ID:

dsi_3333

Coordinate:

3l:16114094-16114243 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-29.3	-29.2	-29.2

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

TCGCCTTTGCCAGCGTCGCCCTGATTGTCCTTACCACCCTGCTGGCCATGGTGAGTGTGCATATATTATAATCCGCCGTCTGCATTAATTGCCCGGCCCCATAATATGCTATAAATATTTGAGTGAAGTTTCAAAAAGACATGTCGGAATGTTGCGCATTTTGATTTCATTAAGAGGAAAATTGAGTGTTCATTTATTGCAGCTATTTTTTCATCGTGATTTTCGGTTATCTTAAATAACATTATTGTAG ************************************************(((((((.(((((((((((.....((((...(((.....))).))))...)))))))).........((((((......)))))).......((((((((((...))))))))))....((((........)))).))).)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.................................................................................................................................................................................................................TTCACCGTGATTTTCTGTTAT....................	21	2	1	1.00	1	1	0	0	0	0
..........................................................................AACGTCTGCATTAATTGCC.............................................................................................................................................................	19	2	2	0.50	1	0	1	0	0	0
................................................................................................................................................................................GAAAATTGAGTGTTCA..........................................................	16	0	2	0.50	1	0	1	0	0	0
......................................................................................................................................................................................................GCAGGTCTTTTTTGATCGTGATT.............................	23	3	2	0.50	1	1	0	0	0	0
.......................................................................................................................................AAGACATGTAGGAAT....................................................................................................	15	1	3	0.33	1	0	0	0	1	0
..........................................................................................................................................ACCTGTTGGAATGTTGCG..............................................................................................	18	2	4	0.25	1	0	1	0	0	0
............................................................................................................................................................................TGAGGAAATTAGAGTGTTCA..........................................................	20	3	6	0.17	1	0	0	1	0	0
.....................................................................................................................................AAAAGACATGTCGAAA.....................................................................................................	16	1	7	0.14	1	0	0	1	0	0
................................................................................................................................................CGGAGTGTAGCGCATTCTG.......................................................................................	19	3	15	0.13	2	0	0	0	0	2
...................................................................................................................................AAAAAAGACATGTCGAAA.....................................................................................................	18	2	20	0.10	2	0	0	2	0	0
......................................................................................................................................ATAGACATGTCGGAA.....................................................................................................	15	1	11	0.09	1	0	0	1	0	0
...................................................................................................................................AAAAAAGACATGTCGGAAAA...................................................................................................	20	3	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................................................................TTTTCGGTTATCTAAAAAAAAA.........	22	3	20	0.05	1	0	0	0	1	0

Anti-sense strand reads

AGCGGAAACGGTCGCAGCGGGACTAACAGGAATGGTGGGACGACCGGTACCACTCACACGTATATAATATTAGGCGGCAGACGTAATTAACGGGCCGGGGTATTATACGATATTTATAAACTCACTTCAAAGTTTTTCTGTACAGCCTTACAACGCGTAAAACTAAAGTAATTCTCCTTTTAACTCACAAGTAAATAACGTCGATAAAAAAGTAGCACTAAAAGCCAATAGAATTTATTGTAATAACATC ************************************************(((((((.(((((((((((.....((((...(((.....))).))))...)))))))).........((((((......)))))).......((((((((((...))))))))))....((((........)))).))).)))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M025 embryo
.................................................................................................................................AAGTTTTTCTGTACA..........................................................................................................	15	0	4	1.50	6	0	3	3	0	0	0	0
.............GCAGCGGGACTAACAGGAATGGT......................................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
.....................ACTAACAGGAATGGTGGGACGAC..............................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
..........GTCGCAGCGGGACTAACAGGAATGGT......................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................AACTGAAGTACTTCTCCTTTG.....................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0
...........................................................................................................................................GGACAGCCTTACAAC................................................................................................	15	1	7	0.29	2	0	0	0	0	2	0	0
...............................ATGTTGGGACGACCG............................................................................................................................................................................................................	15	1	4	0.25	1	0	0	0	1	0	0	0
..CGGGAACGGTCGCAGAGG......................................................................................................................................................................................................................................	18	2	10	0.20	2	0	0	0	0	0	2	0
.............................................................................................................................ATCAATGTTTTTCTGTAC...........................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	1
............................................................TATAAAATATTAGGC...............................................................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0
.CCGGGAACGGTCGCAGAGG......................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................ACAGCGCGCAAAACTAA....................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/24/2015 at 02:10 AM