ID:

dsi_3260

 Coordinate:

3l:19875383-19875623 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.5 -37.5 -37.3

Flybase annnotation

exon [3l_19875624_19877026_-]; CDS [3l_19875624_19877026_-]; exon [3l_19875119_19875382_-]; CDS [3l_19875119_19875382_-]; intron [3l_19875383_19875623_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAAAAACTTACCTATCGGTCGAAGTTTCTATTCCAATTTCTGTGGCAGGATTGTTTTGTGAACTATATAGTTATAGTAATGACAGAAAAATACATAATATATAAATCTAGTTTCTTTGAATTCAAATTGTTGAATTTATCCAAAAAAACAATTTACAAAAAGCTTCGTATTTAATTTTATTTTGAAAGCTTAATTGTTTAATAATTATATCCTGTATATATTGATTTCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACG
**************************************************.......((..((.(((((((((....)))..)))))).))..))((((..(((((((((((..((((((..((((((....))))))....)))))).............................(((((((((....))))))))).......((((((((......((((((((...............)).)))))))))))))).........))))))).))))..))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 M023
head
 SRR902009
testis
.........................................................................................................................................................................................................................................................................................................GTGTGGTACTGAGCT............................. 15 0 1 5.00 5 2 2 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CTGTGTGGTACTGAGCT............................. 17 1 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GTACTGAGCTAGAGA........................ 15 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGAGAA....................... 18 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTAGAGAA....................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTGTGGTACTGAGCTA............................ 16 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTGTGGTACTGAGCTAGAGAA....................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GTGGTACTGAGCTAGAGAA....................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGA.......................... 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................GACGTGTGGTACTGAGC.............................. 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GTGGTATTGAGCTAGAGA........................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TGACGTGTGGTACTGAG............................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GGTACTGAGCTAGAGA........................ 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTGTGGTACTAAGCTAG........................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GTACTGAGCTAGAGAAA...................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTA............................ 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................AGACGTGTGGTACTGAGCTAGAGA........................ 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GGTGGTACTGAGCTAGAGAAAA..................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GGTGGTACTGAGCTAGAGAA....................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TCCATACTACAATACTCTTTACAATGG................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................AGACGTGTGGTACTGAGCTA............................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ACCTGTGTGGTACTGAGCTA............................ 20 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GGTACTGATCTAGAGA........................ 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................ACTGACGTGTGGTACTGAGCTAGA.......................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAACTGACGTGTGGTACTGAGCTA............................ 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GAGATATCTGGCTGTGTGTAC....... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATATATAAATCTAGTTTCTTTGAATTCAAAT......................................................................................................................................................... 31 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGTTACTGAGCTAGAGA........................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGTGTGGTACTGAGCTAGAGATATCT................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGAGA........................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CGGACGTGTGGTACTGAGCTAGAG......................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TGGTGGTACTGAGCTAGAGA........................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTACTGAGTTAGAG......................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGAATTTATCCAGAAAAGCGATT............................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................GGTGGTACTGAGCTAGAGA........................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GGTACTGAGCTAGAGAAA...................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TGGTGGTACTGAGCTAGAGAA....................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AACTGACGTGTGGTACTGAGCT............................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AACTGACGTGTGGTACTGAGCTA............................ 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GTACTGAGCTAGAGAA....................... 16 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CTGTGTGGTACTGAGCTTGCGA........................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TCATTTCATTTTGAAAGCTTATT...................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................ATGACCTGTGGTACTGAGCT............................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TACTGAGCTAGAGAA....................... 15 1 9 0.33 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTTGAGTTTCTCCAAAAAA..................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................CCTGTGTGGTACTGAGCT............................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ATGCCGGGTCGTACTGAT............................... 18 3 20 0.25 5 0 0 5 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTACTTAGCTAGAGAA....................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ATTTTGAAAGCTTATT...................................................................................... 16 1 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGTTACTGAGCTAGAGAAA...................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TAATACTATTTTGAAAGCTGA........................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................TGGTATTGAGCTAGA.......................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AATCTAGTTTCTTTGTCTT.............................................................................................................................................................. 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
................................CAATACTGGATACAATGGGT................................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
......................ATCCTTACTACAATACTATTT.......................................................................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................GAGAATGCCGTGTGG...................................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GCTAGGGATAACTGGC................ 16 2 16 0.13 2 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GTGTGGTACTAAGTTAG........................... 17 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TAATATTATTTTGAAAACTTATT...................................................................................... 23 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................TGAGCTAGAAATATC.................... 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GTACCGTGCTAGAGAT....................... 16 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGTGTGGTACTAGGCT............................. 16 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTATTGAGCTAGAGAAAA..................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CTAGCTATGTGTAGGATGA.. 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................ACTGAGCTAGAGAAA...................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TAGGGATAACTGGCTTTGT........... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................ATCTTATTTTGAAAGCTGAT....................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAACGACA...................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AATTTAGTTTCTTTGA................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ATGCCATGTCGTACTGAC............................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................GGCTGGATTGTTTTG.............................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................GTGGTACTAAGTTAGCG......................... 17 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GGTACTGAGCTAACGA........................ 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACCTACAAAGGTGAACGCTTTGAGGTATGATGTTATGAGAAATGTTACCCATTCACCCGAATTTTTGAATGGATAGCCAGCTTCAAAGATAAGGTTAAAGACACCGTCCTAACAAAACACTTGATATATCAATATCATTACTGTCTTTTTATGTATTATATATTTAGATCAAAGAAACTTAAGTTTAACAACTTAAATAGGTTTTTTTGTTAAATGTTTTTCGAAGCATAAATTAAAATAAAACTTTCGAATTAACAAATTATTAATATAGGACATATATAACTAAAGTCTTACGGCACACCATGACTCGATCTCTATAGACCGACACACATGCTACTGC
**************************************************.......((..((.(((((((((....)))..)))))).))..))((((..(((((((((((..((((((..((((((....))))))....)))))).............................(((((((((....))))))))).......((((((((......((((((((...............)).)))))))))))))).........))))))).))))..))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................................................................................................GTTCTTCTAAGCATAAATTAA........................................................................................................ 21 2 1 1.00 1 1 0 0
....................................................................AATTGATAGCCAGCT.................................................................................................................................................................................................................................................................. 15 1 7 0.14 1 1 0 0
..........................................................................................................................................................................................................................................AAAAATAAAACTTTGGAATT....................................................................................... 20 2 9 0.11 1 0 1 0
......................GAGGTCTGATGTTAAG............................................................................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 2 0
.....................................................................................................................................................................................................ATAGGTTTGTTTGTTA................................................................................................................................ 16 1 15 0.07 1 0 1 0
................CTCTTTGAGGTGTGATGGT.................................................................................................................................................................................................................................................................................................................. 19 3 16 0.06 1 1 0 0
..................................................................TCAATTGATAGCCAGC................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19875333-19875673 - dsi_3260 ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTA------------TCGGT--------------CGAAGTTT----------------------------------------------------------------------------------------------------------------------------------CT---ATTC----------CAATTTCTGTG-GC----AGGATTGTTTTGTGAACTATATAGTTAT---------AGTA-------------------------------------------------------------------------ATGACAGAAAAATA------CATAATATATAAATCTA--------GTTTCTTTGAATT-CAAATTGTTGAATTTAT-----CCAAAAAA----------ACAAT-TTA-CAAAAAGCTTCGT-----------AT-----------TTAA---------------------------------------------------TTTTATTTTGAAAG--------------------CTTA---------------------------ATTGTTTAATAATTATATCCTGTATATAT-----------------------------------------------------------------TGATTTCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACG
droSec2 scaffold_11:200783-201123 - ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTA------------TCGGT--------------CTATGTTT----------------------------------------------------------------------------------------------------------------------------------AT---ATTC----------CAATTTCTGTG-GC----AGGATTGTTTTGTGAACTATATAGGTAT---------AGTA-------------------------------------------------------------------------ATGACAGAAAAATA------CATAATATATAAATCTA--------GTTTCTTTGAATT-CAAATTATTGAATTTAT-----TCAATAGG----------ATAAT-TTA-CCAAAAGCTTCGT-----------AT-----------TTAA---------------------------------------------------TTTTATTCTGAAAG--------------------CTTA---------------------------ATTGTTTAATAATTATGTCCTGTATATGT-----------------------------------------------------------------TGATTTCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACG
dm3 chr3L:20292279-20292647 - ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTG------------TCGGT--------------CGAAGATT----------------------------------------------------------------------------------------------------------------------------------CT---ATTA----------AAATTTATGTG-GT----AGGATTGTTTTGTGAAGTATGTAGGTAT---------TATATTGTT-------TAAACTGCT----------------------------------------------------ATGATAGAAAAATATTTTTGAGTGATGGATAAATCTAGCGCTGGAGTTTTGTTGAATT-CAAATTGTTCAATTTAT-----CCAAGCAG----------GCAAT-TTA-CCAGAAGCTTCGT-----------AT-----------TCCA---------------------------------------------------TTTAATTCTAAAAG--------------------CTTA---------------------------ATTTTTTAATAATTACCTCCTGTATATGT-----------------------------------------------------------------TAATTTCAGAATGCCATGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACG
droEre2 scaffold_4784:20016508-20016855 - der_866 ATGGATGTTTCCACATGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTG------------TCGGA--------------AGAAGTTT----------------------------------------------------------------------------------------------------------------------------------CT---ATTA----------TAAT--------------AGGTTTATTTTGTCAAGCATGTAGTTATGCGCCACGATATATAGTT-------TAGACTGTT--GATGT---------------------------AAC--------------------AAAAAAAT-----TGAGTGACGTATAAA-----------------------TT-CAATTTGTTGTATTGATCTGGCCCAAACAG----------GCGAT-TCA-CCAGAAGCT-CGA-----------TT-----------CCGA---------------------------------------------------TATAATCCTAAAGT--------------------TTTA---------------------------ATTGTTTAATATTTTTCTTCTGTATACGT-----------------------------------------------------------------TGTTTTTAGAATGCCGTGTGGTACTGAGCTTGAGATATCTGGCTGTGTGTACGATGACG
droYak3 v2_chr3L_random_039:17502-17824 - ATGGATGTTTCCACTTGTGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGTTTAA---------------AAACTTACCTG------------TCGGA--------------AGAAGTTT----------------------------------------------------------------------------------------------------------------------------------CT---ATTA---------------TATGCG-AC----A---------------------------------CGAAA-----TG-------TAGACTGTTTTGATGT---------------------------AAC--------------------AAAAAAAT----TTGAGTGATAGAAAAATCAAGTAGTAGAGTTGTCTGGAATT-CAAGCTATTGCATTGAA------------------------------TA-CCAGAATCTTCTA-----------TT-----------CCGG---------------------------------------------------TACAATCCTAAAAG--------------------TTTA------------------A--------ATACTTTAATAATTATATCCTGTTTATGC-----------------------------------------------------------------TGTTTGCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACG
droEug1 scf7180000409711:5666685-5667004 + ATGGATGTTTCCACATGCGAAACTCCTTACTACAATACTCTTTACAATGGGTAAGTGGGATTAT----------------TACATACCTTATTAATCACGATTCAGGCAAAGCTTTGG---TGAAAAATATATTTGGGTTTATGATCAGGTAATAACCTTTGGTTGTT------------------AGTATACTTCGTTTTTTATACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGACACCA---------------------AAA-----------------------TTATATG--GTCACTGTGTTAATTT-CAAAAAA----------TC-----------------------------------------------------------------------------------------------------------ATAA----------------TTAAA--ATTA----AGGGTTTAATACTAGA--------TATTTTAATA-------------TATAT----------------------------------------------------------------TTATTTACAGAATGCCATGTGGCACTGAACTAGAGATATCCGGCTGTGTTTACGATGACG
droBia1 scf7180000302193:5750329-5750597 + ATGGACGTTTCCACATGCGAAACTCCCTATTACAATACTCTTTACAATGGGTAAGTGGGATTTTGCGACGTATGTCTGTCTACTTACCTA-------------CAAG-----------TATCATACATTTTTG-----------------------------TACGTT------------------TGTCCCTTTTGTTTAAAGAACTTGTGACCCCATTTGTAGAGAAAAGGATTGTGCTCATC---------------A---ATCT----------AGATTTGTTTA--------A--------------------------------GAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCCCTT-----------------------------------------------------------------ACTTTTACTTAACAGAATGCCTTGCGGAACTGAACTAGAGATAACCGGCTGTGTGTATGATGACG
droTak1 scf7180000415703:503137-503221 + TTAAATATATAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTA------------------------------------------------------------------------CATTTTTTCTTAACAGAATGCCCTGCGGAACTGAACTAGAGATATCCGGCTGTGTGTACGATGACG
droEle1 scf7180000491193:4631237-4631310 - ATGGACGTGTCAACATGCGAAACCCCCTACTACAATACTCTTTACAATGGGTAAGTGGCTATAA---------------AAACATACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777002:41991-42454 - ATGGACGTGTCCACTTGCGAAACCCCCTACTACAATACTCTTTACAATGGGTAAGTA------A---------------TAACTTACCTG------------T-GTA--------------AGAT--------------------------------------------------------------ACTTC-------------------------------------------------------------------CT---GTTA----------ATGTTAATCCA-AT----AGGATGTTATTGTTATT-----AGCTAA---------GGGA------------------------------------AACTTG-----GTGT----TTTAATAAGTTTTAAAAAGTCACAGGA---------------------AAA-----------------------TATTAAG--GTAACTGTAATACATA-CATA--CATATATATTTGCGCTTTTATGAAGTTGGCAAAATATAAGTTTGTATAAAAGTTTTTTTCGGTATAAAAAATATGTCCATTATATTTGGGATTTTTTTCATTTGAGATAATAAATTAACTCTGT-AG--------------------C-TG---------------------------ATTATTTAATA-------------AATCATAATGCATTTAATGTTTTTTTAAATATATAAATATAAATACATTATCATGGTCTGTTTCATGTTTGTCTTACAGAATGCCCTGTGGCACTGAACTGGAGATATCCGGCTGTGTGTATGATGACG
droFic1 scf7180000454113:2009077-2009473 + ATGGACGTTTCCACATGCGAAACTCCCTACTACAATACACTTTACAACGGGTGAGTAGGAATAT----------------AACATACCTG-------------CGAA--------------AGTAGATTTTTA-----------------------------TAGGTTGCAA--------------TGTTCC------------------------------------------------TTGTT---------------A---ATTT----------GGATTTGTGTGTGC----TA--------------------------------GAAAA-----TGTTTTTTATAAACTATATTAGTATAGATAGTAAACTTATTACTGTGAACTGAAT-------AATAAATAGTGACAGGA---------------------AAA-----------------------TG-TAAG--GTTTTATTGAGACTACCAAAGAAC----ATATTTGCAAT-TTCTGAAGAAGATACAA-----------AG-----------TGAA---------------------------------------------------T-----------TATTTAAAAACAAAATTATATTTTTG---ATTGGTTT---------GATCTTT---TTATATTAATTAT-----------------------------------------------------------------------CACATTTGATTTACAGAATGCCCTGTGGTACTGAATTGGAGATTTCTGGTTGTGTGTACGACGATG
droKik1 scf7180000302441:3040532-3040848 - ATGGACGTCTCCACGTGCGAGACACCCTACTACAACACGCTCTACAATGGGTAAGTGTG---------------------GACTTACCTT------------G------------------AGTAGGATTTTG-----------------------------TTGGTTTTACTTGTTTTGGGACTATTCTTC------------------------------------------------CTGCTTTTTTTAGAAATCTCTCATATTATGTTCGATTCTAATTTCTAAG-TCGACAAGGAATTTTTTTTGAAT--------------------------------------------------------------------------------------------------------------------------------------------------ATTTGATTT-AAAAGAGTTGA--------------------------------------------------------------------------------------------------------------------------------------CATTTAGAACA--------------------CCTAACC-ATGGATTAACACTTTGTATCCTT---TCCTAAT------------------------------------------------------------------------------ACCCTTCCTAATAAGAATGCCGTGCGGCACCGAACTGGAGATATCCGGCTGTGTCTATGACGATG
droAna3 scaffold_13337:6411519-6411577 - ATGGACGTCTCTACGTGTGAGACCCCCTACTACAACACTCTCTACAATGGGTGAGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396709:153379-153437 - ATGGACGTCTCTACTTGTGAGACTCCTTACTTTAACACTCTCTACAATGGGTAAGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:2149378-2149427 - ATGGACGTGTCCACCTGCGAGACACCCTACTACAACACTCTGTACAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:442775-442824 - ATGGACGTGTCCACCTGCGAGACACCCTACTACAACACTCTGTACAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:3052390-3052444 + ATGGATGTTTCTACATGTGAAACTCCCTACTATAATACGCTTTATAATGGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:13584801-13584899 + TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAGG-------------------------------------------------------------------------------T-----------------------------------TGCTGCATAATTATACTTTGCTTGAAAT--CTCTTTTAGGATGCCCTGCGGCAGCGAGCTGGAAATCTCGGGCTGTGTCTATGATGATG
droMoj3 scaffold_6680:13755138-13755192 - ATGGATGTGTCTACGTGCGAGACACCCTACTACAATACGCTATATAATGGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:19007539-19007617 + ACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATA-------------AATATTAAT-------------------------------------------------------------AACTTCTAGCATGCCCTGCGGCAGTGAGTTGGAAATATCTGGTTGTGTCTACGATGATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTA------------TCGGT--------------CGAAGTTT----------------------------------------------------------------------------------------------------------------------------------CT---ATTC----------CAATTTCTGTG-GC----AGGATTGTTTTGTGAACTATATAGTTAT---------AGTA-------------------------------------------------------------------------ATGACAGAAAAATA------CATAATATATAAATCTA--------GTTTCTTTGAATT-CAAATTGTTGAATTTAT-----CCAAAAAA----------ACAAT-TTA-CAAAAAGCTTCGT-----------AT-----------TTAA---------------------------------------------------TTTTATTTTGAAAG--------------------CTTA---------------------------ATTGTTTAATAATTATATCCTGTATATAT-----------------------------------------------------------------TGATTTCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTACTGAGCT.............................1515.00500000001220000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAGCTAGAGA........................1514.00400000000040000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGAGAA.......................1813.00300000000030000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTAGAGAA.......................2012.00200000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTACTGAGCTA............................1612.00200000000200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGTACTGAGCTAGAGAA.......................2112.00200000000200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACTGAGCTAGAGAA.......................1912.00200000000020000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGA..........................1512.00200000000020000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTGAGCTAGAGA........................1611.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTA............................1511.00100000001000000000
.......................TCCATACTACAATACTCTTTACAATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATCTGGCTGTGTGTAC.......2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAAATCTA--------GTTTCTTTGAATT-CAAAT...................................................................................................................................................................................................................................................................................................................................................................3111.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTGGTACTGAGCTAGAGATATCT...................2611.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGAGA........................1711.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGAGCTAGAGAA.......................1630.67200000000020000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGAGCTAGAGAA.......................1590.33300000000030000000
droSec2
ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTA------------TCGGT--------------CTATGTTT----------------------------------------------------------------------------------------------------------------------------------AT---ATTC----------CAATTTCTGTG-GC----AGGATTGTTTTGTGAACTATATAGGTAT---------AGTA-------------------------------------------------------------------------ATGACAGAAAAATA------CATAATATATAAATCTA--------GTTTCTTTGAATT-CAAATTATTGAATTTAT-----TCAATAGG----------ATAAT-TTA-CCAAAAGCTTCGT-----------AT-----------TTAA---------------------------------------------------TTTTATTCTGAAAG--------------------CTTA---------------------------ATTGTTTAATAATTATGTCCTGTATATGT-----------------------------------------------------------------TGATTTCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATGGATGTTTCCACTTGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTG------------TCGGT--------------CGAAGATT----------------------------------------------------------------------------------------------------------------------------------CT---ATTA----------AAATTTATGTG-GT----AGGATTGTTTTGTGAAGTATGTAGGTAT---------TATATTGTT-------TAAACTGCT----------------------------------------------------ATGATAGAAAAATATTTTTGAGTGATGGATAAATCTAGCGCTGGAGTTTTGTTGAATT-CAAATTGTTCAATTTAT-----CCAAGCAG----------GCAAT-TTA-CCAGAAGCTTCGT-----------AT-----------TCCA---------------------------------------------------TTTAATTCTAAAAG--------------------CTTA---------------------------ATTTTTTAATAATTACCTCCTGTATATGT-----------------------------------------------------------------TAATTTCAGAATGCCATGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATATCTGGCTGTGTGTAC.......2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTAGAG.........................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGCTGTGTGTACGAT....1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGATATCTGGCTGTGTGTACGATGA..2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATCTGGCTGTGTGTA........2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTAGAGATATC....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATCTGGCTGTGTGTACGATGAC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCATGTGGTACTGAGC..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTCCTGTATATGT-----------------------------------------------------------------TAATTT.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGGATAAATCTAGCGCT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATATCTGGCTGTGTGTACGATGAC.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATATCTGGCTGTGT...........1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTGGTACTGAGCTAGAGATAT.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCATGTGGTACTGAGCTAG...........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTAGAGA........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTACTGAGCTAGAGATA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATATCTGGCTGTGTGTACGATGAC.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACTGAGCTAGAGAA.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCATGTGGTACTGAT...............................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATGGATGTTTCCACATGCGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGCTTAA---------------AAACTTACCTG------------TCGGA--------------AGAAGTTT----------------------------------------------------------------------------------------------------------------------------------CT---ATTA----------TAAT--------------AGGTTTATTTTGTCAAGCATGTAGTTATGCGCCACGATATATAGTT-------TAGACTGTT--GATGT---------------------------AAC--------------------AAAAAAAT-----TGAGTGACGTATAAA-----------------------TT-CAATTTGTTGTATTGATCTGGCCCAAACAG----------GCGAT-TCA-CCAGAAGCT-CGA-----------TT-----------CCGA---------------------------------------------------TATAATCCTAAAGT--------------------TTTA---------------------------ATTGTTTAATATTTTTCTTCTGTATACGT-----------------------------------------------------------------TGTTTTTAGAATGCCGTGTGGTACTGAGCTTGAGATATCTGGCTGTGTGTACGATGACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAGATATCTGGCTGTGTGTACGAT....2711.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------------------TTTA---------------------------ATTGTTTAATAA.............................................................................................................................................18200.3577000000
droYak3
ATGGATGTTTCCACTTGTGAAACTCCATACTACAATACTCTTTACAATGGGTAAGTGGGTTTAA---------------AAACTTACCTG------------TCGGA--------------AGAAGTTT----------------------------------------------------------------------------------------------------------------------------------CT---ATTA---------------TATGCG-AC----A---------------------------------CGAAA-----TG-------TAGACTGTTTTGATGT---------------------------AAC--------------------AAAAAAAT----TTGAGTGATAGAAAAATCAAGTAGTAGAGTTGTCTGGAATT-CAAGCTATTGCATTGAA------------------------------TA-CCAGAATCTTCTA-----------TT-----------CCGG---------------------------------------------------TACAATCCTAAAAG--------------------TTTA------------------A--------ATACTTTAATAATTATATCCTGTTTATGC-----------------------------------------------------------------TGTTTGCAGAATGCCGTGTGGTACTGAGCTAGAGATATCTGGCTGTGTGTACGATGACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCTGGCTGTGTGTACGAT....2220.50100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCTGGCTGTGTGTACGATGACG2620.50101000000000
droEug1
ATGGATGTTTCCACATGCGAAACTCCTTACTACAATACTCTTTACAATGGGTAAGTGGGATTAT----------------TACATACCTTATTAATCACGATTCAGGCAAAGCTTTGG---TGAAAAATATATTTGGGTTTATGATCAGGTAATAACCTTTGGTTGTT------------------AGTATACTTCGTTTTTTATACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGACACCA---------------------AAA-----------------------TTATATG--GTCACTGTGTTAATTT-CAAAAAA----------TC-----------------------------------------------------------------------------------------------------------ATAA----------------TTAAA--ATTA----AGGGTTTAATACTAGA--------TATTTTAATA-------------TATAT----------------------------------------------------------------TTATTTACAGAATGCCATGTGGCACTGAACTAGAGATATCCGGCTGTGTTTACGATGACGSizeHit CountTotal NormTotal
No Reads
droBia1
ATGGACGTTTCCACATGCGAAACTCCCTATTACAATACTCTTTACAATGGGTAAGTGGGATTTTGCGACGTATGTCTGTCTACTTACCTA-------------CAAG-----------TATCATACATTTTTG-----------------------------TACGTT------------------TGTCCCTTTTGTTTAAAGAACTTGTGACCCCATTTGTAGAGAAAAGGATTGTGCTCATC---------------A---ATCT----------AGATTTGTTTA--------A--------------------------------GAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTCCCTT-----------------------------------------------------------------ACTTTTACTTAACAGAATGCCTTGCGGAACTGAACTAGAGATAACCGGCTGTGTGTATGATGACGSizeHit CountTotal NormTotal
No Reads
droTak1
TTAAATATATAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTA------------------------------------------------------------------------CATTTTTTCTTAACAGAATGCCCTGCGGAACTGAACTAGAGATATCCGGCTGTGTGTACGATGACGSizeHit CountTotal NormTotal
No Reads
droEle1
ATGGACGTGTCAACATGCGAAACCCCCTACTACAATACTCTTTACAATGGGTAAGTGGCTATAA---------------AAACATACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATGGACGTGTCCACTTGCGAAACCCCCTACTACAATACTCTTTACAATGGGTAAGTA------A---------------TAACTTACCTG------------T-GTA--------------AGAT--------------------------------------------------------------ACTTC-------------------------------------------------------------------CT---GTTA----------ATGTTAATCCA-AT----AGGATGTTATTGTTATT-----AGCTAA---------GGGA------------------------------------AACTTG-----GTGT----TTTAATAAGTTTTAAAAAGTCACAGGA---------------------AAA-----------------------TATTAAG--GTAACTGTAATACATA-CATA--CATATATATTTGCGCTTTTATGAAGTTGGCAAAATATAAGTTTGTATAAAAGTTTTTTTCGGTATAAAAAATATGTCCATTATATTTGGGATTTTTTTCATTTGAGATAATAAATTAACTCTGT-AG--------------------C-TG---------------------------ATTATTTAATA-------------AATCATAATGCATTTAATGTTTTTTTAAATATATAAATATAAATACATTATCATGGTCTGTTTCATGTTTGTCTTACAGAATGCCCTGTGGCACTGAACTGGAGATATCCGGCTGTGTGTATGATGACGSizeHit CountTotal NormTotal
No Reads
droFic1
ATGGACGTTTCCACATGCGAAACTCCCTACTACAATACACTTTACAACGGGTGAGTAGGAATAT----------------AACATACCTG-------------CGAA--------------AGTAGATTTTTA-----------------------------TAGGTTGCAA--------------TGTTCC------------------------------------------------TTGTT---------------A---ATTT----------GGATTTGTGTGTGC----TA--------------------------------GAAAA-----TGTTTTTTATAAACTATATTAGTATAGATAGTAAACTTATTACTGTGAACTGAAT-------AATAAATAGTGACAGGA---------------------AAA-----------------------TG-TAAG--GTTTTATTGAGACTACCAAAGAAC----ATATTTGCAAT-TTCTGAAGAAGATACAA-----------AG-----------TGAA---------------------------------------------------T-----------TATTTAAAAACAAAATTATATTTTTG---ATTGGTTT---------GATCTTT---TTATATTAATTAT-----------------------------------------------------------------------CACATTTGATTTACAGAATGCCCTGTGGTACTGAATTGGAGATTTCTGGTTGTGTGTACGACGATGSizeHit CountTotal NormTotal
No Reads
droKik1
ATGGACGTCTCCACGTGCGAGACACCCTACTACAACACGCTCTACAATGGGTAAGTGTG---------------------GACTTACCTT------------G------------------AGTAGGATTTTG-----------------------------TTGGTTTTACTTGTTTTGGGACTATTCTTC------------------------------------------------CTGCTTTTTTTAGAAATCTCTCATATTATGTTCGATTCTAATTTCTAAG-TCGACAAGGAATTTTTTTTGAAT--------------------------------------------------------------------------------------------------------------------------------------------------ATTTGATTT-AAAAGAGTTGA--------------------------------------------------------------------------------------------------------------------------------------CATTTAGAACA--------------------CCTAACC-ATGGATTAACACTTTGTATCCTT---TCCTAAT------------------------------------------------------------------------------ACCCTTCCTAATAAGAATGCCGTGCGGCACCGAACTGGAGATATCCGGCTGTGTCTATGACGATGSizeHit CountTotal NormTotal
No Reads
droAna3
ATGGACGTCTCTACGTGTGAGACCCCCTACTACAACACTCTCTACAATGGGTGAGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............ACGTGTGAGACCCCCTACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
ATGGACGTCTCTACTTGTGAGACTCCTTACTTTAACACTCTCTACAATGGGTAAGTGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATGGACGTGTCCACCTGCGAGACACCCTACTACAACACTCTGTACAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATGGACGTGTCCACCTGCGAGACACCCTACTACAACACTCTGTACAATGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATGGATGTTTCTACATGTGAAACTCCCTACTATAATACGCTTTATAATGGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAAAGG-------------------------------------------------------------------------------T-----------------------------------TGCTGCATAATTATACTTTGCTTGAAAT--CTCTTTTAGGATGCCCTGCGGCAGCGAGCTGGAAATCTCGGGCTGTGTCTATGATGATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCGAGCTGGAAATCT.....................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCTGCGGCAGCGAGCT.............................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATGGATGTGTCTACGTGCGAGACACCCTACTACAATACGCTATATAATGGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................GACACCCTACTACAATACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
ACTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATA-------------AATATTAAT-------------------------------------------------------------AACTTCTAGCATGCCCTGCGGCAGTGAGTTGGAAATATCTGGTTGTGTCTACGATGATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGTTGTGTCTACGATG...2011.00110

Generated: 05/18/2015 at 10:44 PM