ID:

dsi_3318

 Coordinate:

3r:17808775-17808950 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.3 -20.0 -19.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATGCCAGGTCCAACGGTATCTTTCTTTAACTTATATATTCAACGAAGCAGGTAAGTAAACTGCATGAACACATAAACACACATACTTTTGGGCTCATTCGTGTATGTCCTGGCATCCAAAACCAAACATAACCAGCAGAGGGAGCGGAGAGTACAACTCCAAGCATACCCATCAGCAGCCTCAGACCCAAACCGATCCTCACTAGCCTTCTCGTCCTGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
***************************************************************************************..(((((........(((((..(((.........))).)))))....((.(((((.((((((.......))))..))...))).)).))))))).********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.......................................................................................................................................................................................................................CTGTATTGTAGTCGCACCCGG........................................ 21 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCCTGTATTGTAGTCGCACCC.......................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................TTGGGCTCATTCGTGTATGTC........................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAGCATACCCATCAGCAGCCTC.............................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................CATGAACACATAAACACACAT................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTGTCGTGCATTGTAGTCGCA............................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTATTGTAGTCGCACCCGG........................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................AAACACACATACTTTTGGGCT...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAAACCGATCCTCACTAGCCT.................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................CGTGTATGTCCTGGCATCC............................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTGTATTGTAGTCGCACCCG......................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACTAGCCTTCTCGTCCTG.......................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................AGGGCAAGCTGGAGTTCA........ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................TAAGTAAACTGCATGAACACATA.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................GTGCATTGTAGTCGCACC........................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
......................................................CTAAACTGCATGAACACC............................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
ATGCCAGGTCCAGCG..................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TAAGAGGGAGCGGAGAGTAAAA........................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.....................TTCGTTAACTTATATA............................................................................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0
...........................CACTTATGTATTCAACGA....................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0
ATGCCAGGTCCAGCGGA................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTTGTATGGTAGTAGCA............................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................GGTTCCCGGGCAAGCG................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................CGGAGGGCGCGGTGAGTAC.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TACGGTCCAGGTTGCCATAGAAAGAAATTGAATATATAAGTTGCTTCGTCCATTCATTTGACGTACTTGTGTATTTGTGTGTATGAAAACCCGAGTAAGCACATACAGGACCGTAGGTTTTGGTTTGTATTGGTCGTCTCCCTCGCCTCTCATGTTGAGGTTCGTATGGGTAGTCGTCGGAGTCTGGGTTTGGCTAGGAGTGATCGGAAGAGCAGGACATAACATCAGCGTGGGCCGCTCGTGACCAAGGTCCCGTTCGACCTCAAGTACGACTCG
**********************************************************************************************..(((((........(((((..(((.........))).)))))....((.(((((.((((((.......))))..))...))).)).))))))).*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
..........................................................................................CCGAGTAAGCACATACAGGAC..................................................................................................................................................................... 21 0 1 6.00 6 4 2 0 0 0 0 0
....GTCCAGGTTGCCATAGAAAGA........................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
....GTCCAGGTTGCCATAGAAAGAA.......................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................CCGAGTGAGCACATACAGGAC..................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..CGGTCCAGGTTGCCATAGAAA............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................CGGTTTGTATTGGTCGTCT......................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................GTGTATTTGTGTGTATGAAAA........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................................TCAGGTTCGTATGGGCAGTAGT................................................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTGGCTAGGAGTGATCGGAAG.................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
......CCAGGTTGCCATAGAAAGAAAT........................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................CCGTAGGTTTTGGTTTGTATT................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................CACATACAGGACCGTAGGTTT............................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................................................................GTAGTCGTCGGAGTCTGGGT....................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0
....................................TAAGTTGCATCGTCCATTCATT.......................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................TGGGCCGCTCGTGACCAAGGT......................... 21 0 1 1.00 1 0 0 0 0 0 1 0
...........................................................................................CGAGTAAGCACATACAGGACC.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................CAGAGTGAGCACATACAGGAC..................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................TATGGGTAGTCGTCGGAGTCT........................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................TGGGTTGTCGTCGGAGT............................................................................................. 17 1 5 0.20 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................TTGGCTAGGAGAGATTGAAA................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0
TACGGTCCAGGTCGC..................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0 0 0
................................................................................................................GGAGATTTTGGTTTGTATTG................................................................................................................................................ 20 2 7 0.14 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:17808725-17809000 + dsi_3318 ATG----------------CCAGGTCCAACGGTATC-----TTTCTTTAACTTATATATT--------------------CAAC----GAAGCAGGTAAGTA------------A---ACTGCATGA-AC--------------ACATAA--ACAC------ACATACTTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CCAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGACCCA-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droSec2 scaffold_0:18638663-18638937 + ATG----------------CCAGGTCCAAAGGTATC-----TTTCTTTAACTTATATATT--------------------CAAC----GAAGCAGGTAAGTA------------A---ACTGCATGA-AC--------------ACATAA--ACAC------ACATACTTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------ACAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGACCCA-AACCGATCCTCACTAGC------------TTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGAAAGCTGGAGTTCATGCTGAGC
dm3 chr3R:18285332-18285613 + ATG----------------CCAGGTCCAATGGTATC-----TTTCTTTAACTTATAAATT--------------------CAAC----GAAGCAGGTAAGTA------------AACTAATGCATGA-AC--------------ACATAA--ACAC------ACATAATTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CCAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A---------------------------------------------------------CCCCCCATC--AGC---A-------------------------------------------------------GA------A-------TCAGACCCA-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droEre2 scaffold_4820:9792005-9792277 - ATA----------------CCAGGTCCAAAAATATCT---------TTAACTGATATG--------------------AGCAACG-----AGCAGGTAAGTA------------A---ACTGCATGACAC--------------ACATAA--ACAC------ACATAATTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------ACAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGACCCAAAACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droYak3 3R:19130888-19131160 + ATA----------------CCAGGTCCAAAGGTATCT---------TTAACTTATACA--------------------ATCACCG-----AACAGGTAAGTG------------A---ACTGCATGACAC--------------ACATAA--ACAC------ACATAATTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CCAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGTCCCAAAACCGATGCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droEug1 scf7180000409768:408550-408824 + ATA----------------TCAGGTCCAAAGGGATCCGTAATTTCTTTAAC------A--------------------ACCTCCT-----GGCAGGTAAGTG------------A---AATGCATGACTC--------------ACATAA--ACAT------ACATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CAAAA-CCA---------------AAACATAACCA-------AC----CAAGG-----GA-GC----------------------GGAGAGTTCAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A---------G---------------------------------------------GC------C-------TCAGTCCCA-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTCTTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTTATGCTAAGC
droBia1 scf7180000302402:5447043-5447312 - GTG----------------TCAGATCTCAAGTGTTAT---------TTAATTCCTGTA--------------------ACCACCT-----GGCAGGTAAGTG------------A---AATGCATGACTC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTACGTCCCGG--CATC-----------CAAAA-----------------CCAACCATAACCA-------AC----CGAGG-----GA-AC----------------------GGAGCAAACCACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------AC------C-------TCAGACCCG-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTCTTGTAGTCGCACCCGGCGAGCACTGGTTCAAGGGCAAACTGGAGTTCATGCTGAGC
droTak1 scf7180000415711:747933-748177 - A--------------------AGATCTAATGGGATAT---------TTAACATCTATA------------------------AC-----AAGCTGGTAAGTA------------A---ACTGCATGAAAC--------------ACATAAAAACAC------ACATAT-TCTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CAAAA-CCA---------------AAACATAACCA-------AG----CGAGG-----GA-----------------------------------------------------------T-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCA--CCCG-AACCGATCCTCACCAGC-----------CTTCT-C--GTCCTCT-CGTCCTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droEle1 scf7180000491280:4494623-4494858 - ATA----------------TCAAGTGCAATGGGATC-----GTGCTA-------TATA------------------------------AAACCAGGTAAGTA------------C---CTTGCATGACAC--------------ACATAAACACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-TGA--------------AAAACATAACCA-------ACCAACCGAGG-----GA-AC----------------------AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TAAGAGCCG-TACAGATCCTCACCAGC-----------CTTCT-C-CGTCC--------TTCTAGTCCCACCCGGTGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droRho1 scf7180000779677:138030-138280 + ATGTATTGAACTTATAATATCAGGTCCAAAGGGATTT---------CTACTTTATATT--------------------ACCACCT-----AGCAGGTAAGTA------------C---CCTGCATGACAC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATT-----------CAAAA-----------------GAAAACATTACCA-------AC----CGAGG-----GA-----------------------------------------------------------------------------------------------------------------------------------GC---A-------------------------------------------------------GC------C-------TCAGACCCG-AACCGATCCTCACCAGC-----------CTTCT-C--GTCC--------TTCTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droFic1 scf7180000454106:1430705-1430940 + AGC--------TTATGGCACGAGGTGCG-------------------------------------------------------------AAGCAGGTGAGT-------------A---ACTGCATGAAAC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------AAA---CCAAACCAATCCCAAACAAAACATTACCC-------AC----CGGGG-----CA-GC----------------------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCC-------TCAGACCCG-AACCGATCCTCACCAGC-----------CTTCT-C--GTCC----TGTCTTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGC
droKik1 scf7180000302706:1508486-1508800 + ATA----------------TCCGGTCCAAGTTGATT------TGCTTT--------TATTCTACGCATCCTCCTAACCACCACCT-----GGCAGGTAAGTA------------A---ATTGCATGACAC--ACACATATACACACAAAA--ACACACACACACATAA--TTGGGCTCATTCGTGTACGTCCTGGCGCATC-----------CAAAA-CAA--------------AACACATAACCG-------AT----AGAGA-GATGGA-GC----------------------GTAGAGTTCAACTCT------A--------GACAT-A------------------------------------------------------------CTCATCGGAGC---A-------------------------------------------------------GCCGA---C-------TC-GATCCG-TACCGATCCTCACCAGT-----------TTTCT-C--GTCC----TATCTTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTCAGC
droAna3 scaffold_13340:14839146-14839238 + -------------------------------------------------------------------------------------------GCAGGTAAGTC------------G---ATTGCATGACAC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATT-----------CAAAA------------------CAAACATAACCA-------A------GAGG------A-G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395971:342829-343190 - TAG----------------ATAAGTGGGATAATATC-----------------------------------------------CT-----GGCAGGTAAGTC------------G---ATTGCATGAAAC--------------ACATAAAAACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATT-----------GAAAAACCAA------------ACAAACATAACCA-------AG----AG--G------AGATTAGCCATCCGATAGAGATAAGCAAGTAGCACTACTCC------ATCGAATGGAGCATTA---------------------------------------------------------CTAACCATTG-AGGATTAACCTTTGAAGGATTCCTTGTGTCTTGGTAATGCGAAATTCAATTGGGTATTGACGGCTTGTGCTTGTGAACCGAACCCCG-TACCGATCCTCACCAGC-----------TTTCT-T--GTA-----TGTCTTGTAGTAGCACCCGGCGAACACTGGTTCGAGGGCAAGCTGGAGTTCATGCTGAGC
dp5 2:13794878-13795181 - ------------------------TCTAAGGGTATGC----TCT--CCA-C-TAAACAT------------------------CCGGTCCGTCAGGTAAGTCCG----------A---TCTGCATGACACCTACACCTACACACACACAA--ACATACATAC-AATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CCAAA--------------------AACATAACCTCAAAGAAAG----TAAAGAAACGAT-CC---------------------------ATAGACCTCC-----CA--------C-------ACATACACACACAAACACAAGCAG-------------------------------AATCCACAAC--AGC---A-------------------------------------------------------GC------C-------TC--------------TCCTCAACTGC-----------AATCT-T--GTCCACTCTGTATTATAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAACTGGAGTTCATGCTGAGC
droPer2 scaffold_0:6651358-6651665 + ------------------------TCTAAGGGTATGC----TCT--CCA-C-T----A--------------------ACCATCCGGTCCGTCAGGTAAGTCCG----------A---TCTGCATGACACCTACACCTACACACACACAA--ACATACATAC-AATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CCAAA--------------------AACATAACCTCAAAGAAAG----TAAAGAAACGAT-CC-----------------------AACGATCCACCTCC-----CA--------C-------CCATACACACACACACACAAGCAG-------------------------------AATCCACAAC--AGC---A-------------------------------------------------------GC------C-------TC--------------TCCTCAACTGC-----------AATCT-T--GTCCACTCTGTATTATAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAACTGGAGTTCATGCTGAGT
droWil2 scf2_1100000004902:2753389-2753628 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGCTCATTCGTGTACGTCCTGA--CATC-----------GAACA-----------------AAACATCTAACAC-------AT----TCAGG-----AA-AC----------------------TCACCATACACATTC------A--------CA-------AAACCACACACACACACAAACAAATAAAAACCGTCCTAGTCAAACAAA---TTG-----AGATC--TAG---A---------G---------------------------------------------AT------C-------TCAAT-----------TCCTCAATCGTTTGCCAATCGTTTTACATATATAT----TGTATTATAGTCGCACCCGGCGAACATTGGTTCCAAGGCAAACTGGAGTTTATGCTTAGT
droVir3 scaffold_12822:666958-667133 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCTCATTTGTGAATGTCCAGC--CATC-----------A------------------------AACATAACCT---------------------------------------------------------------AC------A--------CTCAT-ACACATCTAGACACACACACAAGCACACACA---CCCAC-------ACATGTACATG-------------------------------------------------------------------------------------------------------CGCTCAATCCTGCC-----------AATCT-T--GTG-----TATATTGTAGTCGCACCCGGCGAACACTGGTTTCAAGGCAAGCTCGAGTTTATGCTGAGT
droMoj3 scaffold_6540:33322105-33322365 - ATC------------------GTGCCTTAAGATAGCT---------TTA---------------------------------AG----CAATCAGGTAAGTCCTAACTCATGGTA---ATTGCATGAGAC--------------TT----------------TAATAA--TGGGGCTCATTTGTGAATGTCCAGT--CATCAATCAGTCATCC------------------------AA--TCACAC---------------------------------------------------------------ACACTCAC---------------ACCCACCCACACACACACACACACACAGAGACAACGCAC-------ACACACATATA-------------------------------------------------------------------------------------------------------CTTTCAATGCTGGC-----------TATCT-T--GTG-----TATATTGTAGTCGCACCTGGCGAGCATTGGTTCCAAGGCAAGCTCGAGTTCATGCTGAGC
droGri2 scaffold_15074:3119002-3119180 + ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGGCTCATTTGTGAATGTCCG-A--AATC----CGTCATCA------------------------AACAT--CTT---------------------------------------------------------------ATACTCAC---------------ACAC------------ACACCAG-ACACACA---CTCAC-------ACACACACATA-------------------------------------------------------------------------------------------------------CGCTGAATTGTTGC----CAA----AATCT-TGTGTAT----TATTTTATAGTCGCACCCGGCGAACACTGGTTTCAAGGCAAGCTCGAGTTTATGCTGAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATG----------------CCAGGTCCAACGGTATC-----TTTCTTTAACTTATATATT--------------------CAAC----GAAGCAGGTAAGTA------------A---ACTGCATGA-AC--------------ACATAA--ACAC------ACATACTTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CCAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGACCCA-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGTATTGTAGTCGCACCCGG........................................2114.00431000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC----TGTATTGTAGTCGCACCC..........................................2112.00220000000000000000
..........................................................................................................................................................................TTGGGCTCATTCGTGTATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
..............................................................................................................................................................................................................................................................................................................................A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TC.................................................................................................................2211.00100000100000000000
..........................................................................................................................CATGA-AC--------------ACATAA--ACAC------ACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATTGTAGTCGCACCCGG........................................2011.00110000000000000000
....................................................................................................................................................AA--ACAC------ACATACTTTTGGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AACCGATCCTCACTAGC-----------CT...........................................................................2111.00100010000000000000
.....................................................................................................................................................................................CGTGTATGTCCTGG--CATC-----------C..............................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGTATTGTAGTCGCACCCG.........................................2011.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGC-----------CTTCT-C--GTCC----TG..........................................................1811.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAAGCTGGAGTTCA........1811.00100000100000000000
................................................................................................TAAGTA------------A---ACTGCATGA-AC--------------ACATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
droSec2
ATG----------------CCAGGTCCAAAGGTATC-----TTTCTTTAACTTATATATT--------------------CAAC----GAAGCAGGTAAGTA------------A---ACTGCATGA-AC--------------ACATAA--ACAC------ACATACTTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------ACAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGACCCA-AACCGATCCTCACTAGC------------TTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGAAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................CATACTTTTGGGCTCATTCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----TGTATTGTAGTCGCACCCG.........................................2111.0011000
........................................................................................................................................................................TTTTGGGCTCATTCGTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.........................................................................................................................................................................TTTGGGCTCATTCGTGTATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.............................................................................................................................................................................................................................................AACATAACCA-------GC----AGAGG-----GA-GC----------------------..........................................................................................................................................................................................................................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AACCGATCCTCACTAGC------------TT..........................................................................2111.0010001
dm3
ATG----------------CCAGGTCCAATGGTATC-----TTTCTTTAACTTATAAATT--------------------CAAC----GAAGCAGGTAAGTA------------AACTAATGCATGA-AC--------------ACATAA--ACAC------ACATAATTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CCAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A---------------------------------------------------------CCCCCCATC--AGC---A-------------------------------------------------------GA------A-------TCAGACCCA-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................TTTGGGCTCATTCGTGTATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000300100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AACCGATCCTCACTAGC-----------CTT..........................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGC-----------CTTCT-C--GTCC----TGTATT......................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CGTGTATGTCCTGG--CATC-----------CA.............................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200
..................................................................................................................................................................ACATAATTTTGGGCTCATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACCCGGCGAGCACTGGTTC...........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGC-----------CTTCT-C--GTCC----TGTATTG.....................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TTTTGGGCTCATTCGTGTATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AACCA-------GC----AGAGG-----GA-GC----------------------GGAGA.....................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTAGTCGCACCCGGCGAGCATC................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACTGGTTCCAGGGCAAGC.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ATAATTTTGGGCTCATTCGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GTCC----TGTATTGTAGTCGC..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GTCC----TGTATTGTAGTCGCACC...........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGTTCCAGGGCAAGCTGGA.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCGCACCCGGCGAGCACTGGT.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAAGCTGGAGTTCATGCTG...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGATCCTCACTAGC-----------CTTC.........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TTTGGGCTCATTCGTGTATGTCCTGG--..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGTTCCAGGGCAAGCTGGAGT...........2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----------CTTCT-C--GTCC----TGTATTGTAGT.................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTG.....................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................AACTCC------A--------AGCAT-A---------------------------------------------------------CCCCCCA.....................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................C------ACATAATTTTGGGCTCATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----TGTATTGTAGTCGCACCCGGCGAG....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................TTATAAATT--------------------CAAC----GAAGCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACTGGTTCCAGGGTT....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCACTGGTTCCAGGGCA....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................GA-GC----------------------GGAGAGTACAACTCC------A--------AGCA........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GCTCATTCGTGTATGTCCTGG--C.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCACTGGTTCCAGGGCA....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................AATT--------------------CAAC----GAAGCAGGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................TATAAATT--------------------CAAC----GAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCACTGGTTCCAGGG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGCACTGGTTCCAGGGCAA...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAACTTATAAATT--------------------CAAC----GAAGCAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TC-----------CAAAA-----------------CCAAACATAACC.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ACCA-------GC----AGAGG-----GA-GC----------------------GGAGAG....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................TTTAACTTATAAATT--------------------CAAC----GAAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGCGAGCACTGGTTCCAGGGCAAGC.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCA-AACCGATCCTCACTAGC-----------CTTC.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGTCGCACCCGGCGAGCACTGGTT............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TATAAATT--------------------CAAC----GAAGCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTGGGCTCATTCGTGTATGTT....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCAAGCTGGAGTTCATGCTGA..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGAGCACTGGTTCCA.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACTGGTTCCAGGGCAAGC.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................AAACATAACCA-------GC----AGAGG-----GA-G.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TT--------------------CAAC----GAAGCAGGTAAGTA------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGTATTGTAGTCGCACCCG.........................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ATAACCA-------GC----AGAGG-----GA-GC----------------------GG........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................C---A-------------------------------------------------------GA------A-------TCAGACCCA-AACCGAT..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----TGTATTGTAGTCGCACCCGG........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGC-----------CTTCT-C--GTCC----TGTATTGT....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGC-----------CTTCT-C--GTCC----TGTATTGTAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GTACAACTCC------A--------AGCAT-A---------------------------------------------------------CCCC........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGAGTTCATGCTGAGC1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................A-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCG------.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATTCGTGTATGTCCTGG--CATC-----------...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------GA------A-------TCAGACCCA-AACCGATC.................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTCGTGTATGTCCTGG--CATC-----------C..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AAATT--------------------CAAC----GAAGCAGGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GG........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TA------------AACTAATGCATGA-AC--------------ACAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------.....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGT...................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGTAGTCGCACCCGGCGT.....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGC-----------CTTCT-C--GTCC----TG..........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTGGGCTCATTCGTGTATGTC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................AACCA-------GC----AGAGG-----GA-GC----------------------GGAG......................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................GC----AGAGG-----GA-GC----------------------GGAGAA....................................................................................................................................................................................................................................................................................................1730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATA----------------CCAGGTCCAAAAATATCT---------TTAACTGATATG--------------------AGCAACG-----AGCAGGTAAGTA------------A---ACTGCATGACAC--------------ACATAA--ACAC------ACATAATTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------ACAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGACCCAAAACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACTGGTTCCAGGGCA....................2011.0010000100
.......................................................ATG--------------------AGCAACG-----AGCAGGTAAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
ATA----------------CCAGGTCCAAAGGTATCT---------TTAACTTATACA--------------------ATCACCG-----AACAGGTAAGTG------------A---ACTGCATGACAC--------------ACATAA--ACAC------ACATAATTTTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CCAAACATAACCA-------GC----AGAGG-----GA-GC----------------------GGAGAGTACAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCAGTCCCAAAACCGATGCTCACTAGC-----------CTTCT-C--GTCC----TGTATTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................TC--AGC---A-------------------------------------------------------GC------C-------TCAGTCCCAAAACCGATGC................................................................................................2811.00101000000000
..................................................................................................................................................................................................................................................AACCA-------GC----AGAGG-----GA-GC----------------------GGAGA.....................................................................................................................................................................................................................................................................................................2111.00100000010000
..................................................................................................................................................................................ATTCGTGTATGTCCTGG--CATC-----------CAAAA-----------------CC.......................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTCCAGGGCAAGCTGGAGT...........2411.00100010000000
droEug1
ATA----------------TCAGGTCCAAAGGGATCCGTAATTTCTTTAAC------A--------------------ACCTCCT-----GGCAGGTAAGTG------------A---AATGCATGACTC--------------ACATAA--ACAT------ACATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CAAAA-CCA---------------AAACATAACCA-------AC----CAAGG-----GA-GC----------------------GGAGAGTTCAACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A---------G---------------------------------------------GC------C-------TCAGTCCCA-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTCTTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTTATGCTAAGCSizeHit CountTotal NormTotal
No Reads
droBia1
GTG----------------TCAGATCTCAAGTGTTAT---------TTAATTCCTGTA--------------------ACCACCT-----GGCAGGTAAGTG------------A---AATGCATGACTC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTACGTCCCGG--CATC-----------CAAAA-----------------CCAACCATAACCA-------AC----CGAGG-----GA-AC----------------------GGAGCAAACCACTCC------A--------AGCAT-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------AC------C-------TCAGACCCG-AACCGATCCTCACTAGC-----------CTTCT-C--GTCC----TGTCTTGTAGTCGCACCCGGCGAGCACTGGTTCAAGGGCAAACTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotal
No Reads
droTak1
A--------------------AGATCTAATGGGATAT---------TTAACATCTATA------------------------AC-----AAGCTGGTAAGTA------------A---ACTGCATGAAAC--------------ACATAAAAACAC------ACATAT-TCTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CAAAA-CCA---------------AAACATAACCA-------AG----CGAGG-----GA-----------------------------------------------------------T-A------------------------------------------------------------CCCATC--AGC---A-------------------------------------------------------GC------C-------TCA--CCCG-AACCGATCCTCACCAGC-----------CTTCT-C--GTCCTCT-CGTCCTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotal
No Reads
droEle1
ATA----------------TCAAGTGCAATGGGATC-----GTGCTA-------TATA------------------------------AAACCAGGTAAGTA------------C---CTTGCATGACAC--------------ACATAAACACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATC-----------CAAAA-TGA--------------AAAACATAACCA-------ACCAACCGAGG-----GA-AC----------------------AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------TAAGAGCCG-TACAGATCCTCACCAGC-----------CTTCT-C-CGTCC--------TTCTAGTCCCACCCGGTGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotal
No Reads
droRho1
ATGTATTGAACTTATAATATCAGGTCCAAAGGGATTT---------CTACTTTATATT--------------------ACCACCT-----AGCAGGTAAGTA------------C---CCTGCATGACAC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATT-----------CAAAA-----------------GAAAACATTACCA-------AC----CGAGG-----GA-----------------------------------------------------------------------------------------------------------------------------------GC---A-------------------------------------------------------GC------C-------TCAGACCCG-AACCGATCCTCACCAGC-----------CTTCT-C--GTCC--------TTCTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotal
No Reads
droFic1
AGC--------TTATGGCACGAGGTGCG-------------------------------------------------------------AAGCAGGTGAGT-------------A---ACTGCATGAAAC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------AAA---CCAAACCAATCCCAAACAAAACATTACCC-------AC----CGGGG-----CA-GC----------------------TC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCC-------TCAGACCCG-AACCGATCCTCACCAGC-----------CTTCT-C--GTCC----TGTCTTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotal
No Reads
droKik1
ATA----------------TCCGGTCCAAGTTGATT------TGCTTT--------TATTCTACGCATCCTCCTAACCACCACCT-----GGCAGGTAAGTA------------A---ATTGCATGACAC--ACACATATACACACAAAA--ACACACACACACATAA--TTGGGCTCATTCGTGTACGTCCTGGCGCATC-----------CAAAA-CAA--------------AACACATAACCG-------AT----AGAGA-GATGGA-GC----------------------GTAGAGTTCAACTCT------A--------GACAT-A------------------------------------------------------------CTCATCGGAGC---A-------------------------------------------------------GCCGA---C-------TC-GATCCG-TACCGATCCTCACCAGT-----------TTTCT-C--GTCC----TATCTTGTAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAGCTGGAGTTCATGCTCAGCSizeHit CountTotal NormTotal
No Reads
droAna3
-------------------------------------------------------------------------------------------GCAGGTAAGTC------------G---ATTGCATGACAC--------------ACATAA--ACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATT-----------CAAAA------------------CAAACATAACCA-------A------GAGG------A-G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAG----------------ATAAGTGGGATAATATC-----------------------------------------------CT-----GGCAGGTAAGTC------------G---ATTGCATGAAAC--------------ACATAAAAACAC------ACATAA--TTGGGCTCATTCGTGTATGTCCTGG--CATT-----------GAAAAACCAA------------ACAAACATAACCA-------AG----AG--G------AGATTAGCCATCCGATAGAGATAAGCAAGTAGCACTACTCC------ATCGAATGGAGCATTA---------------------------------------------------------CTAACCATTG-AGGATTAACCTTTGAAGGATTCCTTGTGTCTTGGTAATGCGAAATTCAATTGGGTATTGACGGCTTGTGCTTGTGAACCGAACCCCG-TACCGATCCTCACCAGC-----------TTTCT-T--GTA-----TGTCTTGTAGTAGCACCCGGCGAACACTGGTTCGAGGGCAAGCTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotal
No Reads
dp5
------------------------TCTAAGGGTATGC----TCT--CCA-C-TAAACAT------------------------CCGGTCCGTCAGGTAAGTCCG----------A---TCTGCATGACACCTACACCTACACACACACAA--ACATACATAC-AATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CCAAA--------------------AACATAACCTCAAAGAAAG----TAAAGAAACGAT-CC---------------------------ATAGACCTCC-----CA--------C-------ACATACACACACAAACACAAGCAG-------------------------------AATCCACAAC--AGC---A-------------------------------------------------------GC------C-------TC--------------TCCTCAACTGC-----------AATCT-T--GTCCACTCTGTATTATAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAACTGGAGTTCATGCTGAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACTGGAGTTCATGCTG...2011.0010100000000
....................................................................................................................................................................................................................................................................TAAAGAAACGAT-CC---------------------------ATAGAC...............................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................CCA-C-TAAACAT------------------------CCGGTCCGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCACTGGTTCCAGGGC.....................1911.0010100000000
..............................................................................................................................................................ATAC-AATAA--TTGGGCTCATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACTGGAGTTCATGCTGA..2111.0010100000000
.............................................................................................................................................................................GGCTCATTCGTGTACGTCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGAGTTCATGCTGAG.1811.0010100000000
................................................................................................................................................................................TCATTCGTGTACGTCCTGG--C.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................TGC----TCT--CCA-C-TAAACAT------------------------CCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................ACACCTACACCTACACACACACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310100000000
..............................................................................................................................ACACCTACACCTACACACACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510010000000
droPer2
------------------------TCTAAGGGTATGC----TCT--CCA-C-T----A--------------------ACCATCCGGTCCGTCAGGTAAGTCCG----------A---TCTGCATGACACCTACACCTACACACACACAA--ACATACATAC-AATAA--TTGGGCTCATTCGTGTACGTCCTGG--CATC-----------CCAAA--------------------AACATAACCTCAAAGAAAG----TAAAGAAACGAT-CC-----------------------AACGATCCACCTCC-----CA--------C-------CCATACACACACACACACAAGCAG-------------------------------AATCCACAAC--AGC---A-------------------------------------------------------GC------C-------TC--------------TCCTCAACTGC-----------AATCT-T--GTCCACTCTGTATTATAGTCGCACCCGGCGAGCACTGGTTCCAGGGCAAACTGGAGTTCATGCTGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................CGTCAGGTAAGTCCG----------A---TC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
................................................................................................................................................................................TCATTCGTGTACGTCCTGG--CA............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCCGGCGAGCACTGGTTCCAGGG......................2711.001001000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGCTCATTCGTGTACGTCCTGA--CATC-----------GAACA-----------------AAACATCTAACAC-------AT----TCAGG-----AA-AC----------------------TCACCATACACATTC------A--------CA-------AAACCACACACACACACAAACAAATAAAAACCGTCCTAGTCAAACAAA---TTG-----AGATC--TAG---A---------G---------------------------------------------AT------C-------TCAAT-----------TCCTCAATCGTTTGCCAATCGTTTTACATATATAT----TGTATTATAGTCGCACCCGGCGAACATTGGTTCCAAGGCAAACTGGAGTTTATGCTTAGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------TCCTCAATCGTTTGCC...................................................................................1811.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATCGTTTGCCAATCGTT............................................................................2111.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGTTCCAAGGCAAACT................2011.00100010
..................................................................................................................................................................................ATTCGTGTACGTCCTGA--CATC-----------...............................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCTCATTTGTGAATGTCCAGC--CATC-----------A------------------------AACATAACCT---------------------------------------------------------------AC------A--------CTCAT-ACACATCTAGACACACACACAAGCACACACA---CCCAC-------ACATGTACATG-------------------------------------------------------------------------------------------------------CGCTCAATCCTGCC-----------AATCT-T--GTG-----TATATTGTAGTCGCACCCGGCGAACACTGGTTTCAAGGCAAGCTCGAGTTTATGCTGAGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----TATATTGTAGTCGCACCCG.........................................2113.003210000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CATGTACATG-------------------------------------------------------------------------------------------------------CGCTCAATCCT...........................................................................................2112.002000000000000000000000000000000100000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................ATGTACATG-------------------------------------------------------------------------------------------------------CGCTCAATCCTG..........................................................................................2112.002001000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC-----------AATCT-T--GTG-----TATATTGTCA..................................................2311.001000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTCAAGGCAAGCTCGAGTTTA........2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTTCAAGGCAAGCT................1911.001000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----TATATTGTAGTCGCACCCGG........................................2111.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGGCGAACACTGGTTTCAAGGCAAGCTCGAGTT..........3711.001000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATGTACATG-------------------------------------------------------------------------------------------------------CGCTCAATC.............................................................................................1811.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................TACATG-------------------------------------------------------------------------------------------------------CGCTCAATCCTGT.........................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CATG-------------------------------------------------------------------------------------------------------CGCTCAATCCTGCC-----------AAT..........................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CACACACACAAGCAC............................................................................................................................................................................................................................................15200.051000000000000000000000000000000000000000000000000000010000000000
droMoj3
ATC------------------GTGCCTTAAGATAGCT---------TTA---------------------------------AG----CAATCAGGTAAGTCCTAACTCATGGTA---ATTGCATGAGAC--------------TT----------------TAATAA--TGGGGCTCATTTGTGAATGTCCAGT--CATCAATCAGTCATCC------------------------AA--TCACAC---------------------------------------------------------------ACACTCAC---------------ACCCACCCACACACACACACACACACAGAGACAACGCAC-------ACACACATATA-------------------------------------------------------------------------------------------------------CTTTCAATGCTGGC-----------TATCT-T--GTG-----TATATTGTAGTCGCACCTGGCGAGCATTGGTTCCAAGGCAAGCTCGAGTTCATGCTGAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGCAAGCTCGAGT...........1811.001001000
............................................................................................................................................................................................................................................................................................................................................................CACACACACACAGAGACAACGCAC-------A.......................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................................................................................................................................................CACACAGAGACAACGCAC-------........................................................................................................................................................................................................................1811.001000010
droGri2
ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGGGCTCATTTGTGAATGTCCG-A--AATC----CGTCATCA------------------------AACAT--CTT---------------------------------------------------------------ATACTCAC---------------ACAC------------ACACCAG-ACACACA---CTCAC-------ACACACACATA-------------------------------------------------------------------------------------------------------CGCTGAATTGTTGC----CAA----AATCT-TGTGTAT----TATTTTATAGTCGCACCCGGCGAACACTGGTTTCAAGGCAAGCTCGAGTTTATGCTGAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................G-ACACACA---CTCAC-------ACACACAC................................................................................................................................................................................................................21200.05110

Generated: 05/18/2015 at 02:51 PM