ID:

dsi_3312

 Coordinate:

2r:19475086-19475235 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.8

Flybase annnotation

five_prime_UTR [2r_19475032_19475509_+]; exon [2r_19475032_19475624_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
ATTGAATTTATTTGCAAACAAAAATCGAAACACGGGAGCCCGACGTTAGCGTAAGTGTTACGGCCATCGATTCAGCTCAGCTGCTGGCCAATTAAAATATCATCGATGTTGCACACAGATACGCCGCACACACCCTCACGCACACACGCACCGCCTGGGAACAAGGTTCGAGCCCAGAATCTCAATTTGATCAATTTAGCATTCTGGCCATTTGACAATACAAATTGAGACTCGTCTGCACTGGGTACAA
**************************************************************((((((((((((((......)))))..............)))))))..))......************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................AGGTTCGAGCCCTGTATC..................................................................... 18 2 1 15.00 15 0 9 4 2 0 0 0 0 0 0 0
...................................................................................................................................................TGACCGCCTGGGAACA....................................................................................... 16 2 20 5.00 100 100 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GACCGCCTGGGAACA....................................................................................... 15 1 5 4.40 22 20 0 0 0 0 0 0 2 0 0 0
........................................................................................................................................................................................ATTTGATCAATTTAGCATTCTGGCC......................................... 25 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0
............TGCAAACAAAAATCGAAACACGGGA..................................................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAAATTGAGACTCGTCTGCA.......... 20 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................AGGTTCGAGCCCTGTATCCC................................................................... 20 3 2 1.50 3 0 2 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................ACCGCCTGGGAACAC...................................................................................... 15 1 6 1.17 7 7 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTTCGAGCCCTGTATCCC................................................................... 18 3 20 1.15 23 0 12 11 0 0 0 0 0 0 0 0
.....................................................................................................................................................ACCGCCTGGGAACACTCT................................................................................... 18 3 20 1.00 20 20 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GAACCTCAATTTGATCAATTTAGCATT............................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......TTATTTGCAAACAAAAATCGAAACA.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................TGCGGCCATCGATTCAGCTCAG.......................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................CGTCGATTCAGCTCGGCTGCT..................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................TCGAAACACGGGAGCCCGACGTTAGC........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
............................AACACGGGAGCCCGACGTT........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................AAATTGAGACTCGTCTGCACT........ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAATTGAGACTCGTCTGCA.......... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TCAATTTAGCATTCTGGTCATT...................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................AACACGGGAGCCCGACGT............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................CAATTTAGCATTCTGGCCAT....................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............TGCAAACAAAAATCGAAACACGGG...................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................GATCAATTTAGCATTCTGGCCATTT..................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................GCCCGACGTTAGCGT...................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................GCCATCGATTCAGCTCAGCTG....................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................CATCGATTCAGCTCGGCTGCT..................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................ATCATCGATGTTGCACACAG.................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............AAACAAAAATCGAAACACGGGA..................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGCACACACCCTCACGCACAC......................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................GGTTCGAGCCCTGTATCCC................................................................... 19 3 8 0.63 5 0 5 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGACACAGATACGACTCAC......................................................................................................................... 20 3 9 0.56 5 1 0 0 0 0 0 0 0 3 1 0
.......................ATCGAAACACGGGAGCCCTTT.............................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................ACACAGATACGCCGCACACAC..................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTACCGCCTGGGAACA....................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................GAAGTCGAAACAAGGGAGCC.................................................................................................................................................................................................................. 20 3 10 0.30 3 0 1 2 0 0 0 0 0 0 0 0
.............................................................................................................TGGACACAGATACGACTCACA........................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................TAGGTTCGAGCCCTGTATC..................................................................... 19 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTTCGAACCCAGTATCGC................................................................... 19 3 11 0.18 2 0 0 0 0 0 0 0 2 0 0 0
......................................................................................................................................................CCGCCTGGGAACACG..................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTGATCGATTTAGCATTT.............................................. 19 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................AGGTTCGAGCCCTGTATCC.................................................................... 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.................................................CGTAAGTGTGACGGC.......................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..........................GAAACACGGAAACCCGACGC............................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TTAGCAGTCTGGCCTTTTGG................................... 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................GGTTCGAGCCCTGATCCT.................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTTCGATCCCAGTATC..................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................GTTCGAGCCCTGTATCAC................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AGACCGCCTGGGAACA....................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAACCACCGCTTGGGAAC........................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAACTTAAATAAACGTTTGTTTTTAGCTTTGTGCCCTCGGGCTGCAATCGCATTCACAATGCCGGTAGCTAAGTCGAGTCGACGACCGGTTAATTTTATAGTAGCTACAACGTGTGTCTATGCGGCGTGTGTGGGAGTGCGTGTGTGCGTGGCGGACCCTTGTTCCAAGCTCGGGTCTTAGAGTTAAACTAGTTAAATCGTAAGACCGGTAAACTGTTATGTTTAACTCTGAGCAGACGTGACCCATGTT
************************************************************************************************************************************((((((((((((((......)))))..............)))))))..))......************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
..............................................................................................................................................................................................................CGGTAAACTGTTATGTTT.......................... 18 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................TCCAAGCTCGGGTCTTAGAG................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................TCCGAGCTCGGGTCTTAGAGT.................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.............CGTTTGTTTTTAGCTTTGTGCC....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................AGCTCGGGTCTTAGAGTTA................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0
..............................GTGCCCTCGGGCTGCAAT.......................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................CTAAGTCGAGTCGACGACC................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................TCCAAGCTCGGGTCTTAGAGT.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................TTCCAAGCTCGGGTCTTAGAG................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
......................................................CAGAATGCCGGTAGCTAA.................................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................ATGTTGAACTCTGAGCAG.............. 18 1 4 0.25 1 0 0 0 1 0 0 0
.................................................GCAGTCACAATGCCGGC........................................................................................................................................................................................ 17 2 4 0.25 1 0 0 0 0 0 1 0
........................................................................GCCGAGTCGACGACCGGT................................................................................................................................................................ 18 1 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................TGGCGGACCCTTGCT...................................................................................... 15 1 4 0.25 1 0 0 0 0 1 0 0
.......................................................................................................................................................................AGCTTGGGTCTTAGA.................................................................... 15 1 5 0.20 1 0 0 0 1 0 0 0
.................................................................................................................GCGTCTCTGCGGCGTGTGAG..................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0
.......................................................................................................................................................................AGCTGGGGCCTTGGAGTTA................................................................ 19 3 8 0.13 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................TGAGCAGAAGTGACC...... 15 1 8 0.13 1 0 0 0 0 1 0 0
.....................................................................................................................................GGAGAGCCTGTGTGCCTGG.................................................................................................. 19 3 12 0.08 1 0 0 0 0 1 0 0
.....................................................................................................................................GGAGTGCGTGTGTGAGT.................................................................................................... 17 1 12 0.08 1 0 0 0 0 0 1 0
........ATAAACGTTTGTTTT................................................................................................................................................................................................................................... 15 0 13 0.08 1 0 0 0 0 1 0 0
......................TTAGCGTAGTGCCATCGGG................................................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................ATGAGCAGAAGTGACC...... 16 2 20 0.05 1 0 0 0 0 0 1 0
.................................................................................................ATAGTAGCTAAAACGTGACT..................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19475036-19475285 + dsi_3312 ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCCCGAC-GTTAGCGTAAGTGTT----ACGGCCATCGATTCAGCTCA----GCTGCT-GG-----------CCAATTAAAATATCATCGATGTTGC--ACA-CAGATACGC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGCCT--GGGAACAA-GGTTC------G-------AGCCCAGAATC----------------TCA---------ATTTGATCAATTTAGCATT--------CTGGCCATTTGACAATA-CAAATTGAGACTCGTCTGC--------------------ACTGGGTACAA
droSec2 scaffold_9:2246105-2246349 + ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCCCGAC-GTTAGCGTAAGTGTT----ACGGCCATCGATTCAGCTGC---------T-GG-----------CCAATTAAAATATCATCGATGGTGC--ACA-CAGATACGC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGCCT--GGGAACAA-GATTC------G-------AGCCCAGAATC----------------TCA---------ATTTGATCAATTTAGCATT--------CTGGCCATTTGACAATA-CAAATTGAGACTCGTCTGC--------------------ACTGGGTACAA
dm3 chr2R:18954781-18955025 + ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCTCGAC-GTTAGCGTAAGTGTT----ACGGCCACCGATTCAGCTGC---------T-GG-----------CCAATTAAAATATCATCGATGTTGC--ACA-CAGATACGC--CGC------------ACAGA----CACTCAC--------------------------GCACACACGCACCGCCT--GGGAGCAA-GATTC------G-------AGCCCAGAATC----------------TCA---------ATTTGATCAATTTAGCATT--------CTGGCCATTTGACAATA-CAAATTGAGACTCGTCTGC--------------------ACTGGGTACAA
droEre2 scaffold_4845:20318066-20318317 + ATCGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCCCAAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTCGGCTAC---------T-GG-----------CCAATTGAAATCTCATTGAGACTGC--ACA-CAGATACCC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGCCC--GAGAGCAG-AATTC------C-------GGCCCAGAATC----------------TCA---------ATTT-ATCAATTTAGCAACTTAGCAACTTAGCAATTCGACAATA-CAAATTGAGACTAGTCTGC--------------------ACTGGGTACAA
droYak3 2R:18916935-18917179 + ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTCGGCTGC---------T-AG-----------CCAATTGAAATCTCATCGATATTGC--ACA-CAGATGCCC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGTCC--GAGAGCAG-AATTC------G-------AGACCAGAATC----------------TCA---------ATTT-ATCAATTTAGCAAC--------TTAGCAGATTGACAATA-CAAATTGAGACTCGTCTGCACT-------------------TGGGTACAA
droEug1 scf7180000409672:6958662-6958892 + ATTGAAA-TT-------------ATTTA-GCAAACAAAAATCGA------AACACGG-GAGCACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTAAGTTCG---------T-TA-----------CCAATTAAAAAATCATAAATA-------CA-CAGATTCAA--CAC------------ACACA----CACA------------------CACTGTCTCACAGACATTCGCACAGCCA--AGGGAGAG-AATTA------G-------A-AGCAGAATC----------------TCA---------ATTT-ATCAATTTA------------------------ACAATA-CAAATTGAGACTCGTCTGC--------------------AGTGGGTACAA
droBia1 scf7180000301754:4254592-4254825 + ATCGAAA-TT-------------GTT-----AAACAAAAATCGAGACTCAAACACGG-CAGCTCGAC-GTCAGCGTAAGTGCA----GCGGCGATCGATTCAGCTCGTCACGCCACC-CA-----------CCACTTGGGGAGTCCTCGGTG-------CA-CAGATACAC-----------------------------CCGC--------------------------GCCCACACGCACAGCCC--GGGCAGGG-AACTC------G-------GAGCCGGAATC----------------TCA---------ATTT-ATCAATTTG------------------------GCAATT-CGAACTGAGACTCGTCTGCACTCGTC----------TGCAGTGGGTACAA
droTak1 scf7180000415672:125338-125582 + ATTGAAA-AT-------------ATT-----AAACAAAAATCGA------AACTCGG-GAGCACGAC-GTTAGCGTAAGTGCA----GCGGCAATCGATTTAGTTCGTTACG-------TTCACCGTTTA-CCAATTGAACAGTCATCAATAT-AC--ACA-CAGATTCGCCCCCCGCTTACCCA----------------------------------CACTGCTGC--ACACACACGCACAGCCC--GGGGAGGAAATTTA------G-------A-GCCAGAATC----------------TCA---------ATTT-ATCAATTTG------------------------ACAATA-CAATTTGTGGCTCGTCTGC--------------------AGTGGGTACAA
droEle1 scf7180000490976:65504-65751 + ATTGAAA-TT-------------ATTTA-GCAAACA--AATCGA------AACTCGG-GAGTACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTTAGTTCG---------T-TA-----------CCAATTAAAAAATCATCAATAT-CC--ACA-CAGACACACCCCGCACTCACGCACACACACA----C----ACA--------------CACACACCCGCAGTCACACGCACAGGCA--AGGGAGACAAATTA------G-------A-ACCTGAATC----------------TCA---------ATTT-ATCAATTTA------------------------ATAATA-AAAATTGAGACTCGTCTGC--------------------AGTGGGTACAA
droRho1 scf7180000772108:654-896 - ATTGAAA-TT-------------ATTTA-GCAAACA--AATCGA------AACACGG-GAGCACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTTAGTTTG---------T-TA-----------CCAATTGAAAAGTCATCAACAT-CC--ACA-CAG-CACACCCCGCAATTACCGACTCACACA----CCCACA--------------------GCCGC--ACTCACACGCACAGGCA--AAGGAGACAAATTA------G-------A-ACCTGAATC----------------TCA---------ATTT-ATCAATTTA------------------------ATAATA-AAAATTGAGACTCGTCTGC--------------------AGTGGGTACAA
droFic1 scf7180000454066:2976995-2977237 + ATTGAAACT----------------TA--GCAAACA--AATCGAAA--TAAACACG--GAGTGCGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTTAGTTGC---------T-TA-----------CCAATTGGAAACTCATCAATAT-GCACAGA-CACACACAGCCAACAGTCACACA----------------------------------AAA-GCCCA--GCACACACGCACAGTCA--AGAAAGCCAAATTA------G-------A-ACCAGAAT---------------TCTCA---------ATTT-ATCAATTTA------------------------ATAATAAAAAATTGAGACTCGTCTGCGTC--------------TGCAGTGGGTACAA
droKik1 scf7180000302270:8641-8882 - ATCCCAT-TT-------------ATTT--TCAAAAA--AATC-A------AACACTG-GAGCACGAC-GTTAGCGTAAGTGGTCCCCACCGCGATCGATCCAATTCG---------GGTA-----------CCAATTAAACTATCATCAATAC-CC--ACA-CACA--CGC--CAT------------ACACA----CCC--ACACACACCCCTGCCCAGT----CGC--CCATGCACGCACAAGCC--CAAGAC-------A------G-------AGACACGAATCTCGG---TA-------CGA---------ATTT-ATCAATTTA---------------------------ATA-AAAATTGAGACTCGTCTGC--------------------AGCGGGTACAA
droAna3 scaffold_13266:15284468-15284713 + ATTGAAT-TT-------------ATTTTTCCAAACA--AAG-TA------AACACGG-GAGCACGTC-GCCAGCGTAAGTTGC-----CCGCGATCGATTGTGTTCG---------T-GTCCAGCCCCAAGC-------CCTATCATCAATAT-CC--GCACCATATACCTCCTCCCGACACCCA----------------------------------AGCAACCCC--GCACACACGCACTCTGC--A-------------------A-------AGAAACGAATCTGAGCAGTCCGGAGGCACA-----AA--ATTT-ATCAATTTA---------------------------ACT-CAAATTGAGACTCGTCTGCATC---------------GCAGCGGGTGCAA
droBip1 scf7180000396547:1763274-1763519 - ATTGAAT-TT-------------ATTTTTCCAAACA--AAG-TA------AACACGG-GAGCACGTC-GCCAGCGTAAGTTGC-----CCGCGATCGATTGTGTCCG---------T-GTCCAGCCCCAAGC-------CCAATCATCAATAT-CC--GCACCACATACCTCCACCCGAAACCC------A----------------------------GACTTCCCC--GCACACACGCACTTTGC--A-------------------A-------AGAAACGAATCTGAGCAGTCCGAAGACACA-----AA--ATTT-ATCAATTTA---------------------------ACT-CAAATTGAGACTCGTCTGCATC---------------GCAGCGGGTACAA
dp5 3:3346672-3346932 + ATTAAAT-AAATCTAAAAATTTTAGTT-----TA--A-AAG-TA------AAGACGGAGAGCTCGTCTGCAGGCGTAAGTGGC----ACCGCGATCGATTCTGGCTG---------T-TA-------------------ATGTTCATCAATTTTCC--AAA-CATGCAA---------------------ACG----CCC--ACAAAC--------------------GTTCTTAAGTGTACTTTCTCGAAGAGGAA-CGTTC------A-------AGACACGCATCTCGTCGTTGG----GCAC-AAACGAAATTTTT-ATCAATTTA-------------------------------TAAATTGAAACCCGTCTGCAGCCAGCCAGCCGCAAATGCGCAGGGTACAA
droPer2 scaffold_2:3539828-3540091 + ATTAAAT-AAATCTAAAAATTTTAGTT---TAAACA--GAG-TA------AACACGGAGAGCTCGTCTGCAGGCGTAAGTGGC----ACCGCGATCGATTCTGGCTG---------T-TA-------------------ATGTTCATCAATTTTCC--AAA-CATGCAA---------------------ACG----CCC--ACGAAC--------------------GTTCTTAAGTGTACTTTCTCGAAGAGGAA-CGTTC------A-------AGACACGCATCTCGTCGTTGG----GCAC-AAACGAAATTTTT-ATCAATTTA-------------------------------TAAATTGAAACCCGTCTGCAGCCAGCCAGCCGCAAATGCGCAGGGTACAA
droWil2 scf2_1100000004902:11384159-11384233 + TCAACTT-TC-------------AATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTT--------TCCATTGTTTGTCCATA-CAAATTGAGTGGCGTTAACCTG-------GA-----CGAAATGCATAGAA
droVir3 scaffold_12875:9046042-9046184 - C------------------------------------------------------------------------------------------------------------------------------------------------ATCTATCATTT--ACG-CATACGCGC---GC------------ACACACACACACACAC--------------------------GCACGCACACACCAATT--GCGTATAT-TGTACATGCAT----------ATATAAATA----------------TAT---------ATGT-ACCAATTTA---------------------------ATT-TAAATT-AAACTCGTCTGCATCCGACAG------------TCAGGTCCAA
droMoj3 scaffold_6496:18126980-18127136 + AGAGAG------------------------------------------------------------------------------------------------------------------------------------------CATCTATCATTC--GCA-CACACAT---------------------ACG----CACTCACACGCATACGTATCCAAG--------------------------------ATAT-CGTACAAGCATATATATATTAATATGAATATATAT-------AGACAGA----GAG--ATGT-ATCAATTTA---------------------------ATT-TAAATT-AAACTCGTCTGCATCCGACAG------------GCAGGTCCAA
droGri2 scaffold_15245:14031250-14031385 + GATCAAC-TG----------------------AACAATAATAAA------TG-----------------CTAGAGAAAGC-----------------------------------------------------------------------TACCC--ACA-CACACACTCGCCCCATTCACACA----------------------------------CAC-ATCAT--ACACACATACACAATAC-----------------------------------ACACAT----------------TCG---------GATT-GCCATTTAA------------------------ATAAAATAAAATAGTGTCTCGTCT---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCCCGAC-GTTAGCGTAAGTGTT----ACGGCCATCGATTCAGCTCA----GCTGCT-GG-----------CCAATTAAAATATCATCGATGTTGC--ACA-CAGATACGC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGCCT--GGGAACAA-GGTTC------G-------AGCCCAGAATC----------------TCA---------ATTTGATCAATTTAGCATT--------CTGGCCATTTGACAATA-CAAATTGAGACTCGTCTGC--------------------ACTGGGTACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................ATTTGATCAATTTAGCATT--------CTGGCC..............................................................2513.00321000000000000000
..........................T--GCAAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2512.00200010001000000000
.........................................................................................................................................................................................................................................................................................................................................................................CAAATTGAGACTCGTCTGC--------------------A..........2012.00200000000000002000
................................................................................................................................................................................................................................................ACCGCCT--GGGAACAC-.........................................................................................................................................................1561.17700000007000000000
........TT-------------ATTT--GCAAACAAAAATCGA------AACA.....................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
........................................TCGA------AACACGG-GAGCCCGAC-GTTAGC.................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
..................................................AACACGG-GAGCCCGAC-GTT....................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................AAATTGAGACTCGTCTGC--------------------ACT........2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AAATTGAGACTCGTCTGC--------------------A..........1911.00100010000000000000
..................................................AACACGG-GAGCCCGAC-GT.....................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
...................................................................................................................................................................................................................................................................................................................................CAATTTAGCATT--------CTGGCCAT............................................................2011.00110000000000000000
..........................T--GCAAACAAAAATCGA------AACACGG-G................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
................................................................................................................................................................................................................................................................................................................................GATCAATTTAGCATT--------CTGGCCATTT..........................................................2511.00101000000000000000
............................................................GCCCGAC-GTTAGCGT...............................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..........................................................................................GCCATCGATTCAGCTCA----GCTG........................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................ATCATCGATGTTGC--ACA-CAG......................................................................................................................................................................................................................................................2011.00100000100000000000
...............................AAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
.............................................................................................................................................................................CGC------------ACACA----CCCTCAC--------------------------GCACAC...............................................................................................................................................................................2111.00100000000000001000
.......................................ATCGA------AACACGG-GAGCCCTTT-.......................................................................................................................................................................................................................................................................................................................................................2120.50100000000000001000
..............................................................................................................................................................ACA-CAGATACGC--CGC------------ACACA----C.....................................................................................................................................................................................................................2120.50100000001000000000
droSec2
ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCCCGAC-GTTAGCGTAAGTGTT----ACGGCCATCGATTCAGCTGC---------T-GG-----------CCAATTAAAATATCATCGATGGTGC--ACA-CAGATACGC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGCCT--GGGAACAA-GATTC------G-------AGCCCAGAATC----------------TCA---------ATTTGATCAATTTAGCATT--------CTGGCCATTTGACAATA-CAAATTGAGACTCGTCTGC--------------------ACTGGGTACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................ATCGA------AACACGG-GAGCCCG..........................................................................................................................................................................................................................................................................................................................................................1912.0020011
..................................................AACACGG-GAGCCCGAC-GT.....................................................................................................................................................................................................................................................................................................................................................1812.0020020
..............................................................................................................................................................................................................................................................................................................................................................TTTGACAATA-CAAATTGAGACTCGTCTG................................2811.0011000
.........................................................................................GGCCATCGATTCAGCTGC---------T-.....................................................................................................................................................................................................................................................................................................1911.0010010
............................................................GCCCGAC-GTTAGCGTAAGTGTT----A...................................................................................................................................................................................................................................................................................................................................2311.0010001
.........................................................................................................................................................TGC--ACA-CAGATACGC--CGC------------A..............................................................................................................................................................................................................................1911.0011000
........................................................................................................................................................GTGC--ACA-CAGATACGC--CGC------------C..............................................................................................................................................................................................................................2011.0010010
.....................................................................................................................................................................ATACGC--CGC------------ACACA----CCCT..................................................................................................................................................................................................................1811.0010001
................................AACAAAAATCGA------AACACGG-G................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................................................................................................................................CGATGGTGC--ACA-CAGATACG.................................................................................................................................................................................................................................................2011.0011000
........................................................G-GAGCCCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................2311.0010001
........................TTT--GCAAACAAAAATCGA------AACACGG-.................................................................................................................................................................................................................................................................................................................................................................2511.0011000
.............................................................................................................................................................................................CACA----CCCTCAC--------------------------GCACACACGC...........................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................................................................................................................................ATTGAGACTCGTCTGC--------------------ACTGGGT....2311.0010001
.......................................................GG-GAGCCCGAC-GTTAGCGTAAGTGT.........................................................................................................................................................................................................................................................................................................................................2511.0010100
........................................................................................................................................TAAAATATCATCGATGGTG................................................................................................................................................................................................................................................................1911.0011000
..............................................................CCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCTCGAC-GTTAGCGTAAGTGTT----ACGGCCACCGATTCAGCTGC---------T-GG-----------CCAATTAAAATATCATCGATGTTGC--ACA-CAGATACGC--CGC------------ACAGA----CACTCAC--------------------------GCACACACGCACCGCCT--GGGAGCAA-GATTC------G-------AGCCCAGAATC----------------TCA---------ATTTGATCAATTTAGCATT--------CTGGCCATTTGACAATA-CAAATTGAGACTCGTCTGC--------------------ACTGGGTACAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................CATTTGACAATA-CAAATTGAGAC.......................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
.......................................................GG-GAGCTCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000012000000000020000010000000000000000
.............................................................CTCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001300000000100000000000000000000000000
..................................................AACACGG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000010000000000001000000000100000000000000000
..................................................AACACGG-GAGCTCGAC-GT.....................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000000110000000000000000000000000
...............................AAACAAAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000100000000010000000000001000
..........................................GA------AACACGG-GAGCTCGAC-G......................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100001000000001000000000000000000000000
.......................................ATCGA------AACACGG-GAGCTCG..........................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................AAACAAAAATCGA------AACACGG-G................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100010000000000000000000000000000000000000000000000010000000000000000000000
..........................................................GAGCTCGAC-GTTAGCGTAAG............................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000120000000000000000000000000
..................................................................C-GTTAGCGTAAGTGTT----ACGGC...............................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000010000000000000000001000000000000000000000
.........................................CGA------AACACGG-GAGCTCGA.........................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000001000000000000000000000000000000000000000000000000000000000000001000
...................................AAAAATCGA------AACACGG-GAG..............................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000100000000000000000
.........................................CGA------AACACGG-GAGCTCGAC-GT.....................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000
.........................................CGA------AACACGG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000
..........................................GA------AACACGG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
.......................................................GG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
......................................................CGG-GAGCTCGAC-GTTAGC.................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GA------AACACGG-GAGCTCGAC-.......................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000
....................................AAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................AGCTCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000
...................................................ACACGG-GAGCTCGAC-GTT....................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................ACACGG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000
..................................................AACACGG-GAGCTCGAC-GTT....................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000
......................................................................TAGCGTAAGTGTT----ACGGC...............................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010
.............................................................................AGTGTT----ACGGCCACCGAT........................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CGC------------ACAGA----CACTCAC--------------------------GCACAC...............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................................ACGG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
......................................AATCGA------AACACGG-GAGCTCGAC-.......................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
....................................AAAATCGA------AACACGG-GAG..............................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGACAATA-CAAATTGAGACT......................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGAGACTCGTCTGC--------------------ACTGGG.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000
..................................CAAAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AACACGG-GAGCTCGAC-GTTAG..................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000
..............................................................TCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.................................ACAAAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000
..........................................................GAGCTCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CGATGTTGC--ACA-CAGATA...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................ACGG-GAGCTCGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................A------AACACGG-GAGCTCGAC-GTTAGCGT...............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................CACCGATTCAGCTGC---------T-GG-----------C.......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AGA----CACTCAC--------------------------GCACACACGCACC........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TA-CAAATTGAGACTCGTCTGC--------------------ACT........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GAC-GTTAGCGTAAGTGTT----ACGGC...............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................ACAAAAATCGA------AACACGG-GAG..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AACACGG-GAGCTCGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AACACGG-GAGCTCGAC-GTTAGCGTAAG............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................TCAC--------------------------GCACACACGCACCGCCT--GC................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
...................................AAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TA-CAAATTGAGACTCGTCT.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................C-GTTAGCGTAAGTGTT----ACGGCC..............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AATCGA------AACACGG-GAGCTCG..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................CGATTCAGCTGC---------T-GG-----------CCAAT...................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATCGA------AACACGG-GAGCTCGAC-GTTAGC.................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATCGA------AACACGG-GAGCTCGAC-GTT....................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GG-GAGCTCGAC-GTTAGCA................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATCGA------AACACGG-GAGCTC...........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CACACACGCACCGCCT--GGGAGC............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGACAATA-CAAATTGAGACTCGTCTGC--------------------...........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AGCTGC---------T-GG-----------CCAATTAAAATA............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................ATTGAGACTCGTCTGC--------------------ACTG.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CT--GGGAGCAA-GATTC------G-------AT....................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGA------AACACGG-GAGCTCGAC-G......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................T--GCAAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................A------AACACGG-GAGCTCGAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................CGA------AACACGG-GAGCTCGAC-.......................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
....................................................CACGG-GAGCTCGAC-GTTAGCAGT..............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AAAATCGA------AACACGG-GAGCTCG..........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ACCGCCT--GGGAGCAA-GATTC------G-------AG....................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTGATCAATTTAGCATT--------CTGG................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................TCGATGTTGC--ACA-CAGATACGC--..............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................T----ACGGCCACCGATTCAGCTGC---------T-.....................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GCACCGCCT--GGGAGCAA-GATTC------G-------AG....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................GG-GAGCTCGAC-GTTAGCGTAAGTGG.........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................AAACAAAAATCGA------AACACGG-GAGCT............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CAC--------------------------GCACACACGCACCGCCT--GGGA..............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................AC-GTTAGCGTAAGTGTT----ACG.................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AATA-CAAATTGAGACTCGTCT.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................G-------AGCCCAGAATC----------------TCA---------ATTTGATC.......................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CAAATTGAGACTCGTCTGC--------------------ACTGGG.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................A------AACACGG-GAGCTCGAC-GTTA...................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TT--GCAAACAAAAATCGA------AACACGG-G................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................CGAC-GTTAGCGTAAGTGT.........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................C------------ACAGA----CACTCAC--------------------------GCACACACGC...........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................G-GAGCTCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................ACGG-GAGCTCGAC-GTTAGAAG...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................ACGG-GAGCTCGAC-GTTAGCGT...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................ATCGA------AACACGG-GAGCTCGA.........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................CACGG-GAGCTCGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................TCGA------AACACGG-GAGCTCGAC-GTTAGC.................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ACCGCCT--GGGAGCAA-GAT......................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CGG-GAGCTCGAC-GTTAGCGTAAGTG..........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ACACGG-GAGCTCGAC-GTTAGCGT...............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AGACTCGTCTGC--------------------ACTGGGTA...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ACACGG-GAGCTCGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.....................................AAATCGA------AACACGG-GAGCTCGAC-.......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCCACCGATTCAGCTGC---------T-.....................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
..............................CAAACAAAAATCGA------AACACGG-GAGCT............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................ATACGC--CGC------------ACAGA----CACTCAC--------------------------G....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAACAAAAATCGA------AACACGG-GAG..............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GA------AACACGG-GAGCTCGAC-GT.....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................ATCGA------AACACGG-GAGCTCGAC-G......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................AAAATCGA------AACACGG-GAGCTCGAC-.......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................ACCGATTCAGCTGC---------T-GG-----------C.......................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................GA------AACACGG-GAGCTCGAC-GTTAG..................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAAAATCGA------AACACGG-GAGCTC...........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
................................................................GAC-GTTAGCGTAAGTGTT----AC..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................CAAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................AATC----------------TCA---------ATTTGATCAATTTAG................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CGGCCACCGATTCAGCTGC---------T-G....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ACACGG-GAGCTCGAC-GTTAG..................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GAGACTCGTCTGC--------------------ACTGGG.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................AGCGTAAGTGTT----ACGGCC..............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ACACGG-GAGCTCGAC-GTATC..................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AAATCGA------AACACGG-GAGCATC..........................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AACAAAAATCGA------AACACGG-AT...............................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATCGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCCCAAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTCGGCTAC---------T-GG-----------CCAATTGAAATCTCATTGAGACTGC--ACA-CAGATACCC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGCCC--GAGAGCAG-AATTC------C-------GGCCCAGAATC----------------TCA---------ATTT-ATCAATTTAGCAACTTAGCAACTTAGCAATTCGACAATA-CAAATTGAGACTAGTCTGC--------------------ACTGGGTACAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................GG-GAGCCCAAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................1812.0020000020
...............................AAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2212.0020000110
............................................................GCCCAAC-GTTAGCGTAAGTGT.........................................................................................................................................................................................................................................................................................................................................2111.0010000010
...................................................ACACGG-GAGCCCAAC-GTTAGCG................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..................................................AACACGG-GAGCCCAAC-GT.....................................................................................................................................................................................................................................................................................................................................................1811.0010000010
................................AACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2111.0010000100
........................................TCGA------AACACGG-GAGCCCAAC-.......................................................................................................................................................................................................................................................................................................................................................2011.0010000100
droYak3
ATTGAAT-TT-------------ATTT--GCAAACAAAAATCGA------AACACGG-GAGCACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTCGGCTGC---------T-AG-----------CCAATTGAAATCTCATCGATATTGC--ACA-CAGATGCCC--CGC------------ACACA----CCCTCAC--------------------------GCACACACGCACCGTCC--GAGAGCAG-AATTC------G-------AGACCAGAATC----------------TCA---------ATTT-ATCAATTTAGCAAC--------TTAGCAGATTGACAATA-CAAATTGAGACTCGTCTGCACT-------------------TGGGTACAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................AACAAAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...............................................................CGAC-GTTAGCGTAAGTGTT----ACGGC...............................................................................................................................................................................................................................................................................................................................2411.00100100000000
..................................................AACACGG-GAGCACGAC-GTT....................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
.....................................................................TTAGCGTAAGTGTT----ACGGC...............................................................................................................................................................................................................................................................................................................................1911.00100100000000
.............................................................................AGTGTT----ACGGCGATCGAT........................................................................................................................................................................................................................................................................................................................1811.00100010000000
.......................ATTT--GCAAACAAAAATCGA------AACACGG-G................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................AAAAATCGA------AACACGG-GAGC.............................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................GTT----ACGGCGATCGATTCGGCTGC---------T-.....................................................................................................................................................................................................................................................................................................2411.00100000100000
..........................T--GCAAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................................GCAG-AATTC------G-------AGACCAGAATC----------------...........................................................................................................2111.00110000000000
.......................................ATCGA------AACACGG-GAGCACGAC-.......................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................AAACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................GCAG-AATTC------G-------AGACCAGAATC----------------T..........................................................................................................2211.00101000000000
................................AACAAAAATCGA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................GGCGATCGATTCGGCTGC---------T-AG-----------CCAAT...................................................................................................................................................................................................................................................................................2611.00110000000000
..................................................AACACGG-GAGCACGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.........................................CGA------AACACGG-GAGCACGA.........................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
......................................AATCGA------AACACGG-GAGCAC...........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................TCGA------AACACGG-GAGCACGAC-.......................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................ATCGA------AACACGG-GAGCACGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.................................ACAAAAATCGA------AACACGG-GAGCAC...........................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................ACACGG-GAGCACGAC-GTTAGCT................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................ATTTAGCAAC--------TTAGCAGATT..........................................................2011.00101000000000
droEug1
ATTGAAA-TT-------------ATTTA-GCAAACAAAAATCGA------AACACGG-GAGCACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTAAGTTCG---------T-TA-----------CCAATTAAAAAATCATAAATA-------CA-CAGATTCAA--CAC------------ACACA----CACA------------------CACTGTCTCACAGACATTCGCACAGCCA--AGGGAGAG-AATTA------G-------A-AGCAGAATC----------------TCA---------ATTT-ATCAATTTA------------------------ACAATA-CAAATTGAGACTCGTCTGC--------------------AGTGGGTACAASizeHit CountTotal NormTotal
No Reads
droBia1
ATCGAAA-TT-------------GTT-----AAACAAAAATCGAGACTCAAACACGG-CAGCTCGAC-GTCAGCGTAAGTGCA----GCGGCGATCGATTCAGCTCGTCACGCCACC-CA-----------CCACTTGGGGAGTCCTCGGTG-------CA-CAGATACAC-----------------------------CCGC--------------------------GCCCACACGCACAGCCC--GGGCAGGG-AACTC------G-------GAGCCGGAATC----------------TCA---------ATTT-ATCAATTTG------------------------GCAATT-CGAACTGAGACTCGTCTGCACTCGTC----------TGCAGTGGGTACAASizeHit CountTotal NormTotal
No Reads
droTak1
ATTGAAA-AT-------------ATT-----AAACAAAAATCGA------AACTCGG-GAGCACGAC-GTTAGCGTAAGTGCA----GCGGCAATCGATTTAGTTCGTTACG-------TTCACCGTTTA-CCAATTGAACAGTCATCAATAT-AC--ACA-CAGATTCGCCCCCCGCTTACCCA----------------------------------CACTGCTGC--ACACACACGCACAGCCC--GGGGAGGAAATTTA------G-------A-GCCAGAATC----------------TCA---------ATTT-ATCAATTTG------------------------ACAATA-CAATTTGTGGCTCGTCTGC--------------------AGTGGGTACAASizeHit CountTotal NormTotal
No Reads
droEle1
ATTGAAA-TT-------------ATTTA-GCAAACA--AATCGA------AACTCGG-GAGTACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTTAGTTCG---------T-TA-----------CCAATTAAAAAATCATCAATAT-CC--ACA-CAGACACACCCCGCACTCACGCACACACACA----C----ACA--------------CACACACCCGCAGTCACACGCACAGGCA--AGGGAGACAAATTA------G-------A-ACCTGAATC----------------TCA---------ATTT-ATCAATTTA------------------------ATAATA-AAAATTGAGACTCGTCTGC--------------------AGTGGGTACAASizeHit CountTotal NormTotal
No Reads
droRho1
ATTGAAA-TT-------------ATTTA-GCAAACA--AATCGA------AACACGG-GAGCACGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTTAGTTTG---------T-TA-----------CCAATTGAAAAGTCATCAACAT-CC--ACA-CAG-CACACCCCGCAATTACCGACTCACACA----CCCACA--------------------GCCGC--ACTCACACGCACAGGCA--AAGGAGACAAATTA------G-------A-ACCTGAATC----------------TCA---------ATTT-ATCAATTTA------------------------ATAATA-AAAATTGAGACTCGTCTGC--------------------AGTGGGTACAASizeHit CountTotal NormTotal
No Reads
droFic1
ATTGAAACT----------------TA--GCAAACA--AATCGAAA--TAAACACG--GAGTGCGAC-GTTAGCGTAAGTGTT----ACGGCGATCGATTTAGTTGC---------T-TA-----------CCAATTGGAAACTCATCAATAT-GCACAGA-CACACACAGCCAACAGTCACACA----------------------------------AAA-GCCCA--GCACACACGCACAGTCA--AGAAAGCCAAATTA------G-------A-ACCAGAAT---------------TCTCA---------ATTT-ATCAATTTA------------------------ATAATAAAAAATTGAGACTCGTCTGCGTC--------------TGCAGTGGGTACAASizeHit CountTotal NormTotal
No Reads
droKik1
ATCCCAT-TT-------------ATTT--TCAAAAA--AATC-A------AACACTG-GAGCACGAC-GTTAGCGTAAGTGGTCCCCACCGCGATCGATCCAATTCG---------GGTA-----------CCAATTAAACTATCATCAATAC-CC--ACA-CACA--CGC--CAT------------ACACA----CCC--ACACACACCCCTGCCCAGT----CGC--CCATGCACGCACAAGCC--CAAGAC-------A------G-------AGACACGAATCTCGG---TA-------CGA---------ATTT-ATCAATTTA---------------------------ATA-AAAATTGAGACTCGTCTGC--------------------AGCGGGTACAASizeHit CountTotal NormTotal
No Reads
droAna3
ATTGAAT-TT-------------ATTTTTCCAAACA--AAG-TA------AACACGG-GAGCACGTC-GCCAGCGTAAGTTGC-----CCGCGATCGATTGTGTTCG---------T-GTCCAGCCCCAAGC-------CCTATCATCAATAT-CC--GCACCATATACCTCCTCCCGACACCCA----------------------------------AGCAACCCC--GCACACACGCACTCTGC--A-------------------A-------AGAAACGAATCTGAGCAGTCCGGAGGCACA-----AA--ATTT-ATCAATTTA---------------------------ACT-CAAATTGAGACTCGTCTGCATC---------------GCAGCGGGTGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................GCCAGCGTAAGTTGC-----CCGCGATCGATTG......................................................................................................................................................................................................................................................................................................................2811.001100000
...................................A--AAG-TA------AACACGG-GAGCA............................................................................................................................................................................................................................................................................................................................................................1811.001000001
.......................................AG-TA------AACACGG-GAGCACGTC-GCCAG..................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................GAGCACGTC-GCCAGCGTA..............................................................................................................................................................................................................................................................................................................................................1811.001000001
..................................................AACACGG-GAGCACGTC-GCCAGC.................................................................................................................................................................................................................................................................................................................................................2211.001010000
............................................................................................................................................................................................................................................................................................AATCTGAGCAGTCCGGAGGCA..........................................................................................................2111.001000010
..................................................AACACGG-GAGCACGTC-GCCAG..................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................CAAACA--AAG-TA------AACACGG-GA...............................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........................................A------AACACGG-GAGCACGTC-GCCAGCAG...............................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................GCACCATATACCTCCTCCCGACACC....................................................................................................................................................................................................................................2511.001100000
droBip1
ATTGAAT-TT-------------ATTTTTCCAAACA--AAG-TA------AACACGG-GAGCACGTC-GCCAGCGTAAGTTGC-----CCGCGATCGATTGTGTCCG---------T-GTCCAGCCCCAAGC-------CCAATCATCAATAT-CC--GCACCACATACCTCCACCCGAAACCC------A----------------------------GACTTCCCC--GCACACACGCACTTTGC--A-------------------A-------AGAAACGAATCTGAGCAGTCCGAAGACACA-----AA--ATTT-ATCAATTTA---------------------------ACT-CAAATTGAGACTCGTCTGCATC---------------GCAGCGGGTACAASizeHit CountTotal NormTotal
No Reads
dp5
ATTAAAT-AAATCTAAAAATTTTAGTT-----TA--A-AAG-TA------AAGACGGAGAGCTCGTCTGCAGGCGTAAGTGGC----ACCGCGATCGATTCTGGCTG---------T-TA-------------------ATGTTCATCAATTTTCC--AAA-CATGCAA---------------------ACG----CCC--ACAAAC--------------------GTTCTTAAGTGTACTTTCTCGAAGAGGAA-CGTTC------A-------AGACACGCATCTCGTCGTTGG----GCAC-AAACGAAATTTTT-ATCAATTTA-------------------------------TAAATTGAAACCCGTCTGCAGCCAGCCAGCCGCAAATGCGCAGGGTACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................CACGCATCTCGTCGTTGG----GC...........................................................................................................2012.0020000002000
...........................................................................TAAGTGGC----ACCGCGATCGATTCTGGC..................................................................................................................................................................................................................................................................................................................2612.0020000000200
......................................................CGGAGAGCTCGTCTGCAGGCGTAAG............................................................................................................................................................................................................................................................................................................................................2511.0010000000100
........................................................................GCGTAAGTGGC----ACCGCGATCGATTCTG....................................................................................................................................................................................................................................................................................................................2711.0011000000000
....................................................GACGGAGAGCTCGTCTGCAGGC.................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
.......................................................................................................................................................................................................................................................................................ACACGCATCTCGTCGTTGG----.............................................................................................................1911.0010000010000
......................TAGTT-----TA--A-AAG-TA------AAGACGGAGAGC.............................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................CACGCATCTCGTCGTTGG----G............................................................................................................1911.0010100000000
................................................................................GGC----ACCGCGATCGATTCTGGCTG---------.......................................................................................................................................................................................................................................................................................................2311.0011000000000
..........................................................................................................................................................................................................................................AAGTGTACTTTCTCGAAGAGG............................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................GTCGTTGG----GCAC-AAACGA..................................................................................................1811.0010100000000
.........................................................AGAGCTCGTCTGCAGGCGT...............................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................CTCGTCTGCAGGCGTAAGTGGC----AC..................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.............................................................................................................................................................................................................................................TGTACTTTCTCGAAGAGGA...........................................................................................................................................................1911.0010100000000
................................................................GTCTGCAGGCGTAAGTGG.........................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...............................................................CGTCTGCAGGCGTAAGTGGC----ACCGC...............................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................................................................AGGCGTAAGTGGC----ACCGCGA.............................................................................................................................................................................................................................................................................................................................2011.0010000100000
.....................................................................CAGGCGTAAGTGGC----ACCGCGATC...........................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................GATTCTGGCTG---------T-TA-------------------ATGTA...........................................................................................................................................................................................................................................................................1920.5010100000000
droPer2
ATTAAAT-AAATCTAAAAATTTTAGTT---TAAACA--GAG-TA------AACACGGAGAGCTCGTCTGCAGGCGTAAGTGGC----ACCGCGATCGATTCTGGCTG---------T-TA-------------------ATGTTCATCAATTTTCC--AAA-CATGCAA---------------------ACG----CCC--ACGAAC--------------------GTTCTTAAGTGTACTTTCTCGAAGAGGAA-CGTTC------A-------AGACACGCATCTCGTCGTTGG----GCAC-AAACGAAATTTTT-ATCAATTTA-------------------------------TAAATTGAAACCCGTCTGCAGCCAGCCAGCCGCAAATGCGCAGGGTACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................A------AACACGGAGAGCTCGTCTGCAGGCT................................................................................................................................................................................................................................................................................................................................................2612.002000002
..............................................................................GTGGC----ACCGCGATCGATTCTGGC..................................................................................................................................................................................................................................................................................................................2312.002200000
...................................................................................................................................................................................................................................................................GTTC------A-------AGACACGCATCTCGTCGTTGG----.............................................................................................................2611.001010000
................................................................GTCTGCAGGCGTAAGTGG.........................................................................................................................................................................................................................................................................................................................................1811.001000001
......................................................CGGAGAGCTCGTCTGCAGGC.................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................GACACGCATCTCGTCGTTGG----GCAC-AAACG...................................................................................................2911.001100000
...................................................ACACGGAGAGCTCGTCTGCAGG..................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................AGGCGTAAGTGGC----ACCGCGATCG..........................................................................................................................................................................................................................................................................................................................2311.001000001
...........................................A------AACACGGAGAGCTCGTCTGCAG...................................................................................................................................................................................................................................................................................................................................................2311.001010000
.......................................................................................................................................................................................................................................................................................ACACGCATCTCGTCGTTGG----GCAC-........................................................................................................2311.001100000
.......................................AG-TA------AACACGGAGAGCTCGTC........................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................GTACTTTCTCGAAGAGGAA-C........................................................................................................................................................2011.001000001
..............................................................................................................................................................................................ACG----CCC--ACGAAC--------------------GTTCTT.................................................................................................................................................................................1811.001010000
droWil2
TCAACTT-TC-------------AATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTT--------TCCATTGTTTGTCCATA-CAAATTGAGTGGCGTTAACCTG-------GA-----CGAAATGCATAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
C------------------------------------------------------------------------------------------------------------------------------------------------ATCTATCATTT--ACG-CATACGCGC---GC------------ACACACACACACACAC--------------------------GCACGCACACACCAATT--GCGTATAT-TGTACATGCAT----------ATATAAATA----------------TAT---------ATGT-ACCAATTTA---------------------------ATT-TAAATT-AAACTCGTCTGCATCCGACAG------------TCAGGTCCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AGAGAG------------------------------------------------------------------------------------------------------------------------------------------CATCTATCATTC--GCA-CACACAT---------------------ACG----CACTCACACGCATACGTATCCAAG--------------------------------ATAT-CGTACAAGCATATATATATTAATATGAATATATAT-------AGACAGA----GAG--ATGT-ATCAATTTA---------------------------ATT-TAAATT-AAACTCGTCTGCATCCGACAG------------GCAGGTCCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................ATCTATCATTC--GCA-CACACAT---------------------AC...........................................................................................................................................................................................................................2311.001000010
droGri2
GATCAAC-TG----------------------AACAATAATAAA------TG-----------------CTAGAGAAAGC-----------------------------------------------------------------------TACCC--ACA-CACACACTCGCCCCATTCACACA----------------------------------CAC-ATCAT--ACACACATACACAATAC-----------------------------------ACACAT----------------TCG---------GATT-GCCATTTAA------------------------ATAAAATAAAATAGTGTCTCGTCT---------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:30 AM