11683228_11683300_+]; exon [3l_11683189_11683300_+]; CDS [3l_11683362_11683529_+]; exon [3l_11683362_11683529_+]; intron [3l_11683301_11683361_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------##################################################
AGAAGATGCATTTTATGAAAATTTGACCCTTGGTCTGATAAGAACCCTCTGTAAGTATGAAACTAACAAAAGATTGAAATCCTGTTTGAGTGGATCCTCTTAAACATGCAGCCAATGTGCCAAGAGTATGTAATGTGACGTTGGAGCGACGACAACCTCTG
**************************************************................................((((((((........)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 O001
Testis
 M023
head
 SRR553488
RT_0-2 hours eggs
................................................................................................................................TGTGATGTGACGTTGGAAC.............. 19 2 1 522.00 522 228 206 77 5 3 3 0 0 0 0
................................................................................................................................TGTGATGTGACGTTGGAA............... 18 2 4 88.25 353 154 131 62 5 0 1 0 0 0 0
................................................................................................................................TGTGATGTGACGTTGGAACA............. 20 3 4 58.50 234 120 98 15 0 1 0 0 0 0 0
................................................................................................................................TGTGATGTGACGTTGGA................ 17 1 1 37.00 37 16 12 9 0 0 0 0 0 0 0
................................................................................................................................TGTGATGTGACGTTGGAACAA............ 21 3 1 14.00 14 6 8 0 0 0 0 0 0 0 0
...............................................................................................................................ATGTGATGTGACGTTGGAAC.............. 20 2 1 3.00 3 0 2 1 0 0 0 0 0 0 0
...............................................................................................................................ATGTGATGTGACGTTGGAA............... 19 2 3 2.33 7 1 3 3 0 0 0 0 0 0 0
.............................................................................AATCCTGTTTGAGTGGATCCTC.............................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................AAGGGTATGTAATGTGACGTT................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................GTAATGTGACGTTGGAGCGA............ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................................TGTAATGTGACGTTGGAGCGA............ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................TTGAGATCCTGTTTGA........................................................................ 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTGATGTGACGTTGAA................ 17 2 10 0.20 2 1 1 0 0 0 0 0 0 0 0
.........................................................TGAAACTAACAAAAGT........................................................................................ 16 1 12 0.17 2 0 0 1 0 0 0 0 0 0 1
...........................CCGTGGACTGCTAAGAACC................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................ATGTGATGTGACGCTGGA................ 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
..........................................................................TGAAATCCTGTTTGAA....................................................................... 16 1 13 0.15 2 0 2 0 0 0 0 0 0 0 0
......................................................................................TGAGTGTATCCTCTT............................................................ 15 1 20 0.15 3 0 0 3 0 0 0 0 0 0 0
.........................................................................GTGAAATCCTGTTTGA........................................................................ 16 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................GTGGAACCTCTTAAA......................................................... 15 1 14 0.14 2 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TGTGATGTGACGTTGGAACT............. 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TCTGATGTGACGTTGGAAC.............. 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATGTGACGTTGGAAC.............. 15 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................TGTAATGTGCCGATGGA................ 17 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................TGTGATCTGACGTTGGAAC.............. 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................GGTGATGTGACGTTGGAAC.............. 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TGTGATGTGACGCTGGA................ 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TGTGATTTGACGTTGGAAC.............. 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TATGATGTGACGTTGGAAC.............. 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................GGTGATGTGACGTTGGA................ 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.........................................GAACGGTCTGTAAGTATTA..................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................TGATGTGACGTTGGAA............... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................................AAATCCTGGTTAAGTGG.................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TCTTCTACGTAAAATACTTTTAAACTGGGAACCAGACTATTCTTGGGAGACATTCATACTTTGATTGTTTTCTAACTTTAGGACAAACTCACCTAGGAGAATTTGTACGTCGGTTACACGGTTCTCATACATTACACTGCAACCTCGCTGCTGTTGGAGAC
**************************************************................................((((((((........)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
....................................................................TTTCTAAATTCAGGACAAACTCACCT................................................................... 26 2 1 1.00 1 1 0 0
...................................................CTTCCTACTTTGATTGTTTTGT........................................................................................ 22 3 2 0.50 1 0 1 0
.........................................CTCGGGACACATTCATA....................................................................................................... 17 2 11 0.18 2 0 2 0
..............................................................................................................TGGTTACTCGGATCTCAT................................. 18 3 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:35 AM