ID:

dsi_3159

 Coordinate:

3r:4707857-4708006 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.2 -17.8 -17.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGTGCAAACTGTGAACTGATTTGAAAAAAATGTTGTGATTAAGTGCTAGTTAAGTGAGATAAAACTACCTTATCGGTATTGCGATAAGAAACATTTCTGTCACTCACCCAATTCCAACTTATCAACAACGCTCAATATTAATTTTTGTGATTTCCCCGAAAATCAAACTAATTTTTACATTGACTTACCTTTATTGCAGTTTCCCAAAACCTGGGTCGCGATTCATATCGGACCTTCAACCCGGAATTG
**************************************************...(((((...........(((((((......)))))))...........)))))...........................(((((...((((....((((((......))))))....)))).....)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O002
Head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
...............................................................................................................................................................................................................AAACCTGGGGCGCGA............................ 15 1 2 8.00 16 8 5 3 0 0 0 0 0
.............................................................................................................................................................................................................CAAAACCTGGGGCGCGA............................ 17 1 1 5.00 5 1 2 2 0 0 0 0 0
..............................................................................................................................................................................................................AAAACCTGGGGCGCGA............................ 16 1 1 4.00 4 1 1 2 0 0 0 0 0
.......................................................................TATCGGTATTGCGATAAG................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................CAAAACCTGGGGCGCG............................. 16 1 3 1.00 3 0 2 1 0 0 0 0 0
..........TGTTAACTGATCTGAAAAAAA........................................................................................................................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0 0
..........TGTGGACGGATTTGAAAAA............................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................AAAACCTGGGGCGCG............................. 15 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................................................AATATTAATTTTGGTGATT................................................................................................. 19 1 9 0.22 2 0 0 0 0 2 0 0 0
.......................................................................................................................................ATATTAATTTTGGTGATT................................................................................................. 18 1 10 0.20 2 0 0 0 0 2 0 0 0
......................................ATTAAGTGCTAGTTGA.................................................................................................................................................................................................... 16 1 8 0.13 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................GCAAAACCTGGGGCGCG............................. 17 2 8 0.13 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................AAAACCTGGGGCGCGAG........................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0
..........................................AATGCTAGTTAAGTGGGA.............................................................................................................................................................................................. 18 2 11 0.09 1 0 0 0 0 0 1 0 0
......................................................................................................................................AATATTAATTTTGGTGA................................................................................................... 17 1 14 0.07 1 0 0 0 0 0 0 1 0
............CGAACTGATCTGAAAAAA............................................................................................................................................................................................................................ 18 2 15 0.07 1 1 0 0 0 0 0 0 0
..........CGTGGACTGTTTTGAAAAA............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..........TATGAACTCATTTGAAAAA............................................................................................................................................................................................................................. 19 2 20 0.05 1 0 1 0 0 0 0 0 0
........ACTGCGAACTGATTT................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTCACGTTTGACACTTGACTAAACTTTTTTTACAACACTAATTCACGATCAATTCACTCTATTTTGATGGAATAGCCATAACGCTATTCTTTGTAAAGACAGTGAGTGGGTTAAGGTTGAATAGTTGTTGCGAGTTATAATTAAAAACACTAAAGGGGCTTTTAGTTTGATTAAAAATGTAACTGAATGGAAATAACGTCAAAGGGTTTTGGACCCAGCGCTAAGTATAGCCTGGAAGTTGGGCCTTAAC
**************************************************...(((((...........(((((((......)))))))...........)))))...........................(((((...((((....((((((......))))))....)))).....)))))................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
...............................CCAACACTGATTCAGGATCA....................................................................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0 0
......................................................................................................TGATTGGGTTCAGGTTGA.................................................................................................................................. 18 2 10 0.20 2 2 0 0 0 0
..................................................................................................................................................................................................................................ATGGCATGGAAGTTGG........ 16 2 18 0.11 2 0 0 1 0 1
..............TTGACTAAGTTTTTTTAACAA....................................................................................................................................................................................................................... 21 3 20 0.10 2 0 2 0 0 0
................................................................................................................................................................................................................................ATAGAGGCTGGAAGTTGGG....... 19 3 11 0.09 1 0 0 0 1 0
......................................................TACTCTATTTTCATGGCAT................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0
......................................................................................................TGAGTGGGTACAGGTTG................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 10:23 AM