ID:

dsi_3265

 Coordinate:

3l:8225922-8226009 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAATCCCTCAGAACAAGTCGCTGTGCCAGGCGCTGCTCGATGGCCATCGGTGAGGGATAGTAGTAGTACTAGAGCATAAAGTTCTTAAGTGTATTATAAGAGCGTATTCGTTACTGATCATTTTGTTTGACTTTCAGAGAGGGCTTCTACTTGTACCCAGATGGCCAAGCGTACAATCCGGATCTGT
**************************************************.((((((.(((((....)))))((((.....))))..(((((.((((....((((....))))..))))))))).......)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
..................................................................................................................................................................TGGCCAAGCGTACAATCCGGATCTGT 26 0 1 2.00 2 0 1 1 0 0
....................................................................................................................................................................GCCAAGCGTACAATCCGGATC... 21 0 1 2.00 2 2 0 0 0 0
...............................................................................................................TTACTGATCATTATGTTTGACTTA..................................................... 24 2 1 1.00 1 0 0 0 1 0
.............................................................................................................CGTCACTGATCATCGTGTTT........................................................... 20 3 3 0.33 1 0 0 0 0 1
........................................AGGGCCATCGCTCAGGGAT................................................................................................................................. 19 3 13 0.08 1 0 1 0 0 0
..........................................................GAGTTGTAGTACTAGA.................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TGTTAGGGAGTCTTGTTCAGCGACACGGTCCGCGACGAGCTACCGGTAGCCACTCCCTATCATCATCATGATCTCGTATTTCAAGAATTCACATAATATTCTCGCATAAGCAATGACTAGTAAAACAAACTGAAAGTCTCTCCCGAAGATGAACATGGGTCTACCGGTTCGCATGTTAGGCCTAGACA
**************************************************.((((((.(((((....)))))((((.....))))..(((((.((((....((((....))))..))))))))).......)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.......................................................................................................................................................................TTCGCATGTAAGGCC...... 15 1 1 8.00 8 6 0 0 0 1 1
..TTAGGGAGTCTTGTTCAGCGA..................................................................................................................................................................... 21 0 1 2.00 2 0 1 0 1 0 0
...............................................................................................................................AACTGTAAGTCTCTCCC............................................ 17 1 1 2.00 2 0 0 0 2 0 0
...........................................................................TTATTTCAAGAATTCACATAAT........................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0
...................................................................................................................................................................CCGGTTCGCATGTTAGGCCTA.... 21 0 1 2.00 2 0 2 0 0 0 0
.......................................................................................................................................................................TTCGCATGTTAGGCCTAGGCA 21 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................CTACCGGTTCGCATGTTAGGCC...... 22 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................GAAAGTCTCTCCTCAAAATGAA................................... 22 3 3 0.33 1 1 0 0 0 0 0
................................................................................................................AGAACTAGTAAAACAATCTGA....................................................... 21 3 5 0.20 1 0 0 0 0 0 1
....................................................................................................................................................ATGAACATAGGTCTA......................... 15 1 9 0.11 1 0 0 0 0 1 0
.......................................................................................................................................................................TTCGCATGTAAGGCCG..... 16 2 20 0.10 2 2 0 0 0 0 0
.............................................................................................................................................................GGTCTACCGGTTCGCACGGC........... 20 3 10 0.10 1 0 0 0 0 1 0
......GCAGTCTAATTCAGCGAC.................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0
.......................................................................................................AGATAAGCAATGACTA..................................................................... 16 2 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 10:45 AM