ID:

dsi_3170

 Coordinate:

3l:3248873-3249022 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.2 -45.5 -45.5

Flybase annnotation

exon [3l_3248705_3248872_+]; CDS [3l_3248705_3248872_+]; intron [3l_3248873_3250406_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATGCCACATGAATGGTGGCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGCTGGAAGACCAAAGACCGAAGACCGAAGACTGGAGAGTGTAGAGCTCTCTACGCATTTGTAGAAAGTGCAAGTCGCGCCTGCGCAGCTGCGCGTGGCCATTGCGTGCTTTGTTTGCCGTATGAGGTGCACGGATCTGGCTCTTGG
**************************************************........((((((.......)))))).(((..((..(((.((((((.((.(((..(((....)))..)))((.....)).....((((((((.....)))))))).((((((.....))))))..)).)))))).)))..)).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................CAACAAGAGTCTGGCATT..................................................................................................................................................................................................................... 18 0 1 4.00 4 0 2 0 0 2 0 0 0 0 0 0
................................................................TTGACTGGTGGGGAGTGA........................................................................................................................................................................ 18 3 20 3.60 72 0 0 72 0 0 0 0 0 0 0 0
..............AATGTCAACAAGAGTCTGGC........................................................................................................................................................................................................................ 20 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0 0
.................GTCAACAAGAGTCTGGCATTCT................................................................................................................................................................................................................... 22 0 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0
................TGTCAACAAGAGTCTGGC........................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............AAATGTCAACAAGAGTCTGGC........................................................................................................................................................................................................................ 21 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0
...........................GTCTGGCATTCTTGCACACCAAGGTC..................................................................................................................................................................................................... 26 1 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0
................................................................TTGACTGGTGGGGAGTGAA....................................................................................................................................................................... 19 3 20 1.10 22 0 0 22 0 0 0 0 0 0 0 0
............AAAATGTCAACAAGAGTCTGGC........................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....AAAATCGAAAATGTCAACAAGA............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................GGCTGGCATTCTTGCACACCAAG........................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...............ATGTCAACAAGAGTCTGGC........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..CATAAAATCGAAAATGTCAACAAGA............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................ACCGAAGACTGGAGAGTGTAGAGCT................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..CATAAAATTGAAAATGTCAAC................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TGTAGAAAGTGCAAGTCC...................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........CGAAAATGTCAACAAGAGTCTGG......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.CCATAAAATCGAAAATGTCAACAAGAGT............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.CCATAAAATCGAAAATGTC...................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................TGGAAGACCAGAGACCAAAGACT......................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................TGACTGGTGGGGAGTGAA....................................................................................................................................................................... 18 2 4 0.50 2 0 0 2 0 0 0 0 0 0 0 0
................................................................ATGACTGGTGGGGAGTGAA....................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................GGCTAGTGACTGGAGTGAAG............................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................TGACTGGTGGGGAGTGA........................................................................................................................................................................ 17 2 15 0.47 7 0 0 7 0 0 0 0 0 0 0 0
...........................................................................................................................AAGACCGATGACTGGGGT............................................................................................................. 18 3 20 0.25 5 4 0 0 0 1 0 0 0 0 0 0
................................................................ATGACTGGTGGGGAGTG......................................................................................................................................................................... 17 2 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
..................................................................GACTGGTGGGGAGTGAA....................................................................................................................................................................... 17 2 16 0.19 3 0 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................TATAGAAAGTGCAAGTGGCGA................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................ACCACATGACTGGTGGCG............................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................TGGAGTTGCTGGAAGAACAA..................................................................................................................................... 20 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................AGTTGATGGAAGACC....................................................................................................................................... 15 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................TCAGTTGATGGAAGACCGAA.................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCTTTCTTTGCCGTA......................... 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................CTGATGGAAGACCAAAG................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................CAAACTCCGAATACCGAAGA.................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGGAGACTGTAGATCT................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................GCCCGGCTGCGCGTCGCCA.............................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................TGGAGAGTGTGGAGC.................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................GGAGACTGTAGATCTC.................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................CGTTGCAGTTGGCGGAA........................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................AGTGTAGAGCTCTCGC.............................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGGTATTTTAGCTTTTACAGTTGTTCTCAGACCGTAAGAACGTGTGGTTCCACTCTATACGGTGTACTTACCACCGCTCACTTCCCTCACTTCCGCAACGTCAACGACCTTCTGGTTTCTGGCTTCTGGCTTCTGACCTCTCACATCTCGAGAGATGCGTAAACATCTTTCACGTTCAGCGCGGACGCGTCGACGCGCACCGGTAACGCACGAAACAAACGGCATACTCCACGTGCCTAGACCGAGAACC
**************************************************........((((((.......)))))).(((..((..(((.((((((.((.(((..(((....)))..)))((.....)).....((((((((.....)))))))).((((((.....))))))..)).)))))).)))..)).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................TCTAGAGATGCGTAAAG...................................................................................... 17 2 17 0.94 16 8 4 1 2 1
...................................................................................................................................................TCTAGAGATGCGTAAA....................................................................................... 16 1 3 0.33 1 0 1 0 0 0
...............AACAGTTGTTCTCTGACGGTA...................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0
..................................................................................................................................................GTCTAGAGATGCGTAAA....................................................................................... 17 2 20 0.20 4 1 2 1 0 0
..................................................................................................................................................GTCTAGAGATGCGTAA........................................................................................ 16 2 20 0.20 4 1 2 0 0 1
....................................................................................................................................................CTAGAGATGCGTAAA....................................................................................... 15 1 7 0.14 1 0 0 1 0 0
.............................GACAGTAAGAACGGATGGT.......................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
................................................................................................................................................CCCCCGAGAGATGCGTAA........................................................................................ 18 3 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:3248823-3249072 + dsi_3170 TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATG---------------------CCACAT------------------------------------------------------------GA-ATG-GTG---GCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACCGAAGAC-------CGA----AGACTG--GAGAG----TG-------TAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCTCTTGG
droSec2 scaffold_2:3343533-3343789 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATG---------------------CCACAT------------------------------------------------------------GA-ATG-GTG---GCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGACCA--------AAGACCGAAGACTGAAGAC-------CGA----AGACTG--GAGAG----TG-------TAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGGTG------TACGG------------------------ATCT---------G----------------------------------------------GCTCTTGG
dm3 chr3L:3352083-3352332 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATG---------------------CCACAT------------------------------------------------------------AA-ATG-GCG---GCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACCGAAGAC-------TGA----AGACTG--GAGAG----TG-------TAA---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCTGTTGG
droEre2 scaffold_4784:6042091-6042331 + der_742 TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATA---------------------CCACAT------------------------------------------------------------AA-ATG-GTT---GGGAGTGAAGGGAG---------TGCAGTGGC-----------------------------------------------------------------------TG------------GAAGAC---------------CGAAGACTGAAGAC-------TAA----AGACTG--GAGAG----TG-------TGG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTATGTTTGCCGTATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCTCTTGG
droYak3 3L:3899115-3899386 + dya_700 TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATA---------------------CCGCGT------------------------------------------------------------AA-ATG-GTT---GGGAGTGAAGGGAGTGAA-----TGCAGTTGC-----------------------------------------------------------------------TG------------GAAGACCAA-AGACTGAAGACTGAAGACTGAAGACTAAAGACTGA----AGACCAAAGAGAG----TG-------GGG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTATGTTTGCCGTATGAGGTG------CACGG------------------------ATCT-ATGT----G----------------------------------------------GCTCTTGG
droEug1 scf7180000409466:1080351-1080593 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAGATG--------TA-----------CCATAT------------------------------------------------------------AAAATG-G---------------------AAGGGGCTGCAGTTGG-----------------------------------------------------------------------TGGTTGGTAG--TGGAAGGCTA--------AAGACCGAACACCAAAGAC-------TGG----AGAGTG--GAGAG----TG-------ACG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGCAC------CACGG------------------------ATCT----------------------------------------------------------------
droBia1 scf7180000302428:2719616-2719859 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATACACCATATACC-----ATATATACCATAT------------------------------------------------------------AATATG-GGT---GG--ATGAAG------CAGGGACTGCAGTTGG-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACC--------------GA----AGACTG--GAGAG----TG-------GAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAGCAC------CGCGG------------------------ATCT---------G------------------------------------------------------
droTak1 scf7180000415855:146975-147203 - TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAGATA--------TA-----------CCATAT------------------------------------------------------------AA-ATA------------------------A---GCTGCAGTTTGAC---------------------------------------------------------------------T-------------GAAGAC---------------TAAAGACTGAATAG-------TGG----AGAGTG--GAGAG----TGAAGAGCGGAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAGTAG-AGCTCCA--------------------------------------------------------------------------------------------TGA
droEle1 scf7180000491249:1888903-1889154 - TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATAAAAT------------------------------------------------------------------------------------------------------------------------GCACGTAT-ATGTATATATTGGTGGGG-------------AGTTGT---------------------------------TG-------------AAGACAG--------AAGACTGAAGACAGAGGAC-------AGA----AGACTG--GAGAG----TG-------GAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGTACGAGCTCCGCGG------------------------CTCC---------G----------------------------------------------GCTTTTGG
droRho1 scf7180000777856:10245-10470 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATAGTGTGTTGT-----ATATA------------TA------TATATGTATATGG-TGGATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGAC-------TGG----AGAGTG--GAGAG----TG-------GAT---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGGCTTATGAGCTC------CGCGG------------------------ATCT---------A----------------------------------------------GCTTTTGG
droFic1 scf7180000454105:1680928-1681163 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATAGCATTTT--C-----------CCATTT--------------------------------------------------------------------------------GTGT--------------------------GTGTGTTG-TGTTG-------------TGTTGTGT--------------------------------------------G---------------------TGGGGACTGGGGAG-------TGA----AGACTG--GTAAG----AG-------GAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGCAG------CGCGG------------------------ATCT---------G----------------------------------------------GCTTTCGG
droKik1 scf7180000302391:474560-474794 + TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGACATGT-G---T--------------CCA----------------------------------------------------------------------------------------------------------GC--------------------AGG-AGGAGCA-ATCC-------GAGGGAGAGTGGATTGGAGTGGAGTGGAGTCTTGGGAGACTGGAAGGCT----------------------GA------TAGGCTG----------G--GAGAGTGAGTG-------GCA---------AG--CT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAG----------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:10093587-10093814 - TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAG-------------------------------------------------------------------------------------------------------------------------------GCAGTTCCCC------------------CGAGGAGTCC----CA---AGTGGAGAGT--------------------------------------------------------------AATGGTGAT-------TGG----ACAGTG--GAGAG----TGCTGGGGAGAG---------AGCTCTACTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCTCATGAGCTG------AGCTG------------------------AGCT---------G----------------------------------------------AGCCCGGC
droBip1 scf7180000396569:1261264-1261474 + TCCACAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAGGCAG-T---T--C-----------CCAGAG------------------------------------------------------------GA-GTG-------GCAAGTGGAGA--------------------------------------------------------------------GA-------------------------------------------------------------GAGTGGAGTT-------TGG----AGTGTG--GAGAG----TG--GGG--AAG---------AGAGCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CG-TTGCGTGCTTTGTGTGGCTCATGAGCCA------------------------------------------------G----------------------------------------------GCTGT---
dp5 XR_group8:5431838-5432117 - dps_3332 TACATAAAATTGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACAAAGGTGAGAGACG--------CA------------CACACGGTAAAGAGAGAGATAGACAGATGGACGGACACTCTCCAAAAAAAAAAAAAAAGAAAAGAGA-GTG-GCGACAGCGAGTGGAGGGAGT---------GCAGA-------------------------------------------------------------------------------------------------------------------------------------------------GGGAG----TG-------GAGT--------GGATCT-TTACGCATTTGTAGAAAGTGCAAGTCTGCGGCTG-CGCAGCCAAGCGCGTGGCT-----CG-TTGCGTGCCTTGTTTGCCGTATGAGCCG------TATG-------------------------AGCGGGAGG----G----------------------------------------------ACAGATGG
droPer2 scaffold_38:254413-254722 + TACATAAAATTGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACAAAGGTGAGAGACG--------CA------------CACACGGGAAAGAGAGGGATAGACAGATGGACGGACACTCTCAAAAAAAA---------AAAAGAGA-GTG-GCGACAGCAAGTGGAGGGAGTGCAGGGAGTGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------GGGAG----TG-------GAGT--------GGATCT-TTACGCATTTGTAGAAAGTGCAAGTCTGCGGCTG-CGCAGCCAAGCGCGTGGCT-----CG-TTGCGTGCCTTGTTTGCCGTATGAGCGG------GAGGG------------------------ACAG-ATGGTGGTGGTCTCCCCCGGATCCCCTCTGGCCCATCCACCA--------------------C
droWil2 scf2_1100000004768:1052315-1052555 - TACATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGTGTTT--------TCCCAAATA------------GAAA-----------------------------------------------------------GA---------------------------GATGCACATACCCTGAATAAAGAG-GGTGG-------------AGTG---G--------------------------------------------GCG------A-GGAGA----------------------GAG----AAAGA--------GAGAGATAGAG---------A---------AG--GC-CTACGCATGTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGCCATGGCCA-TTGCGTGCTTTGTTTGTCTTATGAGATT----------G------------------------TGAT---------G----------------------------------------------ATGATCGG
droVir3 scaffold_13049:5237021-5237219 + TACATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTACG-------------------------------T------------------------------------------------------------AA-GAG-GGA----------------------------------------------------GA----------------A---A--------------------------------------------GGG------A--GGGA--------------GA------GAG----AGAGA--------GAGAGAGAGAG-------AAA-A-------AG--GC-CTACGCATTTGTAGAAAGTGCAAGTC-TC--TTGAGGCAGCT--GCGCGTGGA------CG-TTGCGTGCTTTGTTTGCCACATGAGCTG------CACAG--------------------------CG---------A----------------------------------------------GAGTTATG
droMoj3 scaffold_6680:3603732-3603955 + TACATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTACG-------------------------------TGTGAAA-----------------------------------------------------------GA---------------------------GAT--------------------G-TGTGACAGAGA----------G---T--------------------------------------------GCG------ACAGAAA----------------------GAG----AAAGA--------GAGAGAGAGAG-------ATA-A-------AG--GC-CTACGCATTTGTAGAAAGTGCAAGTC-TC--TTGAGGCAGCT--GCGCGTGGCC-----TG-TTGCGTGCTTTGTTTGCCACATGAGTGA-------GC-----------------------CA--TC-------------------------------------------ATACAAAAAAAGTCACT-TTAG
droGri2 scaffold_15110:13746721-13746966 - TACACAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTAAA-CA----------------------------T------------------------------------------------------------AA-GT--------------------------------GCA-----------------------ACAGAGAGACACTTATCG---A--------------------------------------------GCG------A--GAGA----------------------GAG----AAAGA----GG--GAGAG--AGAG------AGAGAGTTTGCTTAG--GC-CTACGCATTTGTAGAAAGTGCAAGTC-TTGA----AGCAGCT--GCGCGTAGCC-----CGTTTGCGTGCTTTGTTTGCCACATGAGTTA------AAAAAAAACGAAGGAGAGTTATAAGCCGTGTCT---------A----------------------------------------------CATAC--A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATG---------------------CCACAT------------------------------------------------------------GA-ATG-GTG---GCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACCGAAGAC-------CGA----AGACTG--GAGAG----TG-------TAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCTCTTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................CAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.00420200000000000000
..............AATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00301110000000000000
.................GTCAACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00302001000000000000
................TGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
.............AAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00210100000000000000
...........................GTCTGGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00201000000000100000
............AAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....AAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...............ATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..CATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
......................................................................................................................................................................................................................................................................................................................AC-------CGA----AGACTG--GAGAG----TG-------TAG---------AGCT....................................................................................................................................................................................................2511.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TGTAGAAAGTGCAAGTC-C.....................................................................................................................................................................1811.00100100000000000000
..........CGAAAATGTCAACAAGAGTCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.CCATAAAATCGAAAATGTCAACAAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.CCATAAAATCGAAAATGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................AG----TG-------TAG---------AGCTCT-CGC..............................................................................................................................................................................................16200.05100000000001000000
droSec2
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATG---------------------CCACAT------------------------------------------------------------GA-ATG-GTG---GCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGACCA--------AAGACCGAAGACTGAAGAC-------CGA----AGACTG--GAGAG----TG-------TAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGGTG------TACGG------------------------ATCT---------G----------------------------------------------GCTCTTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........ATCGAAAATGTCAACAAGAGTCTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..............AATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...ATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.................GTCAACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................TCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.................GTCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................GGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...........................GTCTGGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
dm3
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATG---------------------CCACAT------------------------------------------------------------AA-ATG-GCG---GCGAGTGAAGGGAGTGAAGGCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACCGAAGAC-------TGA----AGACTG--GAGAG----TG-------TAA---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCTGTTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........CGAAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................AGAC---------------CAAAGACCGAAGAC-------TGA----AG............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................GCGTTGCAGTTGC-----------------------------------------------------------------------TG------------GAAGAC---------------CAAA......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................AACAAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAAATCGAAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTGGCATTCTTGCACACCAAGGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATTCTTGCACACCAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ATCGAAAATGTCAACAAGAGTCTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................................................................................................................................................................................................................................................................................CCGAAGAC-------TGA----AGACTG--GAGA..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCT.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGAAAATGTCAACAAGAGTCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTGC-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACCGAAGAC-------.....................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CCATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AGTGAAGGGAGTGAAGG................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GACCGAAGAC-------TGA----AGACTG--GA....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GAGTGAAGGGAGTGAAGGCGTTGCA.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............AATGTCAACAAGAGTCTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................TCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCT--GCGCGTGGC------CA-TTGCGTGC...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AGACCGAAGAC-------TGA----AGACTG--GA....................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................CAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
................TGTCAACAAGAGTCTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.......................AAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.....................ACAAGAGTCTGGCATTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AC---------------CAAAGACCGAAGAC-------TG...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTCTGGCATTCTTGCACACCAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATA---------------------CCACAT------------------------------------------------------------AA-ATG-GTT---GGGAGTGAAGGGAG---------TGCAGTGGC-----------------------------------------------------------------------TG------------GAAGAC---------------CGAAGACTGAAGAC-------TAA----AGACTG--GAGAG----TG-------TGG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTATGTTTGCCGTATGAGGTG------CACGG------------------------ATCT---------G----------------------------------------------GCTCTTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...ATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000110
...........................GTCTGGCATTCTTGCACACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0021010000
.CCATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0022000000
..CATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................AACAAGAGTCTGGCATTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...............ATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................AGACTG--GAGAG----TG-------TGG---------AGC.....................................................................................................................................................................................................1911.0010100000
.............................CTGGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
......................................................GATATA---------------------CCACAT------------------------------------------------------------AA-ATG-GTT---GGGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..........................AGTCTGGCATTCTTGCACACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.CCATAAAATCGAAAATGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.......................AAGAGTCTGGCATTCTTGCACACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.........................GAGTCTGGCATTCTTGCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
...................CAACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
droYak3
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATA---------------------CCGCGT------------------------------------------------------------AA-ATG-GTT---GGGAGTGAAGGGAGTGAA-----TGCAGTTGC-----------------------------------------------------------------------TG------------GAAGACCAA-AGACTGAAGACTGAAGACTGAAGACTAAAGACTGA----AGACCAAAGAGAG----TG-------GGG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTATGTTTGCCGTATGAGGTG------CACGG------------------------ATCT-ATGT----G----------------------------------------------GCTCTTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................GTCTGGCATTCTTGCACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300300000000
...........................GTCTGGCATTCTTGCACACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
............................TCTGGCATTCTTGCACACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00202000000000
..CATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.........................GAGTCTGGCATTCTTGCACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...........................GTCTGGCATTCTTGCACACCAAGGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000
...............................GGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...........................GTCTGGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................GTCTGGCATTCTTGCACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................GTCTGGCATTCTTGCACACCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................GTCAACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
............................TCTGGCATTCTTGCACACCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................AGTCTGGCATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000100000
.........................GAGTCTGGCATTCTTGCACACCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....TAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................CAACAAGAGTCTGGCATTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...................CAACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................ATTCTTGCACACCAAGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........TCGAAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
......................................................................................................................................................ATG-GTT---GGGAGTGAAGGG........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000
...........................GTCTGGCATTCTTGCACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEug1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAGATG--------TA-----------CCATAT------------------------------------------------------------AAAATG-G---------------------AAGGGGCTGCAGTTGG-----------------------------------------------------------------------TGGTTGGTAG--TGGAAGGCTA--------AAGACCGAACACCAAAGAC-------TGG----AGAGTG--GAGAG----TG-------ACG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGCAC------CACGG------------------------ATCT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATACACCATATACC-----ATATATACCATAT------------------------------------------------------------AATATG-GGT---GG--ATGAAG------CAGGGACTGCAGTTGG-----------------------------------------------------------------------TG------------GAAGAC---------------CAAAGACC--------------GA----AGACTG--GAGAG----TG-------GAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAGCAC------CGCGG------------------------ATCT---------G------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAGATA--------TA-----------CCATAT------------------------------------------------------------AA-ATA------------------------A---GCTGCAGTTTGAC---------------------------------------------------------------------T-------------GAAGAC---------------TAAAGACTGAATAG-------TGG----AGAGTG--GAGAG----TGAAGAGCGGAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAGTAG-AGCTCCA--------------------------------------------------------------------------------------------TGASizeHit CountTotal NormTotal
No Reads
droEle1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATAAAAT------------------------------------------------------------------------------------------------------------------------GCACGTAT-ATGTATATATTGGTGGGG-------------AGTTGT---------------------------------TG-------------AAGACAG--------AAGACTGAAGACAGAGGAC-------AGA----AGACTG--GAGAG----TG-------GAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGTACGAGCTCCGCGG------------------------CTCC---------G----------------------------------------------GCTTTTGGSizeHit CountTotal NormTotal
No Reads
droRho1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATAGTGTGTTGT-----ATATA------------TA------TATATGTATATGG-TGGATAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAGAC-------TGG----AGAGTG--GAGAG----TG-------GAT---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGGCTTATGAGCTC------CGCGG------------------------ATCT---------A----------------------------------------------GCTTTTGGSizeHit CountTotal NormTotal
No Reads
droFic1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGATATAGCATTTT--C-----------CCATTT--------------------------------------------------------------------------------GTGT--------------------------GTGTGTTG-TGTTG-------------TGTTGTGT--------------------------------------------G---------------------TGGGGACTGGGGAG-------TGA----AGACTG--GTAAG----AG-------GAG---------AGCTCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCGTATGAGCAG------CGCGG------------------------ATCT---------G----------------------------------------------GCTTTCGGSizeHit CountTotal NormTotal
No Reads
droKik1
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGACATGT-G---T--------------CCA----------------------------------------------------------------------------------------------------------GC--------------------AGG-AGGAGCA-ATCC-------GAGGGAGAGTGGATTGGAGTGGAGTGGAGTCTTGGGAGACTGGAAGGCT----------------------GA------TAGGCTG----------G--GAGAGTGAGTG-------GCA---------AG--CT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCATATGAG----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCCATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAG-------------------------------------------------------------------------------------------------------------------------------GCAGTTCCCC------------------CGAGGAGTCC----CA---AGTGGAGAGT--------------------------------------------------------------AATGGTGAT-------TGG----ACAGTG--GAGAG----TGCTGGGGAGAG---------AGCTCTACTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CA-TTGCGTGCTTTGTTTGCCTCATGAGCTG------AGCTG------------------------AGCT---------G----------------------------------------------AGCCCGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................CAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................GAGTCTGGCATTCTTGCACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................ACAAGAGTCTGGCATTCTTGCACACCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.................GTCAACAAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............AATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..........................................................................................................................................................................................................................GTCC----CA---AGTGGAGAGT--------------------------------------------------------------AATGGTG..............................................................................................................................................................................................................................................................2311.001010000
...........................GTCTGGCATTCTTGCACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................AGTCTGGCATTCTTGCACACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................GTCTGGCATTCTTGCACACCAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
.....AAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
........ATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................GTCTGGCATTCTTGCACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............AAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
TCCACAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGAGGCAG-T---T--C-----------CCAGAG------------------------------------------------------------GA-GTG-------GCAAGTGGAGA--------------------------------------------------------------------GA-------------------------------------------------------------GAGTGGAGTT-------TGG----AGTGTG--GAGAG----TG--GGG--AAG---------AGAGCT-CTACGCATTTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGC------CG-TTGCGTGCTTTGTGTGGCTCATGAGCCA------------------------------------------------G----------------------------------------------GCTGT---SizeHit CountTotal NormTotal
No Reads
dp5
TACATAAAATTGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACAAAGGTGAGAGACG--------CA------------CACACGGTAAAGAGAGAGATAGACAGATGGACGGACACTCTCCAAAAAAAAAAAAAAAGAAAAGAGA-GTG-GCGACAGCGAGTGGAGGGAGT---------GCAGA-------------------------------------------------------------------------------------------------------------------------------------------------GGGAG----TG-------GAGT--------GGATCT-TTACGCATTTGTAGAAAGTGCAAGTCTGCGGCTG-CGCAGCCAAGCGCGTGGCT-----CG-TTGCGTGCCTTGTTTGCCGTATGAGCCG------TATG-------------------------AGCGGGAGG----G----------------------------------------------ACAGATGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............AATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
...........GAAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
.............AAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG------TATG-------------------------AGCGGGAGG----G----------------------------------------------ACAGATG.2411.0010100000000
....................................................................................................ATAGACAGATGGACGGACAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................TCTGGCATTCTTGCACACAAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............AAAATGTCAACAAGAGTCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.........................................................................................................................................................................GGGAGT---------GCAGA-------------------------------------------------------------------------------------------------------------------------------------------------GGGAG----TG-------GAGT--------G.......................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGAGCCG------TATG-------------------------AGCGGGAGG----G----------------------------------------------A.......2611.0010000000001
........ATTGAAAATGTCAACAAGAGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............ATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................AGTCTGGCATTCTTGCACACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................GAGTCTGGCATTCTTGCACACAAAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCAAGTCTGCGGCTG-CGCAG.........................................................................................................................................................2411.0010000100000
...................CAACAAGAGTCTGGCATTCTTGCACACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
.................GTCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.......................AAGAGTCTGGCATTCTTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................ATTCTTGCACACAAAGGTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010010000000
........................................................................................................................TCTCCAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510100000000
droPer2
TACATAAAATTGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACAAAGGTGAGAGACG--------CA------------CACACGGGAAAGAGAGGGATAGACAGATGGACGGACACTCTCAAAAAAAA---------AAAAGAGA-GTG-GCGACAGCAAGTGGAGGGAGTGCAGGGAGTGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------GGGAG----TG-------GAGT--------GGATCT-TTACGCATTTGTAGAAAGTGCAAGTCTGCGGCTG-CGCAGCCAAGCGCGTGGCT-----CG-TTGCGTGCCTTGTTTGCCGTATGAGCGG------GAGGG------------------------ACAG-ATGGTGGTGGTCTCCCCCGGATCCCCTCTGGCCCATCCACCA--------------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............ATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.005302000
...........GAAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.005500000
..............AATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
...........................GTCTGGCATTCTTGCACACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
................TGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.................................................................................................................................................................................................................................................................................................................................................AG----TG-------GAGT--------GGATCT-TTACGC...........................................................................................................................................................................................2011.001100000
................................................................................................AGGGATAGACAGATGGACGGACACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................GTCTGGCATTCTTGCACACAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............AATGTCAACAAGAGTCTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................CAACAAGAGTCTGGCATTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
TACATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTGAGTGTTT--------TCCCAAATA------------GAAA-----------------------------------------------------------GA---------------------------GATGCACATACCCTGAATAAAGAG-GGTGG-------------AGTG---G--------------------------------------------GCG------A-GGAGA----------------------GAG----AAAGA--------GAGAGATAGAG---------A---------AG--GC-CTACGCATGTGTAGAAAGTGCAAGTC-GCGCCTG-CGCAGCT--GCGCGTGGCCATGGCCA-TTGCGTGCTTTGTTTGTCTTATGAGATT----------G------------------------TGAT---------G----------------------------------------------ATGATCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............ATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1916.00610320
.................GTCAACAAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300111
...ATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200020
.........................GAGTCTGGCATTCTTGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..............AATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................GG-------------AGTG---G--------------------------------------------GCG------A-GGAGA----------------------GA........................................................................................................................................................................................................................................................1811.00101000
.................GTCAACAAGAGTCTGGCATTCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..................TCAACAAGAGTCTGGCATTCTTGCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATT----------G------------------------TGAT---------G----------------------------------------------ATGATC..1911.00100010
.....................ACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................GTCTGGCATTCTTGCACACCAAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...................CAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
................TGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
...........................................................................................................................................................................................................AG-GGTGG-------------AGTG---G--------------------------------------------GCG------A-GGAGA----------------------..........................................................................................................................................................................................................................................................2111.00101000
.................GTCAACAAGAGTCTGGCATTCTTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
...................CAACAAGAGTCTGGCATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
..................................................................................................................................................................................................................................................................................................GA----------------------GAG----AAAGA--------GAGAGATA..............................................................................................................................................................................................................................18200.05100100
..................................................................................................................................................................................................................................................................................................GA----------------------GAG----AAAGA--------GAGAGATAG.............................................................................................................................................................................................................................19200.05100100
droVir3
TACATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTACG-------------------------------T------------------------------------------------------------AA-GAG-GGA----------------------------------------------------GA----------------A---A--------------------------------------------GGG------A--GGGA--------------GA------GAG----AGAGA--------GAGAGAGAGAG-------AAA-A-------AG--GC-CTACGCATTTGTAGAAAGTGCAAGTC-TC--TTGAGGCAGCT--GCGCGTGGA------CG-TTGCGTGCTTTGTTTGCCACATGAGCTG------CACAG--------------------------CG---------A----------------------------------------------GAGTTATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................GTCTGGCATTCTTGCACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003002100000000000000000000000000000000000000000000000000000000000
........ATCGAAAATGTCAACAAGAGTCTGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000001100000000000000000000000000000000000000000000
.................GTCAACAAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAGCT--GCGCGTGGA------CG-...................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................CAAGAGTCTGGCATTCTTGCACACCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000100000000000000000000000000000000000000000
.ACATAAAATCGAAAATGTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..CATAAAATCGAAAATGTCAACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................GTCTGGCATTCTTGCACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................GTCTGGCATTCTTGCACACCAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................CTTGCACACCAAGGTACG-------------------------------T------------------------------------------------------------AA-GAG-GGA----------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
........ATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.............AAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGTTTGCCACATGAGCT........................................................................................................2011.001000000000000100000000000000000000000000000000000000000000000000
...ATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
....................AACAAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...........GAAAATGTCAACAAGAGTCTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........ATCGAAAATGTCAACAAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000010000000000000000000000000000000000000000000000
.................GTCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
......................................TTGCACACCAAGGTACG-------------------------------C------------------------------------------------------------TT-..............................................................................................................................................................................................................................................................................................................................................................................................................................2090.111000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................GGA--------------GA------GAG----AGAGA--------GAGAGA................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TACATAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTACG-------------------------------TGTGAAA-----------------------------------------------------------GA---------------------------GAT--------------------G-TGTGACAGAGA----------G---T--------------------------------------------GCG------ACAGAAA----------------------GAG----AAAGA--------GAGAGAGAGAG-------ATA-A-------AG--GC-CTACGCATTTGTAGAAAGTGCAAGTC-TC--TTGAGGCAGCT--GCGCGTGGCC-----TG-TTGCGTGCTTTGTTTGCCACATGAGTGA-------GC-----------------------CA--TC-------------------------------------------ATACAAAAAAAGTCACT-TTAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................GTCTGGCATTCTTGCACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................GTCAACAAGAGTCTGGCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................GTCAACAAGAGTCTGGCATTCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................GTCTGGCATTCTTGCACACCAAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............................CTGGCATTCTTGCACACCAAGGTACG-------------------------------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
TACATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.................................................................................................................................................................................................................GACAGAGA----------G---T--------------------------------------------GCG------ACAGAAA----------------------GA........................................................................................................................................................................................................................................................2211.001100000
...ATAAAATCGAAAATGTCAACAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................GAAA----------------------GAG----AAAGA--------GAGAGA................................................................................................................................................................................................................................18200.051100000
..........................................................................................................................................................................................................................................................................................................................GAG----AAAGA--------GAGAGAGAGAG-------A...................................................................................................................................................................................................................20200.051000010
droGri2
TACACAAAATCGAAAATGTCAACAAGAGTCTGGCATTCTTGCACACCAAGGTAAA-CA----------------------------T------------------------------------------------------------AA-GT--------------------------------GCA-----------------------ACAGAGAGACACTTATCG---A--------------------------------------------GCG------A--GAGA----------------------GAG----AAAGA----GG--GAGAG--AGAG------AGAGAGTTTGCTTAG--GC-CTACGCATTTGTAGAAAGTGCAAGTC-TTGA----AGCAGCT--GCGCGTAGCC-----CGTTTGCGTGCTTTGTTTGCCACATGAGTTA------AAAAAAAACGAAGGAGAGTTATAAGCCGTGTCT---------A----------------------------------------------CATAC--ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:02 PM