ID:dsi_3186 |
Coordinate:3r:10653723-10653872 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -7.9 | -7.7 | -7.5 | -7.5 |
 |
 |
 |
 |
CDS [3r_10653887_10653991_+]; five_prime_UTR [3r_10653022_10653886_+]; exon [3r_10653022_10653991_+]
No Repeatable elements found
| ########################################################################################################################################################################################################################################################## GCTGCGCTCCCCACTTGGCACCACTCAAGTTGTCTTTTGTTAGGCAGCTCGTCTCGATTTTCGCACTCTTCTGCGAAATGGGAGCCGGGCGTTGATAACAGCCGGTCACCAACTGGCGATCGCAGCTTATGTATATGTTTACATGTTTACCCGGACACTCGATCTCTAAACGAGCTGTATTTCTGTGAATACCTTACCAGGCTCCCGATTCGCCATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAACCA ***********************************************************************************************************.......((...(((.((..((((((......))))))............)))))..))************************************************************************************ |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
O002 Head |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
M025 embryo |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................GGAGCCGGGCGTGGA........................................................................................................................................................... | 15 | 1 | 20 | 4.40 | 88 | 0 | 0 | 0 | 48 | 0 | 39 | 1 | 0 | 0 |
| .................................................................................................................................................TTTACCCGGACACTCGATCTC.................................................................................... | 21 | 0 | 1 | 4.00 | 4 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................ACCAACTGGCGATCGCAGCTT.......................................................................................................................... | 21 | 0 | 1 | 3.00 | 3 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................................................................TTACCCGGACACTCGATCTCT................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................TGGCGATCGCAGCTTATGTAT.................................................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................TTACATGTTTACCCGGACACT........................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................GCAGCTCGTCTCGATTTTCGC.......................................................................................................................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................TCCCCGTGAGATCCTCGAG...... | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................TGAGTCCCCGTCCCCGTGAGA.............. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................ACCAACTGGCGATCGCAGC............................................................................................................................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................TCACCAACTGGCGATCGCAGC............................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................CGATTCGCCATGAGTCCCCG......................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................TTCTGCGAAATGGGAGCCGGG................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................................................CGTGAGATCCTCGAGGAAC.. | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................................................CGTGAGATCCTCGAGGAACCA | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................CCCGGACACTCGATCTCTAAACGAGC........................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...............................................................CACTCTTCTGCGAAATGGGAG...................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................TCTGCGAAATGGGAGCCGGGAC............................................................................................................................................................... | 22 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................ACGAGCTGTATTTCTGTGAATAA.......................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................................................................TCCCCGTCCCCGTGAGATCCTCG........ | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................TCTAAACGAGCTGTATTTCTGTGAA............................................................. | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................AGCTCGTCTCGATTTTCGCAC........................................................................................................................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................TCTGCGAAATGGGAGCCGGGCG............................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................TGTTTACATGTTTACCCGGAC.............................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................AACGAGCTGTATTTCTGTGAATACCT........................................................ | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................AGCAGCTCGTCTCGATTTTCGC.......................................................................................................................................................................................... | 22 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................CAACTGGCGATCGCAGCTTATG....................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................TGTCTTTTGTTAGGCAGCTCGTCTCGA................................................................................................................................................................................................. | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ......................................................................................................................................ATGTTTACATGTTTACCCG................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................ACCCGGACACTCGATCTC.................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................CTAAACGAGCTGTATTTCTGT................................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................ACTTCTGCAAAATGGAAGCC.................................................................................................................................................................... | 20 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................GATAGGCAGCTGGTCT.................................................................................................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| ........CCCCACCTGGCACCA................................................................................................................................................................................................................................... | 15 | 1 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......CTCCACACCTGGCACCA................................................................................................................................................................................................................................... | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................CCGGGCGTTGGTACCA...................................................................................................................................................... | 16 | 2 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................TAACATCCGGTCTCCA........................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
|
CGACGCGAGGGGTGAACCGTGGTGAGTTCAACAGAAAACAATCCGTCGAGCAGAGCTAAAAGCGTGAGAAGACGCTTTACCCTCGGCCCGCAACTATTGTCGGCCAGTGGTTGACCGCTAGCGTCGAATACATATACAAATGTACAAATGGGCCTGTGAGCTAGAGATTTGCTCGACATAAAGACACTTATGGAATGGTCCGAGGGCTAAGCGGTACTCAGGGGCAGGGGCACTCTAGGAGCTCCTTGGT
************************************************************************************.......((...(((.((..((((((......))))))............)))))..))*********************************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
SRR553487 NRT_0-2 hours eggs |
M024 male body |
O002 Head |
SRR553488 RT_0-2 hours eggs |
M053 female body |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
M025 embryo |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................AAGAGGTACTCAGGGG.......................... | 16 | 1 | 2 | 8.50 | 17 | 0 | 10 | 0 | 0 | 3 | 0 | 3 | 0 | 1 | 0 | 0 |
| .........................................TCCGTCGAGCAGAGCTAAAAG............................................................................................................................................................................................ | 21 | 0 | 1 | 5.00 | 5 | 4 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................CAGTGGTTGACCGCTAGCGTC............................................................................................................................. | 21 | 0 | 1 | 4.00 | 4 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................TCCGTCGAGCAGAGCTAAAA............................................................................................................................................................................................. | 20 | 0 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................TTGGGCCTGTGAGCTAGAGA................................................................................... | 20 | 1 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................AAGAGGTACTCAGGGGGA........................ | 18 | 2 | 5 | 1.80 | 9 | 0 | 5 | 0 | 0 | 2 | 0 | 1 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................AAGAGGTACTCAGGGGG......................... | 17 | 2 | 8 | 1.38 | 11 | 0 | 9 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| .......................................................................................................................AGCGTCGAATACATATACAAA.............................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................GTACAAATGGGCCTGTGAGCT........................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................GGGGCACTCTAGGAGCTC...... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................ACCGCTAGCGTCGAATACATA.................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................ATGGGCCTGTGAGCTAGAGAT.................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................CCGAGGGCTAAGCGGTACTCAG............................. | 22 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................CAATCCGTCGAGCAGAGCTAAA.............................................................................................................................................................................................. | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................ACAGAAAACAATCCGTCGAGC....................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................GAGTTCAACAGAAAACAA................................................................................................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................GGTCCGAGGGCTAAGCGGTAC................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................CTATTGTCGGCCAGTGGTT.......................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................TCCGTCGAGCAGAGCTAAA.............................................................................................................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................CCGTCGAGCAGAGCTAAAAGC........................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................TCGAGCAGAGCTAAAAGCGT......................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................GGGGCAGGGGCACTCTAGGAG......... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................CGTCGAGCAGAGCTAAAAGCG.......................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................CCCGTCGAGCAGAGCTAAAA............................................................................................................................................................................................. | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................AGAGGTACTCAGGGG.......................... | 15 | 1 | 9 | 0.67 | 6 | 0 | 3 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................CTAAGGGGCAGGGGCA.................. | 16 | 1 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................ATTGTCGGCCAAAGGTTG......................................................................................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................AAATGGGCCTGGGAGTCAGA..................................................................................... | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...AGGGAGGGGTGAACCGTGCT................................................................................................................................................................................................................................... | 20 | 3 | 11 | 0.27 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................AAGAGGTACTCAGGGGGAA....................... | 19 | 3 | 19 | 0.21 | 4 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................TGGTTGATGGCTAGCGTC............................................................................................................................. | 18 | 2 | 5 | 0.20 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................CAAGTCTCCAAATGGGCCTG.............................................................................................. | 20 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ............................................................................................................................................TGTTCTAATGGGCCTGTAA........................................................................................... | 19 | 3 | 11 | 0.18 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................CCGTCGAGGAGAGTTTAAAG............................................................................................................................................................................................ | 20 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................TTATGAGATGGTCCGA............................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................GCGCGGGGGCACTCT.............. | 15 | 2 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................GCGCGAGATTTGGTCGAC......................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................CGGCCCTTGCTTGACCGCT................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................AGCTTCACCCTTGGCCCGC............................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .........................................................................................GCAACTAGCGCCGGCCAG............................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................CCAAATGGGCCTGTCA........................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......AGGGATGGACCGTGGT................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/24/2015 at 10:45 AM