ID:

dsi_3190

Coordinate:

3l:8225364-8225513 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATATATTTGGAGTTTTCTCCTCAGCTTTTCAAGCTGTTTAAACATATATGATTGTGAACTCCCTTCCCAAACTTTTTATCAGAATTGTCTTTTTGTGTTACATATGAATTCTCCTAGATAATCTTTAGAACTCCGATTCAAACAAAGAATTTATTTGTACCAAATAGCACATACTGACTTTTTGGCCTTTCCCTTTGCAGCACATTGGTTCCCTGGAAGATCTTCCGGCAGGAGCTGAACAAAGTACACC ************************************************.(((((((........(((((.......((((...(((((.((((.((.(((.(((((((((.......((((...........)))).......))))))))).))))))))).)).)))..))))...)))))........)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
.........................................................................................................................................................................................................................AGATCTTCCGGCAGGAGC...............	18	0	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................ACATTGGTTCCCTGGAAGATC............................	21	0	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................CTTCCGGCAGGAGCTGAACAAAGTACACC	29	0	1	1.00	1	0	0	1	0
..................................................................................................................................................................................TTTTTCCCCTTTCCCCTTGCAG..................................................	22	3	13	0.08	1	0	0	0	1
........................................AAAGTAGATGATTGTGAACT..............................................................................................................................................................................................	20	3	14	0.07	1	0	0	0	1
............TTTTCTCCTCGGCTTT..............................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	1

Anti-sense strand reads

TATATAAACCTCAAAAGAGGAGTCGAAAAGTTCGACAAATTTGTATATACTAACACTTGAGGGAAGGGTTTGAAAAATAGTCTTAACAGAAAAACACAATGTATACTTAAGAGGATCTATTAGAAATCTTGAGGCTAAGTTTGTTTCTTAAATAAACATGGTTTATCGTGTATGACTGAAAAACCGGAAAGGGAAACGTCGTGTAACCAAGGGACCTTCTAGAAGGCCGTCCTCGACTTGTTTCATGTGG ************************************************.(((((((........(((((.......((((...(((((.((((.((.(((.(((((((((.......((((...........)))).......))))))))).))))))))).)).)))..))))...)))))........)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	M025 embryo	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries
...........................................................................................................................CAATCTCGAGGCTAAGTT.............................................................................................................	18	2	8	2.25	18	16	0	2	0	0	0	0
...........................................................................................................................AAATCTCGAGGCTAAGTT.............................................................................................................	18	1	2	1.00	2	0	2	0	0	0	0	0
..............................................................................................................................................................................................GGGAAACGTCGTGTAGGCAAT.......................................	21	3	4	0.25	1	0	0	0	1	0	0	0
........................................................................................................................TAGAAATCTTGAGTCTAG................................................................................................................	18	2	8	0.13	1	0	0	1	0	0	0	0
............................................................................................................................AAGTTTGAGGCTAAGCTTGT..........................................................................................................	20	3	10	0.10	1	0	0	0	0	0	1	0
.......................................................................................................................TTAGAAATCTTGGGCC...................................................................................................................	16	2	18	0.06	1	0	0	0	0	1	0	0
.............................................................................................................................................................ATGCTATATCGTGTATGGC..........................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................ACCTCCAAGATGGCCGTC...................	18	3	20	0.05	1	0	1	0	0	0	0	0
......................................................................................................ACACTTAAGAGGATC.....................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0

Generated: 04/24/2015 at 10:46 AM