ID:

dsi_3135

 Coordinate:

3l:11673461-11673645 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.7 -36.6

Flybase annnotation

five_prime_UTR [3l_11673646_11673663_+]; CDS [3l_11673664_11676060_+]; three_prime_UTR [3l_11673274_11673460_+]; exon [3l_11672476_11673460_+]; exon [3l_11673646_11676060_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCTAACCATATATGCGCTACAATAAATTCAAAATAGATGAATTACAAACATTTCGGCTTTTTATTATGTGTGCCTATAGAATGGAACATGTGGATATGGGCTTTTTTCAGAAATGAAGATATAACTATGATTTAAAGCGCATATTATTTAGTCGGCTAACCAAAAATAATGTGTGATGTGATATGTGGGACAGATTATTTTGGTTAAAAATAATACTCCTTCCTTCCGTTCCAGATTTGTATCTCGAATGAAATGCGCTCGGTACCAGCGAACTGTTCCCAGTA
**************************************************.....(((..............))).......((((((....((((((((....((((((....)))))).....)))))........((((((((((((....((....))..))))))))))))...........((((...((((((((.....))))))))..)))))))....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................TGTGATGTGACGTGTGGAACA............................................................................................ 21 3 2 38.00 76 41 26 0 8 0 0 1 0 0 0 0
............................................................................................................................................................................TGTGATGTGACGTGTGGAAC............................................................................................. 20 3 4 24.25 97 55 38 0 3 0 0 1 0 0 0 0
.........................................................................................................................................................................................GTGGGACAGATGATTAGGGT................................................................................ 20 3 5 12.40 62 0 0 42 0 12 0 0 4 3 1 0
............................................................................................................................................................................TGTGATGTGACTTGTGGAAC............................................................................................. 20 3 4 2.00 8 2 6 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTGATGTGATTAGTGGAAC............................................................................................. 20 3 6 2.00 12 5 7 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTGATGTGACGTGTGGAA.............................................................................................. 19 3 20 1.85 37 23 11 0 3 0 0 0 0 0 0 0
............................................................................................................................................................................TGTGATGTGATTAGTGGAACA............................................................................................ 21 3 3 1.33 4 4 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTGATGTGACATGTGGAAC............................................................................................. 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................GCGCATATTATTTAGTCGGCTAAC............................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................GGGACAGATTATTAGGGT................................................................................ 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTGATGTGACTTGTGGAACA............................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TGTATCTAGAATGAA................................ 15 1 15 0.53 8 1 0 0 7 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTGGGACAGATGATTGGGGT................................................................................ 20 3 6 0.33 2 0 1 0 0 0 0 0 0 0 0 1
..................TACAATTAATTCAAAAAAGA....................................................................................................................................................................................................................................................... 20 2 10 0.20 2 0 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................TATGATTGAAAGCGCGTACT........................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATGTGGGACAGATGAT...................................................................................... 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTGATGTGACAAGTGGAAC............................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GCGGACTGTCCCCAGT. 16 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
...............................................................................................................................................................................................................................................GTATCTAGAATGAAA............................... 15 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTGGGACAGATTTTGGTGGT................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................GCAGATACGGGCTTTTTTC................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TGATGATATAACTAT............................................................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................TGTGTGCCTATAGCGTCG........................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GAGATTGGTATATACGCGATGTTATTTAAGTTTTATCTACTTAATGTTTGTAAAGCCGAAAAATAATACACACGGATATCTTACCTTGTACACCTATACCCGAAAAAAGTCTTTACTTCTATATTGATACTAAATTTCGCGTATAATAAATCAGCCGATTGGTTTTTATTACACACTACACTATACACCCTGTCTAATAAAACCAATTTTTATTATGAGGAAGGAAGGCAAGGTCTAAACATAGAGCTTACTTTACGCGAGCCATGGTCGCTTGACAAGGGTCAT
**************************************************.....(((..............))).......((((((....((((((((....((((((....)))))).....)))))........((((((((((((....((....))..))))))))))))...........((((...((((((((.....))))))))..)))))))....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................CTTGCCTTGTACACCTCTA........................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0
...............................................................................................................................................................................................................TTTTGTGATGAGGAAGGA............................................................ 18 2 6 0.17 1 1 0 0 0 0
................................................................................................................................................................................................................................................AAAGGGCTTACTTCACGCGA......................... 20 3 8 0.13 1 0 1 0 0 0
.............ACGCGAGGTTATATAAGT.............................................................................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 1 0 0
...............................................................................................................................................................................................................TTTTATTCTGAGGAA............................................................... 15 1 14 0.07 1 0 1 0 0 0
.........................................................................................................................................................................................................................AGGAAGGAGGGCTAGATCT................................................. 19 3 20 0.05 1 0 0 0 0 1
....................................................................................................................................................................................................................TTATGAGGAAGGTAGACTA...................................................... 19 3 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:35 AM