ID:

dsi_3354

Coordinate:

3r:4125818-4125967 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-12.3	-12.0	-11.9

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CTTCTTCTTTAAACCGTGTTTTTCGTGCATTAAATATTTTATTTTATATATTTGTACATTACTCCCTGCTTGTAAACCAATAAAATACACAATAACCAGCAAAAAACCCTCCTCAGTTGTTTTATTTTCATTTTTTCGCCCGAATGGCCCAATCTTATCCAGATGTTCTAACCTGTTGCGTTTGATTCTCCAATTGACAGCCGCCACATCCGCATCTGCATCTAAGATTCCACCACGTAAACGCGGCAGA ************************************************................((((.((.....................)).))))...........(((((((..................(((.....)))...........(((((((...........)))))))......)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries	O002 Head	M024 male body	SRR553487 NRT_0-2 hours eggs
.............................................................................................................................................................TCCAGATGTTCTAACCTG...........................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATTCCACCACGTTCCCGCGG....	20	3	5	1.40	7	0	0	5	0	0	2	0
........................................................................................................................................................................................................................TGCATCTAAGATTCCACCACGTAAA.........	25	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................GTTCTAACCTGTTGAGTA....................................................................	18	2	2	1.00	2	0	0	0	2	0	0	0
.............CCGTGTTTTTCGTGCATTAA.........................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................TCCACCACGTTCCCGCGG....	18	3	20	0.50	10	10	0	0	0	0	0	0
....................................TTTTATTGGATATATTTGTAC.................................................................................................................................................................................................	21	2	2	0.50	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................ATTCCACCACGTTACCGTGG....	20	3	3	0.33	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................TTCCACCACGTTCCCGCGG....	19	3	17	0.29	5	0	0	4	0	0	1	0
...........................................................................................................................................................................CCTGTTGAGTTTGACTCT.............................................................	18	2	5	0.20	1	1	0	0	0	0	0	0
...........................................................................................................................................................................CCTGTTGAGCTTGATTCT.............................................................	18	2	5	0.20	1	0	0	0	0	0	1	0
.........................................................................................................................................................................AACCTGTGGCGATTGAATCT.............................................................	20	3	8	0.13	1	0	0	0	0	0	0	1
.....................................................................................................................................................................TTCTAACCTGGTGTGT.....................................................................	16	2	20	0.10	2	0	2	0	0	0	0	0
.....................................................................................................................................................................TTCTAACCTGTTGAGTA....................................................................	17	2	16	0.06	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................TTCCACCACGTACCCGTGG....	19	3	18	0.06	1	0	0	1	0	0	0	0
..........................................................................................................................................................................ACCTGAAGGGTTTGATTCT.............................................................	19	3	19	0.05	1	0	1	0	0	0	0	0
......................................................................................................AGAACCATCGTCAGTTGTT.................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
...................................................................................................................................................................TGTTCAAACCTGTTGAG......................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0
....................................................................................................................................................................GTCCTAACCTGTTGAGTA....................................................................	18	3	20	0.05	1	0	0	0	1	0	0	0

Anti-sense strand reads

GAAGAAGAAATTTGGCACAAAAAGCACGTAATTTATAAAATAAAATATATAAACATGTAATGAGGGACGAACATTTGGTTATTTTATGTGTTATTGGTCGTTTTTTGGGAGGAGTCAACAAAATAAAAGTAAAAAAGCGGGCTTACCGGGTTAGAATAGGTCTACAAGATTGGACAACGCAAACTAAGAGGTTAACTGTCGGCGGTGTAGGCGTAGACGTAGATTCTAAGGTGGTGCATTTGCGCCGTCT ************************************************................((((.((.....................)).))))...........(((((((..................(((.....)))...........(((((((...........)))))))......)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs
.........................................................................................................................................................GAATAGGTCTACAAGATTG..............................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0
....................AAAGGACGTAGTTTATAAAGTAA...............................................................................................................................................................................................................	23	3	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................GGGCTTACCGGGTTAGAATAG...........................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................GGTTAGAATAGGGCTTCAA...................................................................................	19	2	1	1.00	1	0	0	1	0	0	0	0
....................................................................................TATGTGTTATTGCTCGTTTAGT................................................................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0
............................................................TGGGGGACGAACGTTTCG............................................................................................................................................................................	18	3	20	0.20	4	0	0	4	0	0	0	0
...........................................................ATGAGGGACGAACCT................................................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	1	0	0
......................................................................................................TTTTGGGAGGTGTCAACTGAA...............................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0
..................................................................................................................................................AGGGTTAGAATAGGGCT.......................................................................................	17	2	14	0.14	2	0	0	0	0	2	0	0
................................................................................TTTTTATATGTTATTGGTTGTT....................................................................................................................................................	22	3	20	0.10	2	0	2	0	0	0	0	0
................................................................................................................................................................................ACGCAAACAAAGAGGT..........................................................	16	1	10	0.10	1	0	1	0	0	0	0	0
.....................................................................................................................................................GTTAGAATAGGGCTTCA....................................................................................	17	2	15	0.07	1	0	0	0	0	1	0	0
...............................................................................................................................................................GTCTACGAGATTGGCCGAC........................................................................	19	3	18	0.06	1	0	1	0	0	0	0	0
...................................................................................................................................................GGGTTCGAATAGGGCTTC.....................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/23/2015 at 08:39 PM