ID:

dsi_32

 Coordinate:

2r:5309723-5309785 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -22.3

Flybase annnotation

three_prime_UTR [2r_5309532_5309869_+]; utr3 [utr3_plus_1921]

No Repeatable elements found

Sense Strand Reads

GTAAGTAATGTATTTATATGCTCTTTAAGAATGTCTGATAAATGGCTACAAGTGTTGCCTCTCGAGTTCTGTAAGTCTTATCGTCGTAATCAGAAACGATTAGCAATGCTTGTAACTGGTTTATAATTCGAATCCCAAAGTCATCGAAAGTGAAACCAAAAAT

***********************************..((((((...((((((((((((...(((..(((((...................))))).)))...))))))))))))....))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total M023

head

 SRR618934

dsim w501 ovaries

 M025

embryo

 GSM343915

embryo

 SRR553487

NRT_0-2 hours eggs

 O002

Head

 SRR553488

RT_0-2 hours eggs

 M024

male body		 SRR553485

Chicharo_3 day-old ovaries

 SRR553486

Makindu_3 day-old ovaries

 O001

Testis

 SRR902009

testis

 SRR902008

ovaries

 M053

female body

 SRR1275483

Male prepupae
..........................................................................................CAGAAACGATTAGCAATGCTTG................................................... 22 0 1 177.00 177 110 4 33 4 0 2 2 15 1 0 0 4 2 0 0
............................................................................................GAAACGATTAGCAATGCTTGTA................................................. 22 0 1 109.00 109 3 3 1 1 42 2 26 0 13 14 0 0 0 3 1
............................................................................................GAAACGATTAGCAATGCTTGT.................................................. 21 0 1 67.00 67 2 38 1 21 0 4 0 1 0 0 0 0 0 0 0
...........................................................................................AGAAACGATTAGCAATGCTTG................................................... 21 0 1 45.00 45 23 7 5 1 0 2 1 5 0 0 0 1 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTA.......................................................................................... 23 0 1 44.00 44 23 0 6 2 0 0 1 3 5 1 0 2 0 1 0
...........................................................................................AGAAACGATTAGCAATGCTTGT.................................................. 22 0 1 27.00 27 2 9 0 5 0 2 0 0 0 1 6 0 0 2 0
..........................................................................................CAGAAACGATTAGCAATGCTT.................................................... 21 0 1 23.00 23 5 1 0 1 0 10 0 0 1 0 4 1 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGT........................................................................................... 22 0 1 20.00 20 5 6 0 4 0 2 0 2 0 0 0 0 0 1 0
.................................................AAGTGTTGCCTCTCGAGTTCTGT........................................................................................... 23 0 1 17.00 17 2 4 2 6 1 2 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTG................................................... 20 0 1 14.00 14 8 0 2 0 0 2 0 2 0 0 0 0 0 0 0
..........................................................................................CAGAAACGATTAGCAATGC...................................................... 19 0 1 14.00 14 0 0 0 0 0 4 0 0 0 0 10 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCT............................................................................................. 21 0 1 13.00 13 0 2 0 2 2 0 1 0 2 1 2 1 0 0 0
................................................CAAGTGTTGCCTCTCGAGTTCT............................................................................................. 22 0 1 11.00 11 1 0 0 4 0 0 0 1 2 2 0 1 0 0 0
....................................................TGTTGCCTCTCGAGTTCTGTAAG........................................................................................ 23 0 1 11.00 11 6 0 3 0 0 0 0 1 1 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAA............................................... 24 1 1 10.00 10 0 3 0 0 5 0 1 0 0 1 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAGTTCTG............................................................................................ 23 0 1 9.00 9 2 0 3 2 0 0 1 1 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAA......................................................................................... 24 0 1 9.00 9 0 0 7 0 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGTAAA............................................... 23 1 1 9.00 9 0 2 0 0 4 0 3 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTG............................................................................................ 21 0 1 9.00 9 4 0 0 0 0 2 0 1 0 0 2 0 0 0 0
..........................................................................................CAGAAACGATTAGCAATGCTGG................................................... 22 1 1 8.00 8 6 0 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGTA................................................. 21 0 1 8.00 8 0 1 1 0 2 0 3 0 1 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGTAA......................................................................................... 25 0 1 7.00 7 0 0 2 0 1 0 0 0 2 2 0 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTG................................................... 19 0 1 7.00 7 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGAAACGATTAGCAATGC...................................................... 18 0 1 6.00 6 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGT.................................................. 20 0 1 6.00 6 0 5 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGT................................................................................................ 18 0 1 6.00 6 0 0 0 0 0 2 0 0 0 0 4 0 0 0 0
.......................................................................TAAGTCCTATCGTCGTAATCA....................................................................... 21 1 1 5.00 5 0 0 0 1 0 0 0 0 0 1 0 0 2 0 1
..........................................................................................CAGAAACGATTAGCAATGCT..................................................... 20 0 1 5.00 5 0 0 1 0 0 4 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTG............................................................................................ 22 0 1 5.00 5 2 0 0 3 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTT.................................................... 19 0 1 4.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAC............................................... 24 0 1 4.00 4 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAAA........................................................................................ 25 1 1 4.00 4 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAGTTC.............................................................................................. 21 0 1 4.00 4 0 0 2 1 0 0 0 0 0 0 0 0 1 0 0
.....................TGTTTAAGAATGTCTGATAAATGGC..................................................................................................................... 25 1 1 4.00 4 0 0 0 0 0 0 0 0 0 1 0 2 1 0 0
.....................................................................TGTAAGTCTTATCGTCGTAATCAGA..................................................................... 25 0 1 4.00 4 0 0 0 0 0 0 0 0 3 1 0 0 0 0 0
.......................................................................TAAGTCTTATCGTCGTAATC........................................................................ 20 0 1 3.00 3 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAA................................................ 23 0 1 3.00 3 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGTAA................................................ 22 0 1 3.00 3 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0
...........................................................................................AGAAACGATTAGCAATGCTT.................................................... 20 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGCCTCTCGAGTTCTGTAAGTCTTA................................................................................... 25 0 1 2.00 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
................................................................AGTTCTGTAAGTCCTATCGTCGTAATC........................................................................ 27 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
............................................................................................GAAACGATTAGCAATCCTTGTA................................................. 22 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCT............................................................................................. 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
......................................................TTGCCTCTCGAGTTCTGT........................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCTTATCGTCGTAATCAGAAACGATTAG............................................................ 28 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAGT................................................................................................ 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAG................................................................................................. 18 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
................................................CAAGTGTTTCCTCTCGAGTTCT............................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGAAACGATTAGCAATGCTTT................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
............................................................................................GAGACGATTAGCAATGCTTGT.................................................. 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGGA.......................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AGAAACGATTAGCAATGCTTGA.................................................. 22 1 1 2.00 2 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0
............................GAATGTCTGATAAATGGCTAC.................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCCTATCGTCGTAATCAGAAACGATT.............................................................. 26 1 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGG........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GATTAGCAATGCTTG................................................... 15 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTGTTGCCTCTCGAGTTCTGT........................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGAA.......................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................AGTCTTATCGTCGTAATC........................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TGCTGTTTAAGAATGTCTGATAAATGG...................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GAACCGATTAGCAACGCTTGT.................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCTTATCGTCGTAATCAGAAACGATT.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAAAAACGATTAGCAATGCTTG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CTCTCGAGTTCTGTAA......................................................................................... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................TGTTGCCTCTCGAGTTCTGTAA......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAACGATTAGCAATGCTTGTAT................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................AGTTTTGCCTCTCGAGTTCTGTAA......................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................TGTTTAAGAATGTCTGATAAATGGCTA................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTACGAATCCCAAAGTCATCGAAAGG............ 26 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................TCTCGAGTTCTGTAAGTCCT.................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCCTATCGTCGTAATCAGAAAC.................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCCATGCTTGT.................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............TATATGCTGTTTAAGAATGTCTGATAAA......................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................AGAAATGATTAGCAATGCTTGT.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAAGT....................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCTTATCGTCGTAATCAGAAACGA................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGGTTGCCTCTCGAGTTCTGT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAATGATTAGCAATGCTTGT.................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTTCCTCTCGAGTTCTG............................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................TAAGTCTTATCGTCGTAATCA....................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................GTTGCCTCTCGAGTTCTGT........................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAAA.............................................. 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................AAACGATTAGCGATGCTTGT.................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CCCTCTCGAGTTCTGTATGT....................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TGCCTCTCGAGTTCTGTAAGTC...................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGTAAA........................................................................................ 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................GGAACGATTAGCAATGCTTGT.................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGAGTTCTGA........................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TCCTATCGTCGTAATCAGAAACGA................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TCGAGTTCTGTAAGTCTTATCGTCGTA........................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGATTTCTGTA.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAGAAACGATAAGCAATGCTTG................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TAAGTCTTATCGTCGTAATCT....................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................AAGTGTTGCCTCTCGCGTTCTGT........................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGCGTTCTGTA.......................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................GCCTCTCGAGTTCTGTAAGTCTTA................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................CAGAAGCGATTAGCAATGCTTG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAGCGATTAGCAATGCTTGT.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTG................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTTTTGCCTCTCGAGTTCTGTA.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CGGAAACGATTAGCAATGCTTG................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGTGTTGCCTCTCGAGTTCTGTAAG........................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CATAAACGATTAGCAATGCTTG................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TACAAGTGTTGCCTCTCGAGTTCTGTA.......................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................AAGTGCTGCCTCTCGCGGTCTGT........................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................CAAGTGTTGCCTCTCGAGTT............................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................CTCTTTAAGAATGTCTGATAAATGGC..................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................GAAACAATTAGCAATGCTTGT.................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CAAGTTTTGCCTCTCGAGTTCTG............................................................................................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TTGCCTCTCGAGTTCTGTAA......................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................AGTTCTGTAAGTCCTATCGTCGTAA.......................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAGA............................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................CCTCTCGAGTTCTGT........................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAAT........................................................ 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................GAAACGATTAGCAATGCTTGTAAAAA............................................. 26 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................TCTCGAGTTCTGTAAA........................................................................................ 16 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....TAATGTATTTACCTGTTCTTTA........................................................................................................................................ 22 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................CGCGTTCTGTAAGGCT..................................................................................... 16 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................AAGTGTGGCCTATCGA.................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGTCGAATCCCTAAGT...................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATTCATTACATAAATATACGAGAAATTCTTACAGACTATTTACCGATGTTCACAACGGAGAGCTCAAGACATTCAGAATAGCAGCATTAGTCTTTGCTAATCGTTACGAACATTGACCAAATATTAAGCTTAGGGTTTCAGTAGCTTTCACTTTGGTTTTTA

************************************..((((((...((((((((((((...(((..(((((...................))))).)))...))))))))))))....))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 M024

male body		 SRR553486

Makindu_3 day-old ovaries

 SRR553485

Chicharo_3 day-old ovaries

 SRR618934

dsim w501 ovaries

 SRR553488

RT_0-2 hours eggs

 SRR902009

testis
.........................................................GGAGAGCTCAAGACATTCAGA..................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................AAGAGCTCAAGACATTCAGAAT................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................ACAACGGAGAGCTCAAGACAT.......................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................GGAGAGCTCAAGACATACATA..................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0
...............................................................TTCATGTCATTCAGAATAGCA............................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0
..................ACGAGAAATTCTGACA................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 1 0 0
...........................TCTAACAGACTATTTA........................................................................................................................ 16 1 4 0.25 1 0 0 0 0 1 0 0
.......................................................GGGGAGAGCTCAAGACATACA....................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
..................................................................ATGACATTGAGACTAGCAG.............................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 1
.........................AGTCTAACAGACTATTTA........................................................................................................................ 18 2 11 0.09 1 0 0 0 0 1 0 0
.............................................................................AATAGCAGCAGTAGTC...................................................................... 16 1 13 0.08 1 0 0 0 0 0 1 0
............................CTAACAGACTATTTA........................................................................................................................ 15 1 16 0.06 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 2r:5309673-5309835 + dsi_32 confident GTAAGTAATGTATTTATATGCTCTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGTAAGT-------CTTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
droSec2 scaffold_1:2140384-2140546 + dse_112 confident GTAAGTAATGTATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGCAAGT-------CTTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
dm3 chr2R:4498534-4498709 + dme_413 candidate GTAAGTAATGTATTTATATGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTTTTGCGT--TCTGTAAGT-------CTTATCGTCGTAATCAGAGACGATTAGCCAGCCATTCGTGCAATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
droEre2 scaffold_4929:18141568-18141740 - der_1528 -TTAGTAATGTATTTATACGCTATTTAAGATTGTCTGATAAATAGCTA-----CAAGT--GTT-GCCTCTTAGGT--TCTGTAAGT-------CTTATCGTCATAGTTA--ATCGATTAGCCAGCCGTTTGTGGAACGCTTGTAACTGGTTTATAATTTG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAAT
droYak3 2L:17155125-17155293 + -TAAGTAATGTATTTATATGCTATTTAATAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCAAGT--TCTGTAAGT-------CTTATCGTCGTAATCA--AACGATTAGC----CATTTGTGGAATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATTGAAAGTGAAACCAAAAAT
droEug1 scf7180000409183:156737-156911 + -TAAGTAAACTATTTATTTTCTATTTAAGAATGTCTGATAAATGGCTC-----CAAGT--GTT-GCTACTCAAGTGGTCTGTAAGC-------CTTATCGTTGTAATCA--GACGATTAGCTGGCCATTTGTAGAATGCTTGTAACTGGTTTATGATTCG--AATGCCAAAGTCATTGAAATTGAAACCAAAAAT
droBia1 scf7180000302291:2404238-2404417 + -TAAGTAATTTATTTATTTTCTATTTAAGAGTGTCTGATAATTGGCTA-----CAGGT--GTT-GCTTCTCATGT--TCTGTAAGCGAGTTCTGTTATCGTCGTAATCA--GACGGTTAGCCGGCCATTTGTAGAATGCATGTAACTGGTTTATGAGCCG--GATCCCAAAGTCATTGAAAGTGAAACCAAAAAT
droTak1 scf7180000415401:1229823-1229983 - -TAAGTAATGTATTTATTTGCTATTTAAGAATGTCTGATAAATGGCCA--------------------CTCAAGT--TCTGTAAGC-------GTTATCGTCGTAGTCA--AACGATTAGCTGGCCATTTGTTGAATGCCTGTAACTGGTTTACGAGCCG--GATCCAAAAGTCATTGAAAGTGAAACCAAAAAT
droEle1 scf7180000491240:1347757-1347912 + TAATGTACAATATTTATTTGCTGTTCAAGAGCGTCTGATAAATGGCCA-----CAAGTGTGTT-GCTTTTCAAGT--TCTGTAAGC-------TTTATC---------A--GACGATTAGCC-------------ACGCTTGTAACTGGTTTACGAGTCGCAGAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droRho1 scf7180000779971:31249-31421 + -TTAGTAATGTATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAAT--GTT-ACTTTTTAAGT--GCTGTAAAC-------TTTATCGTCTTAATCA--GTCGATCAGCTAGCCGTTAGCAAAATGCTTGTAACAGGTTTATAAGTCA--AAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droFic1 scf7180000453851:1827091-1827258 - -TAAGTAATGTATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GC-TCTCAAGT--TCTGTAAGC-------TTTATCGTCGTAATCG--ATCGATTAGC----CGCTCGTTGAATACTTGTAACTGGTTTATGAGTCG--AAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droKik1 scf7180000302277:360641-360813 + -GTA-TAATGTATTTATTTACAGGCCAAGTGTGTCTGATAACTAGCTG-G---CAAGT--GTT-GCTTCTCAAGT--TCTGTAAGC-------TTTATCGCCGTAATCG--GACGATTAACTGGCCATTAGTTGAATGCTTGTAACTGGTTTACGAGCCA--GAACCCAAAGTCATTGAAAGTGAAACCAAAAAT
droAna3 scaffold_13266:1507605-1507699 - -TAAGTAATCTATTTATTTAGAATTTAAGTGAAACTGATAGAGGGCCA-----GAG-T--GC---------------------------------------------------------------CGTTTAAGGAA----------------------------TTCTTAAAGCAAAGAAAGTGAAACCAAAAAT
droBip1 scf7180000396730:2502009-2502060 - ATAAGTAATCTATTTATTTAGACTCTAAGTGGAACTGATAGATGGCCA-----GAGG------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:5373284-5373458 - -TAAGTAATGTATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCTG----TCGAAATGTCATTGAAAGTGAAACCAA--GT
droPer2 scaffold_2:5578608-5578782 - -TAAGTAATGTATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCTG----TCGAAATGTCATTGAAAGTGAAACCAA--GT
droWil2 scf2_1100000004512:2562412-2562439 + -TAAGTAATCTATTTATTTATTATTTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:4241352-4241382 - -T-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAAACATCCAAAGAAAACCAATAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTAAGTAATGTATTTATATGCTCTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGTAAGT-------CTTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................CAGAAACGATTAGC-------------AATGCTTG.....................................................221177.00177110153300210024424000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTA...................................................221109.00109301302131442263100001
.............................................................................................................GAAACGATTAGC-------------AATGCTTGT....................................................21167.00672110040000382100000
............................................................................................................AGAAACGATTAGC-------------AATGCTTG.....................................................21145.0045235500200017101000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGTA................................................................................................................23144.0044233610051010202000
............................................................................................................AGAAACGATTAGC-------------AATGCTTGT....................................................22127.002720026201009500000
...........................................................................................................CAGAAACGATTAGC-------------AATGCTT......................................................21123.0023500041010001101000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGT.................................................................................................................22120.002052010200006400000
......................................................AAGT--GTT-GCCTCTCGAGT--TCTGT.................................................................................................................23117.001720200200104600000
.............................................................................................................GAAACGATTAGC-------------AATGCTTG.....................................................20114.001482200200000000000
...........................................................................................................CAGAAACGATTAGC-------------AATGC........................................................19114.0014000010400000000000
......................................................AAGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................21113.001300002021212201000
.....................................................CAAGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................22111.001111000022000401000
.........................................................T--GTT-GCCTCTCGAGT--TCTGTAAG..............................................................................................................23111.001161300010000000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTAAA.................................................24110.001000000001513000000
.....................................................CAAGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2319.00921300000010200000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2419.00900700010100000000
..............................................................................................................AAACGATTAGC-------------AATGCTTGTAAA.................................................2319.00900000000432000000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2119.00941002200000000000
..............................................................................................................AAACGATTAGC-------------AATGCTTGTA...................................................2118.00800100010231000000
......................................................AAGT--GTT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2517.00700200022100000000
..............................................................................................................AAACGATTAGC-------------AATGCTTG.....................................................1917.00750000000002000000
............................................................................................................AGAAACGATTAGC-------------AATGC........................................................1816.00600002400000000000
..............................................................................................................AAACGATTAGC-------------AATGCTTGT....................................................2016.00600000000005100000
......................................................AAGT--GTT-GCCTCTCGAGT--......................................................................................................................1816.00600004200000000000
...........................................................................................................CAGAAACGATTAGC-------------AATGCT.......................................................2015.00500100400000000000
......................................................AAGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2215.00520000000000300000
.............................................................................................................GAAACGATTAGC-------------AATGCTT......................................................1914.00400000400000000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTAAC.................................................2414.00400002200000000000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGTAAA..............................................................................................................2514.00400300001000000000
.....................................................CAAGT--GTT-GCCTCTCGAGT--TC....................................................................................................................2114.00400200000000110000
...............................................................................TGTAAGT-------CTTATCGTCGTAATCAGA....................................................................................2514.00400000031000000000
.................................................................................TAAGT-------CTTATCGTCGTAATC.......................................................................................2013.00310000000200000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTAA..................................................2313.00300000000111000000
..............................................................................................................AAACGATTAGC-------------AATGCTTGTAA..................................................2213.00300000001010001000
............................................................................................................AGAAACGATTAGC-------------AATGCTT......................................................2013.00310000000002000000
..............................................................T-GCCTCTCGAGT--TCTGTAAGT-------CTTA..................................................................................................2512.00200000011000000000
.......................................................AGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................2012.00200002000000000000
.............................................................TT-GCCTCTCGAGT--TCTGT.................................................................................................................1812.00200000000002000000
.....................................................................................T-------CTTATCGTCGTAATCAGAAACGATTAG...........................................................................2812.00210000001000000000
.....................................................CAAGT--GTT-GCCTCTCGAGT--......................................................................................................................1912.00200000200000000000
.....................................................CAAGT--GTT-GCCTCTCGAG.........................................................................................................................1812.00200002000000000000
...........................................................................................................CAGAAACGATTAGC-------------AATGCTTT.....................................................2212.00200000000000002000
............................................................................................................AGAAACGATTAGC-------------AATGCTTGA....................................................2212.00200000001100000000
............................GAATGTCTGATAAATGGCTA-----C.............................................................................................................................................2112.00200200000000000000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGG.................................................................................................................2212.00220000000000000000
..................................................................................................................GATTAGC-------------AATGCTTG.....................................................1512.00200000000002000000
...................................................................................AGT-------CTTATCGTCGTAATC.......................................................................................1811.00100100000000000000
.....................................................................................T-------CTTATCGTCGTAATCAGAAACGATT.............................................................................2611.00110000000000000000
..................................................................CTCTCGAGT--TCTGTAA...............................................................................................................1611.00100000000100000000
.........................................................T--GTT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2211.00110000000000000000
..............................................................................................................AAACGATTAGC-------------AATGCTTGTAT..................................................2211.00100000000000001000
......................................................AAGT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2311.00110000000000000000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGTAAGT-------......................................................................................................2611.00110000000000000000
.....................................................................................T-------CTTATCGTCGTAATCAGAAACGA...............................................................................2411.00110000000000000000
.................................................................................TAAGT-------CTTATCGTCGTAATCA......................................................................................2111.00100000001000000000
............................................................GTT-GCCTCTCGAGT--TCTGT.................................................................................................................1911.00100000000001000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTAAAA................................................2511.00100000000010000000
..............................................................T-GCCTCTCGAGT--TCTGTAAGT-------C.....................................................................................................2211.00100000001000000000
......................................................AAGT--GTT-GCCTCTCGAGT--TCTGTAAA..............................................................................................................2611.00100000001000000000
......................................................AAGT--GTT-GCCTCTCGAGT--TCTGA.................................................................................................................2311.00100000000100000000
.....................................................................TCGAGT--TCTGTAAGT-------CTTATCGTCGTA..........................................................................................2711.00100000000100000000
.................................................................................TAAGT-------CTTATCGTCGTAATCT......................................................................................2111.00100000000000100000
................................................................GCCTCTCGAGT--TCTGTAAGT-------CTTA..................................................................................................2411.00100000010000000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTG...................................................2211.00100100000000000000
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGTAAG..............................................................................................................2511.00100000000000100000
..............................................TA-----CAAGT--GTT-GCCTCTCGAGT--TCTGTA................................................................................................................2711.00100000001000000000
.....................................................CAAGT--GTT-GCCTCTCGAGT--T.....................................................................................................................2011.00100000000000001000
....................CTCTTTAAGAATGTCTGATAAATGGC.....................................................................................................................................................2611.00100000000010000000
.............................................................TT-GCCTCTCGAGT--TCTGTAA...............................................................................................................2011.00101000000000000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTAGA.................................................2411.00100100000000000000
.................................................................CCTCTCGAGT--TCTGT.................................................................................................................1520.50100000010000000000
.............................................................................................................GAAACGATTAGC-------------AAT..........................................................1520.50100000000001000000
.............................................................................................................GAAACGATTAGC-------------AATGCTTGTAAAAA...............................................2620.50100000000100000000
...................................................................TCTCGAGT--TCTGTAAA..............................................................................................................1650.20100000010000000000
droSec2
GTAAGTAATGTATTTATATGCTGTTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCGAGT--TCTGCAAGT-------CTTATCGTCGTAATCAGAAACGATTAGC-------------AATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................CAGAAACGATTAGC-------------AATGCTTG.....................................................22147.0047272216
............................................................................................................AGAAACGATTAGC-------------AATGCTTGT....................................................22123.002323144
...........................................................................................................CAGAAACGATTAGC-------------AATGCTT......................................................21119.00193259
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2217.0071024
......................................................AAGT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2316.0060132
............................................................................................................AGAAACGATTAGC-------------AATGCTTG.....................................................2114.0041120
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGCA................................................................................................................2313.0031020
.........................................................T--GTT-GCCTCTCGAGT--TCTGCAAG..............................................................................................................2312.0020020
.............................................................................................................GAAACGATTAGC-------------AATGCTTG.....................................................2011.0010010
.......................................................AGT--GTT-GCCTCTCGAGT--TCTG..................................................................................................................2111.0010010
..............................................................................................................AAACGATTAGC-------------AATGCTTG.....................................................1911.0011000
..............................................................................CTGCAAGT-------CTTATCGTCGTAATC.......................................................................................2311.0010010
.......................................................AGT--GTT-GCCTCTCGAGT--T.....................................................................................................................1811.0011000
...............................................................................................................AACGATTAGC-------------AATGCTTGT....................................................1911.0010010
...........................................................................................................CAGAAACGATTAGC-------------AATGCT.......................................................2011.0010001
....................................................................................................TCGTAATCAGAAACGATTAGC-------------.............................................................2111.0010010
.......................................................AGT--GTT-GCCTCTCGAGT--TCT...................................................................................................................2011.0010001
......................................................................................................................AGC-------------AATGCTTGTAACTGGTTT...........................................2111.0010010
...........................................................................................................CAGAAACGATTAGC-------------AATGCTTGT....................................................2311.0011000
..............................................................................................................AAACGATTAGC-------------AATGCTTGAT...................................................2111.0011000
..............................................................................................................AAACGATTAGC-------------AATGCTTGT....................................................2011.0010001
........................................................GT--GTT-GCCTCTCGAGT--TCTGC.................................................................................................................2111.0011000
...........................................................................................................CAGAAACGATTAGC-------------AATGC........................................................1911.0010010
.......................................................AGT--GTT-GCCTCTCGAGT--TCTGA.................................................................................................................2211.0010001
dm3
GTAAGTAATGTATTTATATGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTTTTGCGT--TCTGTAAGT-------CTTATCGTCGTAATCAGAGACGATTAGCCAGCCATTCGTGCAATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................T--GTT-GCCTTTTGCGT--TCTGTAAGT-------C.....................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000010100000000000000000000000
.........................................................T--GTT-GCCTTTTGCGT--TCTGTAAGT-------CT....................................................................................................2614.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................TTTATAATTCG--AATCCCAAAGTCATC..................2614.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000
...................GCTATTTAAGAATGTCTGATAAAT........................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................TA-----CAAGT--GTT-GCCTTTTGCGT--TCTG..................................................................................................................2513.003000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................CCAAAGTCATCGAAAGTGAAACCAAA...2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CGT--TCTGTAAGT-------CTTATCGTCGTAAT........................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................T--TCTGTAAGT-------CTTATCGTCGTAATC.......................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000
...............................TGTCTGATAAATGGCTA-----CAAGT--GTT-GC.................................................................................................................................2713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GCTTGTAACTGGTTTATAATTCG--AA...............................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TAAGAATGTCTGATAAATGGCTA-----CAAGT--.......................................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TATTTATATGCTATTTAAGAATGTC................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000
.....................................................................TTGCGT--TCTGTAAGT-------CTTAT.................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAATCAGAGACGATTAGCCAGCCA....................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CCTTTTGCGT--TCTGTAAGT-------CTTATCG...............................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................T-GCCTTTTGCGT--TCTGTAAGT-------CTTATCG...............................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................TAATCAGAGACGATTAGCCAGCCATT..................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010
.............................................................TT-GCCTTTTGCGT--TCTGTAAGT-------CT....................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GCTA-----CAAGT--GTT-GCCTTTTGCGT--TCTG..................................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................T--TCTGTAAGT-------CTTATCGTCGTAATCAGA....................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TCCCAAAGTCATCGAAAGTGAAACC......2512.002000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GACGATTAGCCAGCCATTCGTGCAAT..........................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TTTTGCGT--TCTGTAAGT-------CTTATCGTCG............................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TTTTGCGT--TCTGTAAGT-------CTTATCG...............................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................TTTATAATTCG--AATCCCAAAGTCAT...................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................CGTAATCAGAGACGATTAGCCAGCCAT...................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................GACGATTAGCCAGCCATTCGTGCAA...........................................................2511.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................TTATAATTCG--AATCCCAAAGTCATC..................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................CCATTCGTGCAATGCTTGTAACTGG..............................................2511.001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TCCCAAAGTCATCGAAAGTGAAACCAAA...2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TTTTGCGT--TCTGTAAGT-------CTTATCT...............................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTAAGAATGTCTGATAAATGG......................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AATGGCTA-----CAAGT--GTT-GCCTTTTGCGT--TC....................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TATAATTCG--AATCCCAAAGTCATCGAAA..............2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGTAAGT-------CTTATCGTCGTAATCAGA....................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATGCTATTTAAGAATGTCTGATA...........................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GCCTTTTGCGT--TCTGTAAGT-------CTTATC................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGTAAGT-------CTTATCGTCGTAATC.......................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................AATCCCAAAGTCATCGAAAGT............2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................TCAGAGACGATTAGCCAGCCATTCGT...............................................................2611.001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTATATGCTATTTAAGAATGTCTGAT............................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TGCTTGTAACTGGTTTATAATTCG--AAA..............................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATTCG--AATCCCAAAGTCATCGAAAGTGA..........2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AGCCAGCCATTCGTGCAATGC........................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................TA-----CAAGT--GTT-GCCTTTTGCGT--......................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TCG--AATCCCAAAGTCATCGAAAGTGA..........2611.001000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATTTAAGAATGTCTGATA...........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CCCAAAGTCATCGAAAGTGAAACCAAA...2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................TAAGAATGTCTGATAAAT........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CGTGCAATGCTTGTAACTGGTTTATAA.......................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AATGCTTGTAACTGGTTTATAATT.....................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTCG--AATCCCAAAGTCATCGAAAGTGAA.........2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................TA-----CAAGT--GTT-GCCTTTTGCGT--TCTGTAAG..............................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAAGTAATGTATTTATATGCTATT..........................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTCGTGCAATGCTTGTAACTGGTTTA..........................................2611.001000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TAATCAGAGACGATTAGCCAGCCAT...................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TATATGCTATTTAAGAATGTCTGA.............................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TCGTGCAATGCTTGTAACTGG..............................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAAGTCATCGAAAGTGAAACC......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCAGAGACGATTAGCCAGCCATTCGTGC.............................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................TTGTAACTGGTTTATAATTCG--AATCCC...........................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATGCTATTTAAGAATGTCTGAT............................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATCAGAGACGATTAGCCAGCCATTCG................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................AACTGGTTTATAATTCG--A................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................T--TCTGTAAGT-------CTTATCGTCGTAAT........................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGAATGTCTGATAAATGGCTA-----CAAG..........................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................ATCCCAAAGTCATCGAAAGTGAAACC......2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TCGTGCAATGCTTGTAACTGGTTTATA........................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................AGAGACGATTAGCCAGCCAT...................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GCCATTCGTGCAATGCTTGTAACTGGT.............................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCTGATAAATGGCTA-----CAAGT--GTT-GC.................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CTA-----CAAGT--GTT-GCCTTTTGCGT--TC....................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................GT--GTT-GCCTTTTGCGT--TCTGTAAGT-------C.....................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............TATATGCTATTTAAGAATGTCTGATA...........................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TTAGCCAGCCATTCGTGCAATGCT.......................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................TCCCAAAGTCATCGAAAGT............1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TCTGTAAGT-------CTTATCGTCGTAATCAGA....................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTTAAGAATGTCTGATAAATGGCTA-----CAAGT--.......................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AGCCATTCGTGCAATGCTTGTA...................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................ATCAGAGACGATTAGCCAGCCATTCGTGC.............................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................T--TCTGTAAGT-------CTTATCGTCGTAATCAGAA...................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TGCTATTTAAGAATGTCTGATAAAT........................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TCGTGCAATGCTTGTAACTGGTTTA..........................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................TTCGTGCAATGCTTGTAACTGGTT............................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
-TTAGTAATGTATTTATACGCTATTTAAGATTGTCTGATAAATAGCTA-----CAAGT--GTT-GCCTCTTAGGT--TCTGTAAGT-------CTTATCGTCATAGTTA--ATCGATTAGCCAGCCGTTTGTGGAACGCTTGTAACTGGTTTATAATTTG--AATCCCAAAGTCATCGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................................................ATCCCAAAGTCATCGAAAGT............2011.0011000000
..................................................................................AAGT-------CTTATCGTCATAGTTA--ATCGA...............................................................................2511.0010000100
..............................................................................................................................GTTTGTGGAACGCTTGTAACTG...............................................2211.0010000100
.................................TCTGATAAATAGCTA-----CAAGT--GTT-GCC................................................................................................................................2611.0011000000
..................................................................................................CGTCATAGTTA--ATCGATTAGCC.........................................................................2211.0011000000
droYak3
-TAAGTAATGTATTTATATGCTATTTAATAATGTCTGATAAATGGCTA-----CAAGT--GTT-GCCTCTCAAGT--TCTGTAAGT-------CTTATCGTCGTAATCA--AACGATTAGC----CATTTGTGGAATGCTTGTAACTGGTTTATAATTCG--AATCCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................AACGATTAGC----CATTTGTGGAATGCTTGT....................................................2811.00100000010000
................................................................................................................ACGATTAGC----CATTTGTGGAATGCTT......................................................2511.00101000000000
droEug1
-TAAGTAAACTATTTATTTTCTATTTAAGAATGTCTGATAAATGGCTC-----CAAGT--GTT-GCTACTCAAGTGGTCTGTAAGC-------CTTATCGTTGTAATCA--GACGATTAGCTGGCCATTTGTAGAATGCTTGTAACTGGTTTATGATTCG--AATGCCAAAGTCATTGAAATTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droBia1
-TAAGTAATTTATTTATTTTCTATTTAAGAGTGTCTGATAATTGGCTA-----CAGGT--GTT-GCTTCTCATGT--TCTGTAAGCGAGTTCTGTTATCGTCGTAATCA--GACGGTTAGCCGGCCATTTGTAGAATGCATGTAACTGGTTTATGAGCCG--GATCCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droTak1
-TAAGTAATGTATTTATTTGCTATTTAAGAATGTCTGATAAATGGCCA--------------------CTCAAGT--TCTGTAAGC-------GTTATCGTCGTAGTCA--AACGATTAGCTGGCCATTTGTTGAATGCCTGTAACTGGTTTACGAGCCG--GATCCAAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droEle1
TAATGTACAATATTTATTTGCTGTTCAAGAGCGTCTGATAAATGGCCA-----CAAGTGTGTT-GCTTTTCAAGT--TCTGTAAGC-------TTTATC---------A--GACGATTAGCC-------------ACGCTTGTAACTGGTTTACGAGTCGCAGAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droRho1
-TTAGTAATGTATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAAT--GTT-ACTTTTTAAGT--GCTGTAAAC-------TTTATCGTCTTAATCA--GTCGATCAGCTAGCCGTTAGCAAAATGCTTGTAACAGGTTTATAAGTCA--AAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droFic1
-TAAGTAATGTATTTATTTGCTATTTAAGAATGTCTGATAAATGGCTA-----CAAGT--GTT-GC-TCTCAAGT--TCTGTAAGC-------TTTATCGTCGTAATCG--ATCGATTAGC----CGCTCGTTGAATACTTGTAACTGGTTTATGAGTCG--AAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droKik1
-GTA-TAATGTATTTATTTACAGGCCAAGTGTGTCTGATAACTAGCTG-G---CAAGT--GTT-GCTTCTCAAGT--TCTGTAAGC-------TTTATCGCCGTAATCG--GACGATTAACTGGCCATTAGTTGAATGCTTGTAACTGGTTTACGAGCCA--GAACCCAAAGTCATTGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotal
No Reads
droAna3
-TAAGTAATCTATTTATTTAGAATTTAAGTGAAACTGATAGAGGGCCA-----GAG-T--GC---------------------------------------------------------------CGTTTAAGGAA----------------------------TTCTTAAAGCAAAGAAAGTGAAACCAAAAATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................GTGAAACTGATAGAGGGC.....................................................................................................................................................1811.001000010
.........................................................................................................................................................................AAAGCAAAGAAAGTGACC........18200.051010000
droBip1
ATAAGTAATCTATTTATTTAGACTCTAAGTGGAACTGATAGATGGCCA-----GAGG------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
-TAAGTAATGTATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCTG----TCGAAATGTCATTGAAAGTGAAACCAA--GTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................................................................TTGCTGTTGTGCTG----TCGAAATGTCAT...................2612.0020000000020
..................................................................................................CGCGATAATCG--AGCGATTA............................................................................1911.0010100000000
..........................................................................................................................................GTTGTAACTTGCTGTTGTGC.....................................2011.0010100000000
.......................................................................................................................................ATGGTTGTAACTTGCTGTTG........................................2011.0010000000100
droPer2
-TAAGTAATGTATTTATTTACTATTTAAGTATGTCTGTTATATGGCCTGGCCCCTAGA--GTTCGCTGCTTGAGT--TCAGTATGC-------TTAATCGCGATAATCG--AGCGATTAGGTTTCCATTAACCGAATGGTTGTAACTTGCTGTTGTGCTG----TCGAAATGTCATTGAAAGTGAAACCAA--GTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.............................................................................................................................................GTAACTTGCTGTTGTGCTG----T..............................2012.002200000
.........................................................................................................................................GGTTGTAACTTGCTGTTGTGCTG----T..............................2411.001100000
droWil2
-TAAGTAATCTATTTATTTATTATTTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droGri2
-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAAACATCCAAAGAAAACCAATAATTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 10:22 PM