ID:

dsi_3256

 Coordinate:

x:10758576-10758807 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.2 -40.2 -40.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATTGTTGGGTGAACAGCCCAATTACCCAATTGGCTTCGGCGATATGCGATCCCATGTCTCGGTCATTTGTCCTGTAACTAAAACGGAATCTGTTGCTAATCTTCTGTATTCTTTTCTATTTTATTTGATTTCTTATGGTTGTGGTGCTTCAAAATACACACACACAAATTGTTCGCTTTAATATGAAAACAAATAAATCCAAAATAAATTCTCAAATCACATACAGAACGTATCCATCGACAGCGTAAGTATCTCGTGAGTTGTTCACGCAACCTT
**************************************************(((((((..(((((((.....)))))))))).(((.((((..(((.((((((......))))))))))))).))).............((((((.............))))))............((((((((.((((.(((..((((((((............))).))))).............))).)))).))))))))...................))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
..........................CTGAGTCTTCGGCTGCAGGA.............................................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
..AACGCCAACGAGGAGGTGCGCGGCC................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........GAGGAGGTGCGCGGCCTGAGG............................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................GGTGCGCGGCCTGAGTCT.......................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................GGCCTGAGTCTTCGGCTGC.................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................ACTAAAACGGAATCTGTTGCTAATCTT............................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TGATTGGATTTCTTATGGTTGT...................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................CAGGAGAATGTGAGTATT................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................CGGCCTTAGTCGTCGG...................................................................................................................................................................................................................................................................................................... 16 2 20 0.70 14 0 0 0 0 0 0 0 12 2 0 0
...........................................................................................................................................................................................................................................................................TCAAATCACATATAGACCG.............................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTTGATTTCTGATAGTTGTGG.................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................TGGATTTCTGATGGTTGTGGTT.................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................TGTTTGGATTTCTTATGGTTGTG..................................................................................................................................... 23 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATTTCTGATGGTTGTGGAG.................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................CTGTAACTATAACGG.............................................................................................................................................................................................. 15 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................CTCGTGTGTTGTTCA......... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................ATCTCGTGTGTTGTAC.......... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0
................................................................................................................................................................................TGAATTGATTTCTTATCGTTG....................................................................................................................................... 21 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AGAACATATCCATCG..................................... 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATCTCGTGTGTTGTACA......... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................TCACGTGAGTTGTTAACTC...... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATCTCGTGTGTTGTT........... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................CATTTGATTTCTTATGGTGT....................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TACTAAGCTTCTGTATT...................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTTGCGGTTGCTCCTCCACGCGCCGGACTCAGAAGCCGACGTCCTCTTACACTCATAACAACCCACTTGTCGGGTTAATGGGTTAACCGAAGCCGCTATACGCTAGGGTACAGAGCCAGTAAACAGGACATTGATTTTGCCTTAGACAACGATTAGAAGACATAAGAAAAGATAAAATAAACTAAAGAATACCAACACCACGAAGTTTTATGTGTGTGTGTTTAACAAGCGAAATTATACTTTTGTTTATTTAGGTTTTATTTAAGAGTTTAGTGTATGTCTTGCATAGGTAGCTGTCGCATTCATAGAGCACTCAACAAGTGCGTTGGAA
**************************************************(((((((..(((((((.....)))))))))).(((.((((..(((.((((((......))))))))))))).))).............((((((.............))))))............((((((((.((((.(((..((((((((............))).))))).............))).)))).))))))))...................))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 O001
Testis
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................................................................................................................................................................ATAAGAAGCTGTCGCATTCATAT....................... 23 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................TAAGAAGCTGTCGCATTCATAT....................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................ATAAGAAGCTGTCGCATTCATA........................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATAAGAAAAGATAAAATA........................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................ACCGAAGCCGCTATACGC.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................TAACCACCCACTTGTTAGGTT............................................................................................................................................................................................................................................................... 21 3 5 0.80 4 2 2 0 0 0 0 0 0 0 0 0
.......................................................ATAACCACCCACTTGT..................................................................................................................................................................................................................................................................... 16 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0
..........................................................ACCACCCACTTGTTAGGTT............................................................................................................................................................................................................................................................... 19 3 20 0.55 11 3 5 0 0 0 0 0 3 0 0 0
.......................................................ATAACCACCCACTTGTTAGGTT............................................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGCTATACGCAAGGGTACCC.......................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................ACCCACTTGTTAGGTTGATGGG......................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................TCTTGTATAGGTAGC..................................... 15 1 13 0.23 3 0 0 3 0 0 0 0 0 0 0 0
........................................................TAACCACCCACTTGTTAGGT................................................................................................................................................................................................................................................................ 20 3 10 0.20 2 1 1 0 0 0 0 0 0 0 0 0
TTTGGCGGTTGCAGCTCCAC........................................................................................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................TACGTCTTGTATAGGTAG...................................... 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TTTAAGAGTTTAGTTT....................................................... 16 1 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
........................................................TAACCACCCACTTGT..................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................AACCACCCACTTGTTAGGTT............................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................ACGTCTTGTATAGGTAGC..................................... 18 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................TGTAATTAGGCTTTATTTAAG................................................................. 21 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAAAGTGCGTTGGAA 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................TACCAACACCCCGAACTTTA.......................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................ATGTGTGTGTGTTTA........................................................................................................... 15 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AGAGAACTTAAACTAAAGAAT............................................................................................................................................. 21 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CGATTAGAAGAGATAGCAA................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................GCATAGGTAGATGTTGCAC............................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0
.........................................GTCCTTTTAGACTCATA.................................................................................................................................................................................................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0
....................TCGGCGGACTCAGAATCC...................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................TGGGTTATATAGGTTTTATT..................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:10758526-10758857 - dsi_3256 AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATTGT----TGGGTGAAC------A-G--CCC--------------AATTACCCAATTGGCTTCG-------G-----------C---GATATGCGA-TCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----TGAA------------AAC-AA----------------ATAAAT-CC-----AAAATAAAT-TC------------------------------T-CAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGCA----------ACC---TT
droSec2 scaffold_36:52735-53058 - AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATTGT----TGGGTGAAC------A-G--CCC--------------AA--------TTGGCTTCG-------G-----------C---GATATGCGA-TCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----TGAA------------AAC-AA----------------ATAAAT-CC-----AAAATAAAT-TC------------------------------T-CAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGCA----------ACC---TT
dm3 chrX:11330775-11331105 - AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTACGGCTGCAGGAGAATGTGAGTATTGAGTACTGGGTGACC------A-G--CCC--------------AA--------TTAGCTTCG-------G-----------C---GATATGCGA-CCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAATATAC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----CGAA------------AAC-AA----------------ATAAAT-TC-----AAAATAAAT-TC------------------------------T-AAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGTA----------ACC--TTT
droEre2 scaffold_4690:3824509-3824827 + AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTAAGTATTGT----TGGGTGGCC------A-G--CCCA-----------------------TTAGGTTCG-------G-----------C---AATACTCGA-CCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AATTTGTTCGC----TT-AATA-----CGAA------------AA--AA----------------ATAAAT-TC-----AATATAAAT-CC------------------------------C-CAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GGGTTGTTCACGCA----------ACC---TT
droYak3 X:10821845-10822168 + dya_1388 AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGTCTGCAGGAGAATGTAAGTATTGT----TGGGTGGCC------C-A--CCCA-----------------------TTAACTTTG-------G-----------C---GATACTCGA-CCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----CAAA------------AAAAAA----------------ATAAAT-TC-----AAAATAAAT-CC------------------------------C-CAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGCA----------ACC---TT
droEug1 scf7180000408176:501885-502209 - AAAATGCCAATGAGGAGGTGCGCGGCTTGAGTCTGCGGCTGCAGGAGAATGTGAGTATAGATT-TAGTGTGACC------A-AAGTCCA-----------------------TTAA------------------------C---AATCAAAGAAGCCC-CTGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATATG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAATTCAAT-ACAC-A-------------------CAA-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTAAATC-----CGAA------------AAA-AA----------------ACAAAA-AC-----AAAATCAAT-TT------------------------------T-CAAAT----------CACAAACAGAATGTATCCATCGACAGCGTAAGTA----TCTTAT--------AGGTTGCTCACGCA----------ACT---CA
droBia1 scf7180000301760:411583-411909 - AGAACGCCAACGAGGAGATCCGCGGCCTGAGTCTGCGGCTGCAGGAGAATGTGAGTATAGC----TT-GTGGCC------A-A--GCCA-----------------------TCCCTTTCA-------G-----------C---GAT-------CCCA-ATCTC---------T-CGGTCATATG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------GTCTGTAT-CC-TTTTCTATTTTATTTAATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTAAATC-----CGATATCGATATCCGAAAT-AA----------------ATGTATTTC-----AAAATAAAC-AA------------------------------A-CCAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTGGT--------GGGTTGCTCACGCA----------ACC---TT
droTak1 scf7180000415843:285970-286281 - AAAACGCCAACGAGGAGGTTCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATC---------------------A-A--ACC--------------AC--------TGATCTCCA-------A-----------CGATCTTCAACGATCCCC-TTGCC---------T-CGGTCACTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTGTGTAT-TC-TTTTCTATTTTATTTGATTTTTCTTATGGTTGTGGTTCTTC-AAAAT--AC---AC-C-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----CGAA------------AAA-AA---------ACAAAACAAAAAT-TC-----GAAATAAAT-AT------------------------------TACAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTTGT---------------------A----------ACC---TT
droEle1 scf7180000491193:394288-394627 + AAAACGCCAATGAGGAGGTCCGCGGCTTGAGTCTTCGCCTTCAGGAGAATGTGAGTATATT-------GTGGCCATCTC-C-G--TGA--ACT---------CATCCC----TCAAATACA-------T-----------C---GATCCCCGA-CCCCAATGTC---------T-CGGTCATGTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAATT--AC---AC-A-------------------CACA----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----CGAA------------AAA-AA---------AAACAAAAAAAAT-AG-----AAAATAAAT-AC------------------------------T-CAAAT----------CCCATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGCCACTCACGCA----------ACC---TC
droRho1 scf7180000779986:329588-329912 - AAAACGCCAATGAGGAGGTCCGCGGCCTGAGTCTTCGCCTTCAGGAGAATGTGAGTATATT-------GTGGCC------C-ACGTCA-CACTCTAAATATA------------------A-------T-----------T---GATCCCCGA-CCCC-TTGTC---------T-CGGTCATGTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----TGAA------------AAA-AA------------C---AAAAAA-TC-----AAAATAAAT-AC------------------------------T-CAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGCTACTCACGCA----------ACC---TT
droFic1 scf7180000453872:143520-143831 - AGAACGCCAACGAGGAGGTGCGCGGCTTGAGCCTCCGCCTGCAGGAGAATGTGAGTATATT-------GTGATC------C-G--TCC--------------CA--------TCCGCTCCA-------G-----------C---GATCCCTGA-ACCC-TCGTC---------T-CGGTCAAATG--TCCTGTAACTAAA------C-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TCCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------A-AATGTTCGC----TTTAATC-----CGAA------------AAA-AA----------------A-------C-----AAAATAAAT-TA------------------------------T-CAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAAATGCTCACGCA----------ACC---TT
droKik1 scf7180000302395:281351-281667 - AGAATGCCAACGAGGAGGTACGCGGACTTAGCCTACGACTGCAGGAGAATGTGAGTATACA-------TAAATC--------------------------TG------------------A-------T-----------C---AATCAAATC-CCCC-TTGTC-----------------CTTG--TCCTGTAACTAAA------A-------TT-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTATAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAATT--AC---AC-A-------------------CACA------------------------------------------------------------CACACCCATACTACATACACATAT------------------------------------------ACACAAAATGTTCGC----TTTAATA-----CATA------------AAA-A-------------------AAAT-TCAACAAAAAATAAAT-GC------------------------------T-----T----------TAAAAACAGAATGTATCCATCGACAGCGTAAGTACAATTCTCGT--------GA-----------------------CT---AT
droAna3 scaffold_13248:1801084-1801377 - dan_1522 AGAACGCCAACGAGGAGGTCCGCGGCCTGAGTCTTCGTCTGCAGGAGAACGTAAGTGTCCT-----GGGGGTTC---------------------------------------------TGCCTCCT--GCCACCTGTC------------------------------------------------CCCCGTATCTAAA------AA------TC-----------------------------------------------------------------------------------AAATCTG-TTGCTAATCC------------ATCTGTAT-TT-TTTTCTATTTTATTTGGTTT--CTTGTGGTTGTGGTGCTTCCAAAAA--AA-AAAA-A-------------------TAA-----------------------------------------------------------------------------------------------------------------------------------AAATAAT-AA-------TAATA-----AT-----------TAAAAA-AA----------------AAAAATTAT-----GAAAAAAAT-----------------------------------GAAAT----------AAAAAACAGAATGTATCCATCGACAGTGTAAGTA----TCTTTT--------GGGTTGCTACTGCA----------ACTG-ACT
droBip1 scf7180000395958:13479-13806 + AGAACGCCAATGAGGAGGTCCGTGGGCTGAGTCTTCGTCTCCAGGAGAACGTAAGTGTCGA-----GGGTGTCC---------------------------------------------TGGCA-----GGCCTTTGTC------------------------------------------------CTTTGTATCTAAA------AAAAGAAATG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATCC------------ATCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTGTGGTTGTGGTGCTTC-AAACA--ACAACAACA--------------CAC--------------TCACTCACAC----------------------------------------------------------------------------------------------------------------ACCCTGTTTGC----TTTAATC-----CTTA------------AAC-GAAAAAATCAAAA--------AAT-AA-----AAAATATATATC------------------------------T-GAAA-----AATATATATATACAGAATGTGTCCATCGACAGTGTAAGTA----TCCTTT--------AAGTTGCCACAGCA----------ACTGATAT
dp5 XL_group1e:6030621-6030949 + AGAATGCCAACGAAGAGGTTCGTGGTCTCAGTCTTCGGCTGCAGGAGAATGTAAGTACAGT----CGCCCGCCC---------------------------------------TGA------TATCGC------CTGTCT--------TCCGC-CTCT-ACCTCTCACTCTTCT-CGA----TTGAAACCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATATG-TTGCTAATC--------TGTACTTCTGTGT-TC-TTTTCCATTTTATTTGATTTCCTTTATGGTTGTGGTGCTTC-A------------C-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----AAAT------------------------CAAAAACAAAAACA-------------ATACACACC------------------------------C-CAAATGCAAA--AAAAACATACAGAATGTATCCATCGACAGCGTAAGTA----ACTCCAAAAAAAAGGAAT--------AA----------ACA---TT
droPer2 scaffold_21:989139-989470 + AGAATGCCAACGAAGAGGTTCGTGGTCTCAGTCTTCGGCTGCAGGAGAATGTAAGTACAGT----CGCCCGCCC---------------------------------------TGC------CATCGC------CTGTCT--------TCCGC-CTCT-ACCTCTCACTCTTATCCGA----TTGAAACCTGTAACTAAA------A-------CG-----------------------G-----------------------------------------------------------GAATATG-TTGCTAATC--------TGTACTTCTGTGT-TC-TTTTCCATTTTATTTGATTTCCTTTATGGTTGTGGTGCTTC-A------------C-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----AAAT------------------------CAAAAACAAAAACA-------------ATACACACC------------------------------C-CAAATGCAAA-AAAAAACATACAGAATGTATCCATCGACAGCGTAAGTA----ACTCCAAAAAAAGAGAAT--------AA----------ACA---TT
droWil2 scf2_1100000004590:1463831-1464193 + dwi_1784 AGAACGCCAATGAGGAGGTTCGTGGCCTGAGCTTGCGTCTGCAGGAGAATGTAAGTATCCA-------CTGCTC---------------------------------------------CG-------A-----------C---TACTTTCTA-CCAC-------------------TTTAAGTGACAACTGTGACTAAACTCAAAA-------CG-----------------------AGAACAGAAAGAAAGAA-------------------------------------------AAACCCA-TTGCTAATCCAATTATTTATATTTCTTAAA-TC-TTTTCCATCTTTTT---TTT--CTTATGGTTGTGGTGCGTC-AATAC--A-----------------------------CAAAAATGTTTTACTCTTACACTATATTATAATACATATCTAAACACTATATTACACACACACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------ACACA------------------------------T-AAAACG---------CATAAACAGAACGTTTCCATTGACAGCGTGAGTA----TTTTGC--------GAGTGGCTTTA--AATGTTAAGCCACCAAATT
droVir3 scaffold_12726:1070002-1070394 + dvi_1877 AGAATGCCAACGAGGAGGTGCGCGGTCTCAGTCTGCGGCTACAGGAAAATGTAAGTATTGT----CTAATATCA--------AAGTTTA-----------------------TCGC------TATTG-G----------------ATA-------------TTT---------T-CGG----TTG--TTTTGTAACTAAA------AACTGA---AGAAAAAATGAA--AATAATTAAGAA-------------AA-----------------------AAATCGTGCTTTACCAATCGAAAGCTGTTTGTTAATC-----A------TTTCTGTCTTTC-TTTTCCATTCTGTTT-ATTT--CTTATGGTTATGGTGCTTA-AAACA--AAAAAAAAAAAAACAAAAAAAATCTCTCA----------------------------------------------------------------------ATATCCAAAA-----------------------------------AACTGGTAATCCAATTTCCAAACGTTTGC----TTAAAAA-----TATA------------AAAAAA----------------ATAAAT-AA-----AAT----------------ACAAT-----ACGTAAAATTTGCT--CAAC----------GCCAAGCAGAACGTTTCAATCGATAGCGTAAGTA----TC--------------------------------------------
droMoj3 scaffold_6473:9093882-9094318 - AGAATGCCAACGAGGAGGTGCGCGGCCTCAGCCTGCGGCTACAGGAGAATGTAAGTGTTGT----ATAAGACCA----CAACGAATTTA-----------------------------------------------------------------ACAC-TATTC---------T-CGA----TTG--TCTTGTAACTAAA------AACTG---CTGAAA--CTGAAGAAATTATAAAGAG-------------AAAATAGTGCTAAACTGAATTATCGAAGTCGTGCTAAATCTATAGATATACGTTTGTTAATC-----A------TTTCTGTCTTTCTTTTTCCATTCTGTTT-ATTT--CTTGTGGTTGTGGTGCTTA-AAAAC--AT---GC-A-------------------TAT----------------------------------------------------------------------ATCTCAAACAAATATGTCGAAATCAAAATAACTAAACATTCCAAA-TGGTAATCCAATCGCAAAACGTTTGC----TTTAAAAAAAAATATA------------AAT-AA----------------ATAAAT-AA-----AAAAAAA------------AAAAT-----CCATGAAAATTGCTGCCAAC----------GTCAAGCAGAACGTTTCGATCGATAGCGTAAGTA----TCTC------------------------------------------
droGri2 scaffold_15203:379242-379616 - AGAATGCCAACGAGGAAGTGCGCGGTCTCAGTCTGCGGCTACAGGAAAATGTAAGTGTTGC----CTAACGCCC--------AAATTCA-----------------------TTAA--TCG-------T-----------C---GCTA-------------TTC---------T-CAG----TTG--TATTGTAACTAAA------AACCGA---AAA-------------------------------------------------------------AAGCCGTGCTAAAGCAATAGTAAGCTGTTTGTTAATA-----A------TTTCTGTCTTTC-TTTTCCATTCTGTTT-ATTT--CTTATGGTTATGGTGCTTA-AAACA--AAAACAA--------------ATATCCCA----------------------------------------------------------------------ATATCTCAAA-----------------------------------AA-CGTTGATCCACATCTTAAACGTTTGCACAATTAAATA-----TAAA------------AAA-A-------------------CAAT-AA-----ACAATAAAT-AAAACAAACAAAACTACAAACGTATAATTTGCT--CAAC----------GCCAAACAGAACGTTTCAATCGATAGCGTAAGTA----TC--------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATTGT----TGGGTGAAC------A-G--CCC--------------AATTACCCAATTGGCTTCG-------G-----------C---GATATGCGA-TCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----TGAA------------AAC-AA----------------ATAAAT-CC-----AAAATAAAT-TC------------------------------T-CAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGCA----------ACC---TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................CTGAGTCTTCGGCTGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201100000000000000
..AACGCCAACGAGGAGGTGCGCGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...........GAGGAGGTGCGCGGCCTGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
................GGTGCGCGGCCTGAGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.......................GGCCTGAGTCTTCGGCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..................................................................................................................................................................................................ACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
.........................................CAGGAGAATGTGAGTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATTGT----TGGGTGAAC------A-G--CCC--------------AA--------TTGGCTTCG-------G-----------C---GATATGCGA-TCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----TGAA------------AAC-AA----------------ATAAAT-CC-----AAAATAAAT-TC------------------------------T-CAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGCA----------ACC---TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....GCCAACGAGGAGGTGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTACGGCTGCAGGAGAATGTGAGTATTGAGTACTGGGTGACC------A-G--CCC--------------AA--------TTAGCTTCG-------G-----------C---GATATGCGA-CCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAATATAC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----CGAA------------AAC-AA----------------ATAAAT-TC-----AAAATAAAT-TC------------------------------T-AAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGTA----------ACC--TTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......CAACGAGGAGGTGCGCGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGTGCGCGGCCTGAGTCTACGGCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGCGCGGCCTGAGTCTACGGCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTATTTGATTT--CTTATGGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAACGCCAACGAGGAGGTGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTATCCATCGACAGC.........................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTACGGCTGCAGGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....CGCCAACGAGGAGGTGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGAGGTGCGCGGCCTGAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACGCCAACGAGGAGGTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...............AGGTGCGCGGCCTGAGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCATCGACAGCGTAA.....................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTGCGCGGCCTGAGTCTACGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGAGTCTACGGCTGCAGGAGAATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCGCGGCCTGAGTCTACGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGGTGCGCGGCCTGAGTCTACGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGGTGCGCGGCCTGAGTCTACGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGGCCTGAGTCTACGGCTGCAGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGAGGTGCGCGGCCTGAGTCTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACGAGGAGGTGCGCGGCCTGAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................CGGCCTGAGTCTACGGCTGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TACGGCTGCAGGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCGGCCTGAGTCTACGGCTGCAGGAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGAGGTGCGCGGCCTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TTGATTT--CTTATGGTTGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGGTGCGCGGCCTGAGTCTACGGCTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGAGGTGCGCGGCCTGAGTCTACGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCTACGGCTGCAGGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...........GAGGAGGTGCGCGGCCTGAGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GAGGTGCGCGGCCTGAGTCTACGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AACGCCAACGAGGAGGTGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GTCTACGGCTGCAGGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTAAGTATTGT----TGGGTGGCC------A-G--CCCA-----------------------TTAGGTTCG-------G-----------C---AATACTCGA-CCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AATTTGTTCGC----TT-AATA-----CGAA------------AA--AA----------------ATAAAT-TC-----AATATAAAT-CC------------------------------C-CAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GGGTTGTTCACGCA----------ACC---TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................CTGAGTCTTCGGCTGCAGGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
......................................................................................................................................................................................................................................................................................................................................................................TTT--CTTATGGTTGTGGGT............................................................................................................................................................................................................................................................................................................................................................................................................18100.1010001000
droYak3
AAAACGCCAACGAGGAGGTGCGCGGCCTGAGTCTTCGTCTGCAGGAGAATGTAAGTATTGT----TGGGTGGCC------C-A--CCCA-----------------------TTAACTTTG-------G-----------C---GATACTCGA-CCCC-ATGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC-ACAC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAATTGTTCGC----TTTAATA-----CAAA------------AAAAAA----------------ATAAAT-TC-----AAAATAAAT-CC------------------------------C-CAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGTTGTTCACGCA----------ACC---TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................C-A--CCCA-----------------------TTAACTTTG-------G-----------C---GATACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
..........................CTGAGTCTTCGTCTGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATCGACAGCGTAAGT...................................................1911.00100000010000
.......................GGCCTGAGTCTTCGTCTGCAGGAGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
AAAATGCCAATGAGGAGGTGCGCGGCTTGAGTCTGCGGCTGCAGGAGAATGTGAGTATAGATT-TAGTGTGACC------A-AAGTCCA-----------------------TTAA------------------------C---AATCAAAGAAGCCC-CTGTC---------T-CGGTCATTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATATG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAATTCAAT-ACAC-A-------------------CAA-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTAAATC-----CGAA------------AAA-AA----------------ACAAAA-AC-----AAAATCAAT-TT------------------------------T-CAAAT----------CACAAACAGAATGTATCCATCGACAGCGTAAGTA----TCTTAT--------AGGTTGCTCACGCA----------ACT---CASizeHit CountTotal NormTotal
No Reads
droBia1
AGAACGCCAACGAGGAGATCCGCGGCCTGAGTCTGCGGCTGCAGGAGAATGTGAGTATAGC----TT-GTGGCC------A-A--GCCA-----------------------TCCCTTTCA-------G-----------C---GAT-------CCCA-ATCTC---------T-CGGTCATATG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------GTCTGTAT-CC-TTTTCTATTTTATTTAATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTAAATC-----CGATATCGATATCCGAAAT-AA----------------ATGTATTTC-----AAAATAAAC-AA------------------------------A-CCAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTGGT--------GGGTTGCTCACGCA----------ACC---TTSizeHit CountTotal NormTotal
No Reads
droTak1
AAAACGCCAACGAGGAGGTTCGCGGCCTGAGTCTTCGGCTGCAGGAGAATGTGAGTATC---------------------A-A--ACC--------------AC--------TGATCTCCA-------A-----------CGATCTTCAACGATCCCC-TTGCC---------T-CGGTCACTTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTGTGTAT-TC-TTTTCTATTTTATTTGATTTTTCTTATGGTTGTGGTTCTTC-AAAAT--AC---AC-C-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----CGAA------------AAA-AA---------ACAAAACAAAAAT-TC-----GAAATAAAT-AT------------------------------TACAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTTGT---------------------A----------ACC---TTSizeHit CountTotal NormTotal
No Reads
droEle1
AAAACGCCAATGAGGAGGTCCGCGGCTTGAGTCTTCGCCTTCAGGAGAATGTGAGTATATT-------GTGGCCATCTC-C-G--TGA--ACT---------CATCCC----TCAAATACA-------T-----------C---GATCCCCGA-CCCCAATGTC---------T-CGGTCATGTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAATT--AC---AC-A-------------------CACA----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----CGAA------------AAA-AA---------AAACAAAAAAAAT-AG-----AAAATAAAT-AC------------------------------T-CAAAT----------CCCATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGCCACTCACGCA----------ACC---TCSizeHit CountTotal NormTotal
No Reads
droRho1
AAAACGCCAATGAGGAGGTCCGCGGCCTGAGTCTTCGCCTTCAGGAGAATGTGAGTATATT-------GTGGCC------C-ACGTCA-CACTCTAAATATA------------------A-------T-----------T---GATCCCCGA-CCCC-TTGTC---------T-CGGTCATGTG--TCCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----TGAA------------AAA-AA------------C---AAAAAA-TC-----AAAATAAAT-AC------------------------------T-CAAAT----------CACATACAGAACGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAGCTACTCACGCA----------ACC---TTSizeHit CountTotal NormTotal
No Reads
droFic1
AGAACGCCAACGAGGAGGTGCGCGGCTTGAGCCTCCGCCTGCAGGAGAATGTGAGTATATT-------GTGATC------C-G--TCC--------------CA--------TCCGCTCCA-------G-----------C---GATCCCTGA-ACCC-TCGTC---------T-CGGTCAAATG--TCCTGTAACTAAA------C-------CG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TCCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAAAT--AC---AC-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------A-AATGTTCGC----TTTAATC-----CGAA------------AAA-AA----------------A-------C-----AAAATAAAT-TA------------------------------T-CAAAT----------CACATACAGAATGTATCCATCGACAGCGTAAGTA----TCTCGT--------GAAATGCTCACGCA----------ACC---TTSizeHit CountTotal NormTotal
No Reads
droKik1
AGAATGCCAACGAGGAGGTACGCGGACTTAGCCTACGACTGCAGGAGAATGTGAGTATACA-------TAAATC--------------------------TG------------------A-------T-----------C---AATCAAATC-CCCC-TTGTC-----------------CTTG--TCCTGTAACTAAA------A-------TT-----------------------------------------------------------------------------------GAATCTG-TTGCTAATC-------------TTCTATAT-TC-TTTTCTATTTTATTTGATTT--CTTATGGTTGTGGTGCTTC-AAATT--AC---AC-A-------------------CACA------------------------------------------------------------CACACCCATACTACATACACATAT------------------------------------------ACACAAAATGTTCGC----TTTAATA-----CATA------------AAA-A-------------------AAAT-TCAACAAAAAATAAAT-GC------------------------------T-----T----------TAAAAACAGAATGTATCCATCGACAGCGTAAGTACAATTCTCGT--------GA-----------------------CT---ATSizeHit CountTotal NormTotal
No Reads
droAna3
AGAACGCCAACGAGGAGGTCCGCGGCCTGAGTCTTCGTCTGCAGGAGAACGTAAGTGTCCT-----GGGGGTTC---------------------------------------------TGCCTCCT--GCCACCTGTC------------------------------------------------CCCCGTATCTAAA------AA------TC-----------------------------------------------------------------------------------AAATCTG-TTGCTAATCC------------ATCTGTAT-TT-TTTTCTATTTTATTTGGTTT--CTTGTGGTTGTGGTGCTTCCAAAAA--AA-AAAA-A-------------------TAA-----------------------------------------------------------------------------------------------------------------------------------AAATAAT-AA-------TAATA-----AT-----------TAAAAA-AA----------------AAAAATTAT-----GAAAAAAAT-----------------------------------GAAAT----------AAAAAACAGAATGTATCCATCGACAGTGTAAGTA----TCTTTT--------GGGTTGCTACTGCA----------ACTG-ACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................GGTCCGCGGCCTGAGTCTTCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTATCCATCGACAGT.........................................................2011.001000001
droBip1
AGAACGCCAATGAGGAGGTCCGTGGGCTGAGTCTTCGTCTCCAGGAGAACGTAAGTGTCGA-----GGGTGTCC---------------------------------------------TGGCA-----GGCCTTTGTC------------------------------------------------CTTTGTATCTAAA------AAAAGAAATG-----------------------------------------------------------------------------------GAATCTG-TTGCTAATCC------------ATCTGTAT-TC-TTTTCTATTTTATTTGATTT--CTTGTGGTTGTGGTGCTTC-AAACA--ACAACAACA--------------CAC--------------TCACTCACAC----------------------------------------------------------------------------------------------------------------ACCCTGTTTGC----TTTAATC-----CTTA------------AAC-GAAAAAATCAAAA--------AAT-AA-----AAAATATATATC------------------------------T-GAAA-----AATATATATATACAGAATGTGTCCATCGACAGTGTAAGTA----TCCTTT--------AAGTTGCCACAGCA----------ACTGATATSizeHit CountTotal NormTotal
No Reads
dp5
AGAATGCCAACGAAGAGGTTCGTGGTCTCAGTCTTCGGCTGCAGGAGAATGTAAGTACAGT----CGCCCGCCC---------------------------------------TGA------TATCGC------CTGTCT--------TCCGC-CTCT-ACCTCTCACTCTTCT-CGA----TTGAAACCTGTAACTAAA------A-------CG-----------------------------------------------------------------------------------GAATATG-TTGCTAATC--------TGTACTTCTGTGT-TC-TTTTCCATTTTATTTGATTTCCTTTATGGTTGTGGTGCTTC-A------------C-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----AAAT------------------------CAAAAACAAAAACA-------------ATACACACC------------------------------C-CAAATGCAAA--AAAAACATACAGAATGTATCCATCGACAGCGTAAGTA----ACTCCAAAAAAAAGGAAT--------AA----------ACA---TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................GGTTCGTGGTCTCAGTCTTCGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
.....................GTGGTCTCAGTCTTCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
AGAATGCCAACGAAGAGGTTCGTGGTCTCAGTCTTCGGCTGCAGGAGAATGTAAGTACAGT----CGCCCGCCC---------------------------------------TGC------CATCGC------CTGTCT--------TCCGC-CTCT-ACCTCTCACTCTTATCCGA----TTGAAACCTGTAACTAAA------A-------CG-----------------------G-----------------------------------------------------------GAATATG-TTGCTAATC--------TGTACTTCTGTGT-TC-TTTTCCATTTTATTTGATTTCCTTTATGGTTGTGGTGCTTC-A------------C-A-------------------CAC-----------------------------------------------------------------------------------------------------------------------------------AAAATGTTCGC----TTTAATC-----AAAT------------------------CAAAAACAAAAACA-------------ATACACACC------------------------------C-CAAATGCAAA-AAAAAACATACAGAATGTATCCATCGACAGCGTAAGTA----ACTCCAAAAAAAGAGAAT--------AA----------ACA---TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................GTTCGTGGTCTCAGTCTTCGGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................CGTGGTCTCAGTCTTCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
droWil2
AGAACGCCAATGAGGAGGTTCGTGGCCTGAGCTTGCGTCTGCAGGAGAATGTAAGTATCCA-------CTGCTC---------------------------------------------CG-------A-----------C---TACTTTCTA-CCAC-------------------TTTAAGTGACAACTGTGACTAAACTCAAAA-------CG-----------------------AGAACAGAAAGAAAGAA-------------------------------------------AAACCCA-TTGCTAATCCAATTATTTATATTTCTTAAA-TC-TTTTCCATCTTTTT---TTT--CTTATGGTTGTGGTGCGTC-AATAC--A-----------------------------CAAAAATGTTTTACTCTTACACTATATTATAATACATATCTAAACACTATATTACACACACACACAC-------------------------------------------------------------------------------------------------------------------------------------------------------ACACA------------------------------T-AAAACG---------CATAAACAGAACGTTTCCATTGACAGCGTGAGTA----TTTTGC--------GAGTGGCTTTA--AATGTTAAGCCACCAAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................CTGAGCTTGCGTCTGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
....................CGTGGCCTGAGCTTGCGTCTGCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...................................CGTCTGCAGGAGAATGTAAGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
................GGTTCGTGGCCTGAGCTTGCGTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....CGCCAATGAGGAGGTTCGTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...................TCGTGGCCTGAGCTTGCGTCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
AGAATGCCAACGAGGAGGTGCGCGGTCTCAGTCTGCGGCTACAGGAAAATGTAAGTATTGT----CTAATATCA--------AAGTTTA-----------------------TCGC------TATTG-G----------------ATA-------------TTT---------T-CGG----TTG--TTTTGTAACTAAA------AACTGA---AGAAAAAATGAA--AATAATTAAGAA-------------AA-----------------------AAATCGTGCTTTACCAATCGAAAGCTGTTTGTTAATC-----A------TTTCTGTCTTTC-TTTTCCATTCTGTTT-ATTT--CTTATGGTTATGGTGCTTA-AAACA--AAAAAAAAAAAAACAAAAAAAATCTCTCA----------------------------------------------------------------------ATATCCAAAA-----------------------------------AACTGGTAATCCAATTTCCAAACGTTTGC----TTAAAAA-----TATA------------AAAAAA----------------ATAAAT-AA-----AAT----------------ACAAT-----ACGTAAAATTTGCT--CAAC----------GCCAAGCAGAACGTTTCAATCGATAGCGTAAGTA----TC--------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................TTTGTAACTAAA------AACTGA---AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................CTCAGTCTGCGGCTACAGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TT---------T-CGG----TTG--TTTTGTAACTAAA------AACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
.......CAACGAGGAGGTGCGCGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.........ACGAGGAGGTGCGCGGTCTCAGTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTACCAATCGAAAGCTGTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..AATGCCAACGAGGAGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA-----TATA------------AAAAAA----------------ATA..........................................................................................................................................................1950.402000000000000000000000110000000000000000000000000000000000000000
droMoj3
AGAATGCCAACGAGGAGGTGCGCGGCCTCAGCCTGCGGCTACAGGAGAATGTAAGTGTTGT----ATAAGACCA----CAACGAATTTA-----------------------------------------------------------------ACAC-TATTC---------T-CGA----TTG--TCTTGTAACTAAA------AACTG---CTGAAA--CTGAAGAAATTATAAAGAG-------------AAAATAGTGCTAAACTGAATTATCGAAGTCGTGCTAAATCTATAGATATACGTTTGTTAATC-----A------TTTCTGTCTTTCTTTTTCCATTCTGTTT-ATTT--CTTGTGGTTGTGGTGCTTA-AAAAC--AT---GC-A-------------------TAT----------------------------------------------------------------------ATCTCAAACAAATATGTCGAAATCAAAATAACTAAACATTCCAAA-TGGTAATCCAATCGCAAAACGTTTGC----TTTAAAAAAAAATATA------------AAT-AA----------------ATAAAT-AA-----AAAAAAA------------AAAAT-----CCATGAAAATTGCTGCCAAC----------GTCAAGCAGAACGTTTCGATCGATAGCGTAAGTA----TCTC------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGAATGCCAACGAGGAAGTGCGCGGTCTCAGTCTGCGGCTACAGGAAAATGTAAGTGTTGC----CTAACGCCC--------AAATTCA-----------------------TTAA--TCG-------T-----------C---GCTA-------------TTC---------T-CAG----TTG--TATTGTAACTAAA------AACCGA---AAA-------------------------------------------------------------AAGCCGTGCTAAAGCAATAGTAAGCTGTTTGTTAATA-----A------TTTCTGTCTTTC-TTTTCCATTCTGTTT-ATTT--CTTATGGTTATGGTGCTTA-AAACA--AAAACAA--------------ATATCCCA----------------------------------------------------------------------ATATCTCAAA-----------------------------------AA-CGTTGATCCACATCTTAAACGTTTGCACAATTAAATA-----TAAA------------AAA-A-------------------CAAT-AA-----ACAATAAAT-AAAACAAACAAAACTACAAACGTATAATTTGCT--CAAC----------GCCAAACAGAACGTTTCAATCGATAGCGTAAGTA----TC--------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:53 PM