dsi_3161

CDS [3l_19283560_19283997_-]; exon [3l_19283560_19283997_-]; intron [3l_19282246_19283559_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCGGGGACTCACGGCTAGCAATCTCAGCAACGACGATCTCAGCAGCAGCGGTGAGCAATCCAACTCCACAAATTCAAACGATGCAGGGCGCTCGCCTGCCTCCTCGCCTGCCTCAAGTTCCATGGAGGATCTGATCACGCGTGACCTGAGGAACACCCAACAGGTGATTGCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGCGCTGGCCATGCGCAACTATGTTGAC ****************************************************************..................((..(((.((....(((((......((.....)).....))))).........)).)))..))*****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902009 testis	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
..................................................................................................................................................................................CAGTACACCATCGATCTCTGC...................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGAACGACTTCCAGGCGCTGGCCA.................	25	1	1	1.00	1	0	0	0	0	1	0	0	0
..................................................................CACAAATTCAAACGATGCAGGG..................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................TCTCTTCGAGCAGGCCTT........................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
...............................................................................................................................GATCTGATCACGCGTGACCT.......................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.........................................................................................................................................CGCGTGACCTGAGGAACACCCAACAGG......................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0
...............................................................................................................CTCAAGTTCCATGGAGGAT........................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0
....................................................................................................................................GCTCGCGCGTGACGTGAGGA..................................................................................................	20	3	2	0.50	1	0	0	0	0	0	0	1	0
.........................AGCAACGACGTTACCAGCAGCA...........................................................................................................................................................................................................	22	3	7	0.14	1	0	1	0	0	0	0	0	0
............................................................................................................................................GTGACCTGCGGAACAGCC............................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	1	0
...................................................................................................................GGTTCCAAGGAGGATCT......................................................................................................................	17	2	16	0.06	1	0	0	0	0	0	0	1	0
..........................................................................CTAAGGATGTAGGGCGCT..............................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	1

AGCCCCTGAGTGCCGATCGTTAGAGTCGTTGCTGCTAGAGTCGTCGTCGCCACTCGTTAGGTTGAGGTGTTTAAGTTTGCTACGTCCCGCGAGCGGACGGAGGAGCGGACGGAGTTCAAGGTACCTCCTAGACTAGTGCGCACTGGACTCCTTGTGGGTTGTCCACTAACGGGTGTTGGTCGTGTGGTAGCTAGAGAAGCTCGTCCGGAACTTGCTGAAAGTCCGCGACCGGTACGCGTTGATACAACTG *****************************************************************************************************..................((..(((.((....(((((......((.....)).....))))).........)).)))..))****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR1275485 Male prepupae	SRR902009 testis
...........................GTTGCTGCTAGAGTCGTCGTC..........................................................................................................................................................................................................	21	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCTAGAGAAGCTCGTCCGGAACT......................................	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................GGAGCGGACGGAGTTCAAGGTACGT............................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
........................AACGTTGCTGCTAGAGTCGTCGT...........................................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................AGTCGTTGCTGCTAGAGTCGTCGT...........................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
...........................GTTGCTGCTAGAGTCGTCGTCGC........................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TAAGTTTGCTACGTC....................................................................................................................................................................	15	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AGGAGCTCGTCCTGAGCTTG....................................	20	3	7	0.71	5	0	0	0	5	0	0	0	0	0	0	0	0
................................................CCCACTCGTTAGGTTG..........................................................................................................................................................................................	16	1	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GGGTGTTGATCGTGTGGTGTCT..........................................................	22	3	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0
.........................TCGTTTCTGCTATAGTCGTAG............................................................................................................................................................................................................	21	3	4	0.50	2	0	0	0	0	0	0	1	1	0	0	0	0
......................................................................................................................................AGTGCGGACTGAACTCCT..................................................................................................	18	2	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0
..............................................TCACCACTTGTTAGGTTG..........................................................................................................................................................................................	18	2	7	0.29	2	0	0	0	0	0	0	1	0	0	1	0	0
...........................................................................................AGCGGACGGAGGAACG...............................................................................................................................................	16	1	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0
..................................................CACTCGTTAGGTTGCG........................................................................................................................................................................................	16	1	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................GGAGGTGCGGACGGA.........................................................................................................................................	15	1	16	0.19	3	0	0	2	0	0	0	0	0	1	0	0	0
.......................................................................TAAGTTCGCTACGTC....................................................................................................................................................................	15	1	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0	0
............................................................................................GCGGACGGATGAGCGGCC............................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................CTGAAAGTCCTAGACCAGTA................	20	3	7	0.14	1	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................GAGCGGACGGTGTTC.....................................................................................................................................	15	1	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................GGAGGTGCGGACGGAT........................................................................................................................................	16	2	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................GTGTTGGTCGATTGGTAG............................................................	18	2	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TGCGGACGGATGAGCGG..............................................................................................................................................	17	2	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................GGGTGCGGACGGATGAGCGG..............................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................CGGACGGATGAGCGGCC............................................................................................................................................	17	2	12	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................TTAGGTAGAGGTGTT...................................................................................................................................................................................	15	1	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................AGCGGACGGATGAGCAG..............................................................................................................................................	17	2	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................GGCCTAAGTTTGCTACGTC....................................................................................................................................................................	19	3	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................CGGAGGTGCGGACGGATG.......................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0
...............................CTGCTGGAGTCGTCGGC..........................................................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0
....................................................CTGGTTAGGTTGAAGTGGT...................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................AGCGGACGGAGGAAC................................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:19283360-19283609 -	dsi_3161	TCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGGAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTGGCCATGCGCAACTATGTTGAC
droSec2	scaffold_29:335648-335897 -		TCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGAC
dm3	chr3L:19632784-19633030 -		TCGGGGACTGACGGCTAGCAATCTCAAC---GATGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGAC
droEre2	scaffold_4784:19431000-19431246 -	der_860	TCGGGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTAGCCATGCGCAACTATGTTGAC
droYak3	3L:20911494-20911740 +	dya_845	TCGAGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCTCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGAC
droEug1	scf7180000409472:182374-182620 -		AAGGGGACTGGCAGCTAGTAACATCAGC---GACGA---TCC------CAGCAGC-------------------------AGCGGTGAGCAAACCAACTCCACAAATCCACAAGA---------------------------------------------------------------------------------------------------------------------AACAGGACGCTCGCCTGCC---------TC---CTCACCTGCCCCTAGTTCCATGCAGGATCTGATC------------AGGCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCATAATCAGCACACAATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAACAATGCGAAACTATGTGGAC
droBia1	scf7180000302377:1972121-1972373 +		ACGTGGATTTGCAGCTAGTAACATCAGC---GACGA---TCCGAGCAGCAGCAGC-------------------------AGCGGTGAGCAAACCAACTCCACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TACAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCGAGTTCCATGCAAGACCTGATC------------TCGCGGGACCTGAGAAA---CACCCAACAGGTGATC---------GCCCACAATCAACACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAGCTATGCGCAACTATGTGGAC
droTak1	scf7180000412525:12171-12426 -		CCGGGGATTAGCAGCCAGCAACATCAGT---GACGA---TCC------AAGCAGC-------------AGCAGCA---GCAGCGGTGAGCAAACCAACTCTACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TGAAGGACGCTCGCCTGCC---------TC---CCCGCCTGCCTCGAGTTCCATGCAAGACCTGATA------------ACCCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCACAATCAGCACACCATCGATCTCTTTGAGCAGGCCTTGAATGACTTCCAGGC---GCTAACCATGCGCAACTATGTGGAC
droEle1	scf7180000491249:6938468-6938723 -		CCGTGGCTTGGCGGCCAGCAACATCAGC---GACGA---TCC------CAGCAGC-------------AGCAGCA---GCAGCGGTGAGCAAACCAACTCCACAAATCCACAGGA---------------------------------------------------------------------------------------------------------------------CGCAGGACGCTCGCCTGCC---------TC---CTCGCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGCGGAA---CACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAACTATGTGGAC
droFic1	scf7180000453831:190014-190260 -		CCGGGGACTGGCAGCCAGCAACATCAGC---GATGA---TTC------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTTACAGGA---------------------------------------------------------------------------------------------------------------------TGCAGGACGCTCGCCTGTC---------TC---CGCTTCTGGCTCAAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGAGGAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTATGTAGAC
droKik1	scf7180000302694:179083-179341 -		CCGAGGATTGGCAGCCAGCAACATCAGC---GATGA---CCC------CAGCAGC-------------AGCAGCAGTAGCAGCGGTGAGCAAACCAATCCCACAAATCCGCAGAT---------------------------------------------------------------------------------------------------------------------CGCCGGACGCTCGCCTGCC---------TC---CTCGCCGCCCTCAAGTTCGATTCAGGATCTCATC------------ACGCAAGACTTGAGAAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTACGTGGAC
droAna3	scaffold_13337:17257817-17258054 +		CAGAGGACTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C-------------------------------AGCGGTGAGCAAATCCAATCCACAGATCCTCAAGA---------------------------------------------------------------------------------------------------------------------AGCAGGACGCTCGCCTGCC---------TC---CTCTC---CCCCCAACTCCATACAAGATCTCATC------------ACAGAGGACTTGCGGAA---TACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAATTACGTGGAC
droBip1	scf7180000396741:554377-554623 +		CAGAGGGTTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C-------------------------------AGCGGTGAGCAAATCCAATCCACAGATCCACAGGA---------------------------------------------------------------------------------------------------------------------AGCGGGACGCTCGCCTGCC---------TC---CTCGCCG---CCCAATTCCATACAAGATCTCATC------------ACGGAGAACTTGCACAC---CCTCCAGCACACCATCCAGCACATCCAGAACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAATAACTTCCAGGC---GCTAACCATGCGCAGCTACGGGGAC
dp5	Unknown_singleton_3471:8887-9181 +	dps_2367	GCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TCC---CAGCAGCAGC-------------------------AGCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACACCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGAATCAGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGAC
droPer2	scaffold_48:483278-483572 -		GCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TGC---CAGCAGCAGC-------------------------AGCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACAGCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGGATCTGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGAC
droWil2	scf2_1100000004762:4755983-4756274 -	dwi_2040	ACGTGGCTTGACCTCCAGCAATATAAGT---GATGA---TCCTGCTGCCACTATAAGCGGTGAGCAACAACAACA------------------ACAACTACAACAACT--------------------------------------------------AGAGCAGGTGAACAA-----------------------------------------------------------TCCAAATCAATCCTCTGCCTCTATAGCCTC---CTCTTCGTCGCCACATTCCATGCAAGATCTCATGTATATGGTATCAACTGAAGATCTTTTGGATACCACACAACAGGTGATA---------GCAACCAATCAGCATACCATAGATCTCTTCGAGCAGGCCTTGAATGATTTTCAAGC---ACTAACCATGCGACAATATGTGGAC
droVir3	scaffold_13049:13211740-13212058 -	dvi_19773	CCGTGGCCTGGCCGCCAGCAACATCAGT---GACAG---CGC---CAATGATCTG-------------------------AGCGGTGAGCAAACCTACTCC---AATCCACAAACATCCAA---------------------CACAACAGGTGCA---------------GAACCGCAGACGCAGGGTACTAGTACGGGTATGGGT---------------GCTATTGC---TGCTGCCCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCTCAGCG---CCACTGAGGATTTGCTGGACACCACACAACAGGTCATT---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTCACCCTGTGCAACTTTGTCGAC
droMoj3	scaffold_6680:14151579-14151912 +		GCGCGGCCTGGCCGCCAGCAACATCAGC---GACAG---CGT---CAACGACCTA-------------------------AGCGGTGAGCAAATCTACTCC---AATCCACACACAGCCAA---------------------CACAGCAGGTGCAACAGG------TGATGAGCAGCAGTC---------AGGTGCGGGTGTGGGTCTGGGTCTGGGCTTGGGTGTTGC---TGCCACGCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCGCAGCG---CCACAGAGGATCTGCTGGACACCACGCAACAGGTGATC---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTCACGCTGCGCAACTTTGCCGAT
droGri2	scaffold_15110:18650565-18650877 -	dgr_337	TCGTGGATTGGCGGCCAGCAATATTAGC---AGTGACAGCGC---CAGTGACTTG-------------------------AGTGGTGAGCTAATCT---ACACAAATCCACAATCCTCCAATCCAAACCAGACATCATCATCATCATCAGCAGCAGCAGCAGCGGT------------------------------------------------------------------TGTTGTTGGTTCGCTTGCC---------TCAAACTCGC---ACTCGAATTCCATACAGGATCTGATGCTGAGCG---CAACGGAGGATTTGCTGGACACCACACAGCAGGTGATC---------GAGACCAATCAGCATTCCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTTACCATGCTCAATTTTGTCGAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGGAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTGGCCATGCGCAACTATGTTGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................CACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGG.........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCTCTTCGAGCAGGCCTT...........................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GATCTGATC------------ACGCGTGACCT......................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CGCGTGACCTGAGGAA---CACCCAACAGG..................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CTCAAGTTCCATGGAGGAT...................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

TCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCCTTGAACGACTTCCA...............................	21	1	2.00	2	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CACACCATCGATCTCTTCGAGCAGGC..............................................	26	1	1.00	1	1	0	0	0

dm3

TCGGGGACTGACGGCTAGCAATCTCAAC---GATGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................TCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGC......................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................TCAAC---GATGA---TCT------CAGCAGC-------------------------AGCGGT..................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TCGGGGACTGACGGCTAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
....................................................................................................................................................................................................................................................................................................TCTGATC------------ACGCGTGACCTGAGGAA---CACC.........................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGCAGGATCTGATC------------ACGCGTGACC.......................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................AAC---GATGA---TCT------CAGCAGC-------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................ATCTGATC------------ACGCGTGACCTGAGGAA---.............................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAAC......................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................CTCAAC---GATGA---TCT------CAGCAGC-------------------------AGCGGT..................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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.......................TCAAC---GATGA---TCT------CAGCAGC-------------------------AGCGGC..................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................ATC------------ACGCGTGACCTGAGGAA---CACCCAACA....................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GATGA---TCT------CAGCAGC-------------------------AGCGGTGAGA..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................TCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTC....................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................AAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---...............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CCATGCAGGATCTGATC------------A................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GATGA---TCT------CAGCAGC-------------------------AGCGGTGAGCA.............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GATCTGATC------------ACGCGTGACCTGAG...................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GTGATT---------GCCCACAACCAG........................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCGGGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTAGCCATGCGCAACTATGTTGAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................GGATCTGATC------------ACGCGTGACCTG.....................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................GACGA---TCT------CAGCAGC-------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CAGGATCTGATC------------ACGCGTGACC.......................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
...........................C---GACGA---TCT------CAGCAGC-------------------------AGCGGTGA................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.CGGGGACTGACAGCTAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...............................GACGA---TCT------CAGCAGC-------------------------AGCGGTGAGC..............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................CCATGCAGGATCTGATC------------ACGC.............................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCAGGCCTTGAACGA.....................................	20	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CCCACAACCAGCACACCATCGATCTC.........................................................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

TCGAGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCTCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGGCCTTGAACGACTTC.................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................TGCAGGGCGCTCGCCTGCC---------T...................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AAGGGGACTGGCAGCTAGTAACATCAGC---GACGA---TCC------CAGCAGC-------------------------AGCGGTGAGCAAACCAACTCCACAAATCCACAAGA---------------------------------------------------------------------------------------------------------------------AACAGGACGCTCGCCTGCC---------TC---CTCACCTGCCCCTAGTTCCATGCAGGATCTGATC------------AGGCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCATAATCAGCACACAATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAACAATGCGAAACTATGTGGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACGTGGATTTGCAGCTAGTAACATCAGC---GACGA---TCCGAGCAGCAGCAGC-------------------------AGCGGTGAGCAAACCAACTCCACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TACAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCGAGTTCCATGCAAGACCTGATC------------TCGCGGGACCTGAGAAA---CACCCAACAGGTGATC---------GCCCACAATCAACACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAGCTATGCGCAACTATGTGGAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCGGGGATTAGCAGCCAGCAACATCAGT---GACGA---TCC------AAGCAGC-------------AGCAGCA---GCAGCGGTGAGCAAACCAACTCTACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TGAAGGACGCTCGCCTGCC---------TC---CCCGCCTGCCTCGAGTTCCATGCAAGACCTGATA------------ACCCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCACAATCAGCACACCATCGATCTCTTTGAGCAGGCCTTGAATGACTTCCAGGC---GCTAACCATGCGCAACTATGTGGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCGTGGCTTGGCGGCCAGCAACATCAGC---GACGA---TCC------CAGCAGC-------------AGCAGCA---GCAGCGGTGAGCAAACCAACTCCACAAATCCACAGGA---------------------------------------------------------------------------------------------------------------------CGCAGGACGCTCGCCTGCC---------TC---CTCGCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGCGGAA---CACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAACTATGTGGAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGGGGACTGGCAGCCAGCAACATCAGC---GATGA---TTC------CAGCAGC-------------------------AGCGGTGAGCAATCCAACTCCACAAATTTACAGGA---------------------------------------------------------------------------------------------------------------------TGCAGGACGCTCGCCTGTC---------TC---CGCTTCTGGCTCAAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGAGGAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTATGTAGAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCGAGGATTGGCAGCCAGCAACATCAGC---GATGA---CCC------CAGCAGC-------------AGCAGCAGTAGCAGCGGTGAGCAAACCAATCCCACAAATCCGCAGAT---------------------------------------------------------------------------------------------------------------------CGCCGGACGCTCGCCTGCC---------TC---CTCGCCGCCCTCAAGTTCGATTCAGGATCTCATC------------ACGCAAGACTTGAGAAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTACGTGGAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGAGGACTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C-------------------------------AGCGGTGAGCAAATCCAATCCACAGATCCTCAAGA---------------------------------------------------------------------------------------------------------------------AGCAGGACGCTCGCCTGCC---------TC---CTCTC---CCCCCAACTCCATACAAGATCTCATC------------ACAGAGGACTTGCGGAA---TACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAATTACGTGGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................GGACGCTCGCCTGCC---------TC---CTCT...........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................GCTCGCCTGCC---------TC---CTCTC---CCCCC..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................ACACCATCGATCTCTTCGAGC..................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGATCTCATC------------ACAGAGGACTTGC....................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................GAGGACTTGCGGAA---TACCCAGCA....................................................................................................	23	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................CAGCAGGTGATT---------GCCCACAACC..........................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

CAGAGGGTTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C-------------------------------AGCGGTGAGCAAATCCAATCCACAGATCCACAGGA---------------------------------------------------------------------------------------------------------------------AGCGGGACGCTCGCCTGCC---------TC---CTCGCCG---CCCAATTCCATACAAGATCTCATC------------ACGGAGAACTTGCACAC---CCTCCAGCACACCATCCAGCACATCCAGAACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAATAACTTCCAGGC---GCTAACCATGCGCAGCTACGGGGAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TCC---CAGCAGCAGC-------------------------AGCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACACCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGAATCAGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTT.......	23	2	17.00	34	0	34	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTTTGC....	26	2	10.00	20	0	20	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTTTG.....	25	2	5.50	11	0	11	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCT........	22	2	3.50	7	0	7	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTTT........................................................	24	2	3.00	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---CC.................................................................................................................................	22	2	3.00	6	0	5	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTTTT.......................................................	25	2	2.00	4	0	4	0	0	0	0	0	0	0	0
......................................................................................................ACAATCTACAGGACTCTGA---------------------AACACC....................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CGAGAATCAGTTGAA---CACCCAGCAGG..................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................AAACAATCTACAGGACTCTGA---------------------AACA......................................................................................................................................................................................................................................................................................................	25	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CTCCTGTTCAGCG---CCACCGAGAA.........................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCTT.......	22	2	2.00	4	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTTT......	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCTTG...............................................................................................................................................................................................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCT........	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTCAGC.......................................................................................................................................	26	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................ATGTCAAACAATCTACAGGACTCT.................................................................................................................................................................................................................................................................................................................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCTTTGC....	25	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................ATGTCAAACAATCTACAGGACTCTGA---------------------..........................................................................................................................................................................................................................................................................................................	26	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---C..................................................................................................................................	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TCTCCTGTTCAGCG---CCACCGAGA..........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CCAGCACACCATCGATCTTTTCGAGC..................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................TACAGGACTCTGA---------------------AACACCAGCAG...............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCAGCA....................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCA.......................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACAC..........	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTCAG........................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCAGC.....................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................ACAATCTACAGGACTCTGA---------------------AACA......................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CAAGATCTCCTGTTCAGCG---CC.................................................................................................................................	21	2	1.00	2	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................TTG------------------------------------------------------------CACATACATCGCGCTCGCTTG...............................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TCAGTTGAA---CACCCAGCAG...................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................ATGTCAAACAATCTACAGGACTC..................................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.......................TCAGC---GAGGA---TCC---CAGCAGCAGC-------------------------AG......................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................AGGACTCTGA---------------------AACACCAGCAGCAC............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................CAATCTACAGGACTCTGA---------------------AACACCAG..................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCAG......................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTCAGCG---C..................................................................................................................................	28	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................AGGACTCTGA---------------------AACACCAGCAGCA.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......CTGGCGGCCAGCAACATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCT.................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AACCAGCACACCATCGATCTTTTCGA....................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................GTCAAACAATCTACAGGACTCTGA---------------------AA........................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................C---GAGGA---TCC---CAGCAGCAGC-------------------------AGCGG...................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................GCACCAGGAGCAGTTG------------------------------------------------------------CACAT...............................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AGCTCTATTCAAGATCTCCTG.............................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTGAA---CACCCAGCAGGTGATA---------GCCAGCA.............................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................AGATCTCCTGTTCAGCG---CCACCG.............................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTT.........................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCTTGC..............................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................TGTCAAACAATCTACAGGACTCTG................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................GTTGAA---CACCCAGCAGGTGATA---------GC..................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAGCAGGCCTTGAAC.......................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCGAGCAGGCCTTGAACA......................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................GTTG------------------------------------------------------------CACATACATCGCGCTCGCT.................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................TCAGC---GAGGA---TCC---CAGCAGCAGC-------------------------........................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................AAACAATCTACAGGACTCTGA---------------------AA........................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TCATGTCAAACAATCTACAGGACT...................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CATCGCGCTCGCTTGCC---------TC---CT.............................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................AACAATCTACAGGACTCTG................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TCCTGTTCAGCG---CCACCGAG...........................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCGAGCAGGCCTTGAACGA.....................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................GAGCAAATCATGTCAAACAATC............................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GCACACCATCGATCTTTTCGAGCAG................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AGCTCTATTCAAGATCTCCTGTTCAGC.......................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TGATA---------GCCAGCAACCAGCACACCATC...............................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ATCGATCTTTTCGAGCAGGCCTTG..........................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---CCAC...............................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CAGCACACCATCGATCTTTTCGAG...................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ATCGATCTTTTCGAGCAGGCCT............................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTATTCAAGATCTCCTGTTC..........................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACC.........	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGGCCTTGAACGATTTCC................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------....................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCTTTG.....	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------....................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CTCTATTCAAGATCTCCTGTTCAGCG---C..................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................ACAATCTACAGGACTCTGA---------------------AAC.......................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CC---------TC---CTCAC---ACTCCAGCTCTATTCA.......................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................TCAGC---GAGGA---TCC---CAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................TCAGC---GAGGA---TCC---CAGCAGCAGC-------------------------A.......................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TCATGTCAAACAATCTACAGGAC....................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................AAACAATCTACAGGACTCTGA---------------------AAC.......................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---CCA................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................GGA---TCC---CAGCAGCAGC-------------------------AGCGGTG.................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................TGTCAAACAATCTACAGGACTCTGA---------------------AA........................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................AGGTGATA---------GCCAGCAACCAG........................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................ACACCATCGATCTTTTCGAGCAGG...............................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTATTCAAGATCTCCTGTTCAGCG---CC.................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTTTTCG.....................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................GTCAAACAATCTACAGGACTCTG................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATC...........................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCTTGAACGATTTCCAAGCCAGACT......................	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTTGCACACCTTTGCGGA.	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TCCTGTTCAGCG---CCACCGA............................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTCCAAGCCAGACT......................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CAAGATCTCCTGTTCAGCG---C..................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---T..................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAGCAGGCCTTGAACGA.....................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTC..........................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTCAAGATCTCCTGTTCAGCG---CCAC...............................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................TCAGC---GAGGA---TCC---CAGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................GA---TCC---CAGCAGCAGC-------------------------AGCGG...................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................CACCAGGAGCAGTTG------------------------------------------------------------CACAT...............................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTG------------------------------------------------------------CACATACATCGCGCTCGCTTGC..............................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGGCCTTGAACGATTTC.................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................CAGGAGCAGTTG------------------------------------------------------------CACATACATCGCG.......................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................ATGTCAAACAATCTACAGGACTCTGA---------------------AA........................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TGC---CAGCAGCAGC-------------------------AGCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACAGCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGGATCTGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................CATGTCAAACAATCTACA........................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................ATTCAAGATCTCCTGTTCAGCG---CC.................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................CGCTTGCC---------TC---CTCAC---ACTCCA.................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droWil2

ACGTGGCTTGACCTCCAGCAATATAAGT---GATGA---TCCTGCTGCCACTATAAGCGGTGAGCAACAACAACA------------------ACAACTACAACAACT--------------------------------------------------AGAGCAGGTGAACAA-----------------------------------------------------------TCCAAATCAATCCTCTGCCTCTATAGCCTC---CTCTTCGTCGCCACATTCCATGCAAGATCTCATGTATATGGTATCAACTGAAGATCTTTTGGATACCACACAACAGGTGATA---------GCAACCAATCAGCATACCATAGATCTCTTCGAGCAGGCCTTGAATGATTTTCAAGC---ACTAACCATGCGACAATATGTGGAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................AACA------------------ACAACTACAACAACT--------------------------------------------------AGAGC.....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
...................................................................CAACAACA------------------ACAACTACAACAACT--------------------------------------------------A.........................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0

droVir3

CCGTGGCCTGGCCGCCAGCAACATCAGT---GACAG---CGC---CAATGATCTG-------------------------AGCGGTGAGCAAACCTACTCC---AATCCACAAACATCCAA---------------------CACAACAGGTGCA---------------GAACCGCAGACGCAGGGTACTAGTACGGGTATGGGT---------------GCTATTGC---TGCTGCCCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCTCAGCG---CCACTGAGGATTTGCTGGACACCACACAACAGGTCATT---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTCACCCTGTGCAACTTTGTCGAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................CATCCAA---------------------CACAACAGGTGCA---------------GA............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GGGTACTAGTACGGGTATG.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CACAACAGGTGCA---------------GAACCGCA......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................ACAACAGGTGCA---------------GAACCGCAGA....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TGCTGGACACCACACAACAGGT.................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GCG---CCACTGAGGATTTGCTGGACACCACACAACAGGTCA...............................................................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................AGT---GACAG---CGC---CAATGATCTG-------------------------AGCGGT..................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGCA---------------GAACCGCAGACGCAGGGTACTA........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCGCGGCCTGGCCGCCAGCAACATCAGC---GACAG---CGT---CAACGACCTA-------------------------AGCGGTGAGCAAATCTACTCC---AATCCACACACAGCCAA---------------------CACAGCAGGTGCAACAGG------TGATGAGCAGCAGTC---------AGGTGCGGGTGTGGGTCTGGGTCTGGGCTTGGGTGTTGC---TGCCACGCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCGCAGCG---CCACAGAGGATCTGCTGGACACCACGCAACAGGTGATC---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTCACGCTGCGCAACTTTGCCGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................CTTGAACGACTTCCAGGC---GCTCACG..................	25	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................TGCCACGCGTTCGCTTGCC---------TC---CT.............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................GGGTCTGGGCTTGGGTGTTGC---TG..............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droGri2

TCGTGGATTGGCGGCCAGCAATATTAGC---AGTGACAGCGC---CAGTGACTTG-------------------------AGTGGTGAGCTAATCT---ACACAAATCCACAATCCTCCAATCCAAACCAGACATCATCATCATCATCAGCAGCAGCAGCAGCGGT------------------------------------------------------------------TGTTGTTGGTTCGCTTGCC---------TCAAACTCGC---ACTCGAATTCCATACAGGATCTGATGCTGAGCG---CAACGGAGGATTTGCTGGACACCACACAGCAGGTGATC---------GAGACCAATCAGCATTCCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTTACCATGCTCAATTTTGTCGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................................................................................................................................................CCACACAGCAGGTGATC---------GAGACCA.............................................................................	24	1	1.00	1	1	0
..................................................................................................................................................TCAGCAGCAGCAGCAGCG....................................................................................................................................................................................................................................................................................	18	20	0.10	2	2	0
..................................................................................................................................................TCAGCAGCAGCAGCAGCGG...................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0

-17.4	-16.7	-16.7	-16.5

dsi_3161

3l:19283410-19283559 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads