ID:

dsi_3154

Coordinate:

2r:5183235-5183384 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCATCGTCATTGAACTCGATTGAAATTCAATAAATTACACAGACAGACGGACGGGAAGGAGCCAAAGGCCCTGACTGACTAGCGCAGATTGTCAATTTTCTGATAGGGCGAGCGGGCAAGCGGCAAAGTCGGCGAAGTCGTCCCTGGCAGGCGTGAAACCATAAACCCATTTAACTCCTATTCGATCAATCCCTCCGCAGGCCTCAGCGGCGACGAGTTCCGCTTCGACGGGAACGGCGACGGTCCGGCC ************************************************.(((..(((.(((...))))))..)))....(((..(((((((.....((((.((((((((....((..((......))..))....))).))))).)))).(((....))).....................)).)))))....)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head
............................................AGCCGGACGGGAAGG...............................................................................................................................................................................................	15	1	7	4.29	30	22	6	0	0	1	1	0
.........TTGAACTCGATTGAA..................................................................................................................................................................................................................................	15	0	4	0.25	1	0	0	0	1	0	0	0
............................................................................................................................ACGGTCGGCGAAGTCGTC............................................................................................................	18	2	4	0.25	1	0	0	1	0	0	0	0
....................................ACCTAGACAGCCGGACGGG...................................................................................................................................................................................................	19	3	8	0.13	1	0	0	1	0	0	0	0
.......CATTGAACTGGATTGAA..................................................................................................................................................................................................................................	17	1	9	0.11	1	0	0	0	0	1	0	0
...............................................................................................................................GTCGGCGAAGTCTTC............................................................................................................	15	1	10	0.10	1	0	1	0	0	0	0	0
............................................................................................................................................................................AACTCCTATTCGGCCCATC...........................................................	19	3	15	0.07	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................ACTGGAACTGAGACGGTCC....	19	3	20	0.05	1	0	0	0	0	0	1	0
............................................AGCCGGACGGGAAGGTG.............................................................................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0
...TAGTAATTGAACTGGATTGA...................................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0	0
...........................................................................................................................AACGGTCGGCGAAGTCGTC............................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

AGTAGCAGTAACTTGAGCTAACTTTAAGTTATTTAATGTGTCTGTCTGCCTGCCCTTCCTCGGTTTCCGGGACTGACTGATCGCGTCTAACAGTTAAAAGACTATCCCGCTCGCCCGTTCGCCGTTTCAGCCGCTTCAGCAGGGACCGTCCGCACTTTGGTATTTGGGTAAATTGAGGATAAGCTAGTTAGGGAGGCGTCCGGAGTCGCCGCTGCTCAAGGCGAAGCTGCCCTTGCCGCTGCCAGGCCGG ************************************************.(((..(((.(((...))))))..)))....(((..(((((((.....((((.((((((((....((..((......))..))....))).))))).)))).(((....))).....................)).)))))....)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body	M023 head	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
..................................................................................................................................................................................................GGCTTCCGGAGTAGCCTCTGCT..................................	22	3	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................CAGGATAAGATAGTTAGG..........................................................	18	2	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................................................................................................CTCAAACCGAAGCTGCCC..................	18	2	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................................TTAGGTAGGCTTCCGTAGTC...........................................	20	3	11	0.27	3	0	2	1	0	0	0
.................................................................................................................................................CCGTCCGCAGTCTGGGAT.......................................................................................	18	3	20	0.15	3	0	0	3	0	0	0
.....................................................................................................................................................................................................................CCTCAAACCGAAGCTGCCC..................	19	3	18	0.11	2	2	0	0	0	0	0
...AGTAGTAACTTGAGATA......................................................................................................................................................................................................................................	17	2	19	0.11	2	0	0	0	2	0	0
....................................................................................................................................................TCCGCAAGTTGGTATTAGG...................................................................................	19	3	16	0.06	1	0	0	1	0	0	0
...............................................GCCTGCCCTTGCTTAGTTT........................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
................................................................................................AAAGACTATGCCGCA...........................................................................................................................................	15	2	20	0.05	1	0	0	0	0	1	0
........................................................................................................................................................................................................................CAAACCGAAGCTGCCC..................	16	2	20	0.05	1	1	0	0	0	0	0

Generated: 04/23/2015 at 11:40 AM