ID:

dsi_3118

 Coordinate:

3l:843939-844088 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGCCAAGCATTCCGTCAGTGATCGTTGGAGTTCTAAGCATTTAGCTTCAATTGGCATCAATTATGTTGATTTTGTAAATTAGTTTGCATGCGGCAATTGAATTTCTTCTCACATTTCAACAGCGGGTGCTGGGAAATTGCCATTTAAGGTCAGAGTAAAAGCTTTTATTGATTGTAATCAACTTTCTTGCTCTTTGCAGCTGACAAGAGTTTGACACAGAACAACAACGAGGTGGTGGCCTTGGATGAG
**************************************************..((((((((((..(((((....((((((....))))))..))))))))))............(((((..((((....)))).))))))))))......((.((((((((((......(((((....))))))))..)))))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902009
testis
...................................................................................................................................................................................................................TTGACACAGAACAACAACGAGGTGGT............. 26 0 1 2.00 2 1 1 0 0 0 0
....................................................................................................................................................................................................................TGACACAGAACAACAACGAGGTGGTGG........... 27 0 1 2.00 2 1 0 0 1 0 0
..................................................................................................................................................................................................................................AACGAGGTGGTGGCCTTGGATGAG 24 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................................................TGACACAGAACAACAACGAGGTGGTGGC.......... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................TGACACAGAACAACAACGAGGTGGT............. 25 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................................TTGACACAGAACAACAACGAGGTGGTGGC.......... 29 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................CAACAACGAGGTGGTGGCCTTGG..... 23 0 1 1.00 1 0 0 0 0 1 0
.........................................................................................................................................................................................................TGACAAGAGTTTGACACAGAACAACAA...................... 27 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................TGACAAGAGTTTGACACA............................... 18 0 1 1.00 1 0 0 1 0 0 0
................................................................................TGGTTTGTATGCGGCAATTG...................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1
...................................................................TGTTTTTGTGAATAAGTTTGCAT................................................................................................................................................................ 23 3 4 0.25 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................ACCGAGGTGGTGGAATTGGA.... 20 3 16 0.06 1 0 0 0 0 0 1
.............................................................................AATTAGTTTGCATGCA............................................................................................................................................................. 16 1 17 0.06 1 0 1 0 0 0 0
.........................................................................TGTAAATTCGTTTGC.................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GTCGGTTCGTAAGGCAGTCACTAGCAACCTCAAGATTCGTAAATCGAAGTTAACCGTAGTTAATACAACTAAAACATTTAATCAAACGTACGCCGTTAACTTAAAGAAGAGTGTAAAGTTGTCGCCCACGACCCTTTAACGGTAAATTCCAGTCTCATTTTCGAAAATAACTAACATTAGTTGAAAGAACGAGAAACGTCGACTGTTCTCAAACTGTGTCTTGTTGTTGCTCCACCACCGGAACCTACTC
**************************************************..((((((((((..(((((....((((((....))))))..))))))))))............(((((..((((....)))).))))))))))......((.((((((((((......(((((....))))))))..)))))))..))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR1275485
Male prepupae		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M053
female body
..............CAGTCTCTAGCAACCTGA.......................................................................................................................................................................................................................... 18 2 1 3.00 3 3 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCGACTGTTCTCAAACTG.................................. 18 1 1 1.00 1 0 0 1 0 0 0 0 0
.............CCAGTCTCTAGCAACCTGA.......................................................................................................................................................................................................................... 19 3 16 0.56 9 8 0 1 0 0 0 0 0
................GTCACTAGCAGCCTGA.......................................................................................................................................................................................................................... 16 2 20 0.40 8 0 8 0 0 0 0 0 0
........................................................................................TAGGCAGTTAACTTAAAGCAG............................................................................................................................................. 21 3 8 0.38 3 3 0 0 0 0 0 0 0
................GTCACTAGCAGCCTGAACA....................................................................................................................................................................................................................... 19 3 12 0.25 3 0 3 0 0 0 0 0 0
.............CCAGTCTCTAGCAACCTG........................................................................................................................................................................................................................... 18 3 20 0.20 4 4 0 0 0 0 0 0 0
.................TCACTAGCAGCCTCA.......................................................................................................................................................................................................................... 15 1 5 0.20 1 0 1 0 0 0 0 0 0
................GTCACTAGCAGCCTGAA......................................................................................................................................................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0
................GTCACTAGCAGCCTCAC......................................................................................................................................................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0
.........TAAACCAGTCTCTAGCAACC............................................................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0 0 0 0
...............AGTCACTAGCAGCCTGA.......................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0
......................................................................................................................................................AGGCTTATTTTTGAAAATAAC............................................................................... 21 3 11 0.09 1 0 0 0 1 0 0 0 0
..........................ACCTCAAGATTAGTAAG............................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1 0 0
...............AGTCTCTAGCAACCTGATG........................................................................................................................................................................................................................ 19 3 14 0.07 1 1 0 0 0 0 0 0 0
.............GCAGCCACTAGCAGCCT............................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 0 1 0
...............CGGCACTAGCAAGCTCAAG........................................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 1
.............GAAGTCACTAGCCTCCTC........................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:843889-844138 + dsi_3118 CAGCCA------AGCATTCCG--TCAG-----------TGATCGTTGGA-------GTTCTAAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---CTGACAAGAGTTTGACACAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAG
droSec2 scaffold_2:907723-907972 + CAGCCA------AGCATTCCG--TCAG-----------TGATCGCTGGA-------GTTCTAAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---CTGACAAGAGTTTGACACAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAG
dm3 chr3L:888097-888346 + CAGCCA------AGCATTCCG--TCAG-----------TGATCGTTGGA-------GTTCTAAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---CTGACAAGAGTTTGACACAGAACAACAA------------------------------------CGA---AGTGGTGGCCTTGGATGAA
droEre2 scaffold_4784:895161-895394 + CAG-----------------------------------TGATCATTGGA-------GTTCTAAGC-------------ATTTGGCT--TCAATTGGCATCAATTATGT------TGATTTGGTAAATTTGTTTGC----------ATGC--GG-----CAATTGAATTTCATCTC-ACAT-TTCAATAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---TTGACAAGAGTTTGACAAAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGACGAA
droYak3 3L:867405-867654 + CAGCCA------AACATTCCG--TCAG-----------TGATCGTTGAA-------GTTCTAAGC-------------ATTTGGCT--TCAATTGGCATCAATTATGT------TGATTTGGTAAATTTGTTTGT----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAATAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-ATGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---TTGACAAGAGTTTGACAAAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAA
droEug1 scf7180000409184:915467-915719 + CAACCAT-CAGTAGCATTCTT--TCAG-----------TGCTTGCTGAACATGCTTGCTCTTAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGT------AGATCTCGTAAATTAGTTTGC----------ATGC--GG-----CAATTGGATATCTGGTC-TTAC-TTGAA----GG-------------------------GTGG--TGGGA-------A----------------------------TT--C------CATT-TAAGGTCA-AAGTAAAAGCACTTATTGAT-----------------------------------------------TGCAATTT----TCGTTC------TCG----CTTC-------------TTACAG---CTGACAAGGGCTTGACAAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGATGAA
droBia1 scf7180000300910:981505-981750 + CAGTGA------CACATTTCT--TCAG-----------TGGTCGTTGAA-------GTTACTAGC-------------ATTTGGCA--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------AGCC--AG-----CAATTGAATTTCTTCTC-ATAT-TTCAACAGCGC-------------------------G-GC--TGGGA-------A----------------------------ATTCG------CATT-TAAGGTCA-AAGTAAAAGCTTTTATTGAT-----------------------------------------------TCTAATTC----GCCCTC------CTG----CCTT-------------TTCCAG---TTGACAAGAGTTTGACTAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGATGAA
droTak1 scf7180000415111:223344-223615 - ATGT--------GACATTCCTTCTCGC-----------TGCTCGTTGAA-------GTTATTAGC-------------ATTTATCA--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGT----------ATGC--AG-----CAATTGAATTTCTTCTC-ATAT-TTCAAAAGCAACTAG-----------------GCTTCTGC--TGGGA-------A----------------------------ATTCA------CATTTTGAGGTCA-AAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATTT----GCCTTC------TTCTTTGCATT-------------TTCCAG---TTGACAAGAGTTTGACGACCAACAACAACAA---CGAA---G------------------------TGGTGGTGGTGGCCTTGGATGAA
droEle1 scf7180000491249:4811923-4812182 - TTGCCATCCAGCAACATTCCC--TCAG-----------ATCTCGTTGAA-------GTTATCAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGA------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ATAT-TTCAAAAGCAA-------------------------CTGC--TGGAA-------A----------------------------ATGCT------CATT-TAGGGCCA-AAGTAAAAGTTTTTATTGAT-----------------------------------------------TTTAATTT----ACCTTC------TTGGTTTCGTT-------------TTGCAG---TTGAAAAGAGTTTGATAAACAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAA
droRho1 scf7180000780079:359000-359244 - CAGC--------AACATTCCT--TCGG-----------AGCTTGTTGAA-------GTTATCAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGA------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ATAT-TTCAAAAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATGCT------CATT-TAGGGTCA-GAGTAAAAACTTTTATTGAT-----------------------------------------------TGTAATTT----ACTTTC------TTG----CTCT-------------TTGCAG---TTGACAAGAGTTTGATAAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGAAGAA
droFic1 scf7180000454113:1195316-1195573 - CAGC--------AACATTCCT--TCGG-----------AGCTCGTTAAA-------GTTTTAAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGA------TAATTTTGTAAATTAGTTTGC----------ATGT--GG-----CAATTGAAATGTTTCTC-ATAT-TTCAA-AGCGT-------------------------CTGC--TGCGA-------A----------------------------GTTCTTACTCGTATT-TAAGGTCA-GAGTGAAAGCTTTTATTGAT-----------------------------------------------TGCAATTT----CCTTTC------TTT----CTTC-----TTGCGCTTTTCCAG---TTGAGAAGAGTGTGGTAAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGATGAA
droKik1 scf7180000302388:372533-372779 + AGCCGC------AACATTCCG--AGGC-----------AGCTTGTTGAA-------GTTATTATC-------------ATTTAGCATTTCAATTGGCATCAATTATG---------ATATTGTAAATTAGTTTGC----------AAGC--GG-----CAATTGAATTTTTACTT-ATATATTCAA--------------------------------------GGGG-------C----------------------------TTTGC---T--CATT-TAAGGTCTGGAATAAAAGCTTTTATTGATTGT-T-------------------------------TGTTTAT---------TTC----TGGCTC------TTT----TTTT-------------TTGCAG---TGGACAAGAATTTGATAAATAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAG
droAna3 scaffold_13337:7029635-7029871 - GAGAGA------TGACTTTCA--TTAT-----------GGGGCGACAAA-------GTTATTAGCATACGGGTATGGCATTTAGCT--TCAATTGGCGCCAATTACGA------TGACTTTGTAAATTGTTTAGC----------GGCC--AG-----CAATTGAATTTAGAGCC-ATGC-ACCA-----------------------------------C--TGGA------------------------------------------------------------------AGAATCTCTTTTTAAT-GGAAAAT------------------------------------------GTATA----TGTTTC------TTG----TCCC-------------TTTCAG---CTGATAAAAACTTGATAAACAACAACAA------------------------------------GGAGGCGGTGGTGGCCCTGGAGGAG
droBip1 scf7180000396418:32918-33134 - GA--TA----------TTCAT--T-ATGGTTATGATAGGGGCGATTGGA-------GTTATTAGCATACGAGCCTGGCACTTAGCT--TCAATTGGCGCCAATTACGA------TGGCTCTGTAAATTGTTTTGCGGTGAT--CTGTGA--TG-----GGATAGAGTTTT-----------------------------------------------------------------------------------------------------------------------------------TTTTTAAT-GGA-------------------------------------------A--AATTG----GTTTTT------TTC----TTCG-------------TTCCAG---CTGACAAAAACCTGATCAACAACAACAC------------------------------------AGA---GGCGGTGGTCCTGGAGGAT
dp5 XR_group6:6488878-6489081 + C-----------------------------------------------------------------------------GTTTAGCAT-TCAATTGGCATCAATTATGGGAATAGGGATATTGTAAATTAGTTTGTGGCATGTGGTATGT--GG-----CAATTGAATTTTTCGTCGAGAG-ATCAACAC----------------------------------AAGA-----------------------------A------------------------------------AATGTCTTTTACTTAT--------------------------------------------------GCTTT----ATTTTCGTTTTCCTT---TC-AT-------------TTTCAGTCGTGGAGAAGAATTTGATGAACAATAATAA------------------------------------TGA---A---GTTCCTTTGGAGAAT
droPer2 scaffold_82:108795-108998 - C-----------------------------------------------------------------------------GTTTAGCAT-TCAATTGGCATCAATTATGGGAATAGGGATATTGTAAATTAGTTTGTGGCATGTGGTATGA--GG-----CAATTGAATTTTTCGTCGAGAG-ATCAACAC----------------------------------AAGA-----------------------------A------------------------------------AATGTCTTTTACTTAT--------------------------------------------------GTTTT----ATTTTCGTTTTCCTT---TC-AT-------------TTTCAGTCGTGGAGAAGAATTTGATGAACAATAATAA------------------------------------TGA---A---GTTCCTTTGGAGAAT
droWil2 scf2_1100000004511:5595000-5595195 + -------------------------------------------GTTGAA-------GTTATTAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGA------TGATATTGTAAATTATTTTGT----------ATGCT-GG-----CAATTGAATTTT-------------------------------------------------GT--TG-----------------------------------------------------------------------AGTTTTCATTAAA-----------------------------------------------CA---TT---------TGGTTCCCCTT---TC-TTTTTATATATA-TATTACAG---TAGACAACAATTTGCTAAACAATAATAATAA---CAAC---GA---------------------TAA---GGAAGTGGCCTTGGATGAG
droVir3 scaffold_13049:15440012-15440306 + dvi_20082 ------------------------------------------------------------------------------ATATGACA--TCAATTGGTATCAATTATGA------AGATATTGTAAATTATTTTGT----------GTATTATGCACAACAATTGGGCGTATTTT--GTGT-AGCTATAGAAA-------------------------CCAC--AAC---------A----GAT-------------A-------AAACT----CAAGTG-GATAAAAA-AGGGGGGAATTTTTGTTGGATGCAGAGGCTATGTTTTTTATTTTATTTTGAGAGTTTACTGAA----CACAG--G----AAATTC------TTC----TCTT-------------TTACAG---TTGATAAAACGCTGCTCACCACCAACAACAATAATAACAACAACAATAACATCAGCAGCTCGAACGA------GTCAGCTTTGGATGAA
droMoj3 scaffold_6680:21417518-21417766 - C-----------------------------------------------------------------------------ATTTGACA--TCAATTGGTATCAATTATGC------AGGCAATGGAAATTATTTTGT----------ATGC--TC-ACAGCAAATTGGTGTATTAT--GTGC-CCCAAGAGAGA-------------------------GTG-----AGA-------G---AGG-GAGAGAGGGTTTAGGGGGCCTTTTGC---T--CATT-TG-------------------------AACAG-T-------------------------------TGCTCATTAATTGAAATT-------------------C----TCTT-------------TTACAG---TTAATAAAACGCTGCTCACCAACAACAACAA---CAACAACAACAATAACAATAAGAGCAACAACGA------GCTGACTTTGGAGGAG
droGri2 scaffold_15110:17212842-17213128 + C-----------------------------------------------------------------------------ATTTAACA--TCAATTGGTATCAATTATGA------TGATATTGTAAATTATTTTGT----------ATATGCTGCAAACCAATTTAGC---ATCTT-AAGT----------ATCTAGTTGATTATGCCGTTTTTGTTTCTGCTCTCAGAAAGGTCAACTT------------------GCGGCA-T------------TT-GACCCACA-GATAAAACTTTTCTATTTAATGTAT-------------------------------TATTCAT----GTTCAACAACGGAAACTC------TCT----TTCC-------------TTACAG---TTGATAAGACGCTGCTCACCAACAACAACAA---CAAC---AACAATAACAATATCAACACAAATGA------GTCGGCTGTGGATGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCCA------AGCATTCCG--TCAG-----------TGATCGTTGGA-------GTTCTAAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---CTGACAAGAGTTTGACACAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACAGAACAACAA------------------------------------CGA---GGTGGT.............2612.00200000010010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAACAACAA------------------------------------CGA---GGTGGTGG...........2712.00200000010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------CGA---GGTGGTGGCCTTGGATGAG2411.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAACAACAA------------------------------------CGA---GGTGGTGGC..........2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAACAACAA------------------------------------CGA---GGTGGT.............2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACAGAACAACAA------------------------------------CGA---GGTGGTGGC..........2911.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAA------------------------------------CGA---GGTGGTGGCCTTGG.....2311.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGAGTTTGACACAGAACAACAA------------------------------------.........................2711.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGAGTTTGACACA......................................................................1811.00100000000000100000
............................................................................................................................AATTAGTTTGC----------ATGC--A..............................................................................................................................................................................................................................................................................................................................................................16170.06100000000010000000
droSec2
CAGCCA------AGCATTCCG--TCAG-----------TGATCGCTGGA-------GTTCTAAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---CTGACAAGAGTTTGACACAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAACAACAA------------------------------------CGA---GGT................2111.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAACAACAA------------------------------------CGA---G..................1911.0010010
dm3
CAGCCA------AGCATTCCG--TCAG-----------TGATCGTTGGA-------GTTCTAAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---CTGACAAGAGTTTGACACAGAACAACAA------------------------------------CGA---AGTGGTGGCCTTGGATGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAACAACAA------------------------------------CGA---AGTGGTG............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGC...........................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACAGAACAACAA------------------------------------CGA---AGTGG..............2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTTGACACAGAACAACAA------------------------------------CGA---A..................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................T-TTCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------...................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACAGAACAACAA------------------------------------CGA---AGTGGT.............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAAGAGTTTGACACAGAAC..................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TCAACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------...................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTTTGACACAGAAC..................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTGC------CATT-TAAGGTCA-GAGTAAAAGC...........................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACAGAACAACAA------------------------------------CGA---AGTGGTG............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTTTGACACAGAACAA................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------...................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATTGC------CATT-TAAGGTCA-GAGTAAAAGC...........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACAGAACAACAA------------------------------------CGA---A..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTCCG--TCAG-----------TGATCGTTGGA-------GTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACAACAA------------------------------------CGA---AGTGGTGGCC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------CGA---AGTGGTGGCCTTGGATG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAAGAGTTTGACACAGAACA.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTTTGACACAGAACAACAA------------------------------------CG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ATTGAATTTCTTCTC-ACAT-TTCAACAGCGG-------------------------.............................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TTCTC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------...........................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA------------------------------------CGA---AGTGGTGGCCTTGGA....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGAGTTTGACACAGAACAACAA------------------------------------C........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAGAGTTTGACACAGA....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTA..............................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------CGA---AGTGGTGGCCTTGGC....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CA------AGCATTCCG--TCAG-----------TGATCGTTGGA-------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAACAACAA------------------------------------CGA---AGTGGTGGCC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGAGTTTGACACAGAACAA................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATTCCG--TCAG-----------TGATCGTTGGA-------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA------------------------------------CGA---AGTGGTG............1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------CGA---AGTGGTGGCCTTGGA....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TT-TAAGGTCA-GAGTAAAAGCTTTTATT....................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTTGACACAGAACAACAA------------------------------------CGA---...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAACAACAA------------------------------------CGA---AGTGGTGG...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------------------------CGA---AGTGGTGGCCTTGGATG..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....A------AGCATTCCG--TCAG-----------TGATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACAGAACAACAA------------------------------------CGA---AGTGG..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAACAACAA------------------------------------CGA---AGTGGTGGC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTGACACAGAACAACAA------------------------------------CGA---AGT................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAGTTTGACACAGAACAACAA------------------------------------CGA---...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---AGTGGTGGCCTTGGA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ACAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-..............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACAGAACAACAA------------------------------------CGA---AGTGGTG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TC-ACAT-TTCAACAGCGG-------------------------GTGC--TGGGA-------...........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAG-----------------------------------TGATCATTGGA-------GTTCTAAGC-------------ATTTGGCT--TCAATTGGCATCAATTATGT------TGATTTGGTAAATTTGTTTGC----------ATGC--GG-----CAATTGAATTTCATCTC-ACAT-TTCAATAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-GAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---TTGACAAGAGTTTGACAAAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGACGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................TGATCATTGGA-------GTTCTAAGC-------------ATTTGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAAGAACAACAA------------------------------------CGA---GGTGGTGG...........2811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA------------------------------------CGA---GGTGGTGGCCTTG......2311.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGAGTTTGACAAAGA....................................................................1911.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAAGAACAACAA------------------------------------CGA---GGTGGT.............2611.0010000010
droYak3
CAGCCA------AACATTCCG--TCAG-----------TGATCGTTGAA-------GTTCTAAGC-------------ATTTGGCT--TCAATTGGCATCAATTATGT------TGATTTGGTAAATTTGTTTGT----------ATGC--GG-----CAATTGAATTTCTTCTC-ACAT-TTCAATAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATTGC------CATT-TAAGGTCA-ATGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATCA----ACTTTC------TTG----CTCT-------------TTGCAG---TTGACAAGAGTTTGACAAAGAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................T--TCAATTGGCATCAATTATGT------TGATT...............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACAA------------------------------------CGA---GGTGGTGGCCTTG......2511.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAAGAACAACAA------------------------------------CGA---GGT................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................TAATCA----ACTTTC------TTG----CTCT-------------TTGCA.............................................................................................2411.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAAAGAACAACAA------------------------------------CGA---GGTGGT.............2611.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACAACAA------------------------------------CGA---GGTGGTGGC..........2311.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGAGTTTGACAAAGAA...................................................................1911.00100000010000
droEug1
CAACCAT-CAGTAGCATTCTT--TCAG-----------TGCTTGCTGAACATGCTTGCTCTTAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGT------AGATCTCGTAAATTAGTTTGC----------ATGC--GG-----CAATTGGATATCTGGTC-TTAC-TTGAA----GG-------------------------GTGG--TGGGA-------A----------------------------TT--C------CATT-TAAGGTCA-AAGTAAAAGCACTTATTGAT-----------------------------------------------TGCAATTT----TCGTTC------TCG----CTTC-------------TTACAG---CTGACAAGGGCTTGACAAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGATGAASizeHit CountTotal NormTotal
No Reads
droBia1
CAGTGA------CACATTTCT--TCAG-----------TGGTCGTTGAA-------GTTACTAGC-------------ATTTGGCA--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGC----------AGCC--AG-----CAATTGAATTTCTTCTC-ATAT-TTCAACAGCGC-------------------------G-GC--TGGGA-------A----------------------------ATTCG------CATT-TAAGGTCA-AAGTAAAAGCTTTTATTGAT-----------------------------------------------TCTAATTC----GCCCTC------CTG----CCTT-------------TTCCAG---TTGACAAGAGTTTGACTAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGATGAASizeHit CountTotal NormTotal
No Reads
droTak1
ATGT--------GACATTCCTTCTCGC-----------TGCTCGTTGAA-------GTTATTAGC-------------ATTTATCA--TCAATTGGCATCAATTATGT------TGATTTTGTAAATTAGTTTGT----------ATGC--AG-----CAATTGAATTTCTTCTC-ATAT-TTCAAAAGCAACTAG-----------------GCTTCTGC--TGGGA-------A----------------------------ATTCA------CATTTTGAGGTCA-AAGTAAAAGCTTTTATTGAT-----------------------------------------------TGTAATTT----GCCTTC------TTCTTTGCATT-------------TTCCAG---TTGACAAGAGTTTGACGACCAACAACAACAA---CGAA---G------------------------TGGTGGTGGTGGCCTTGGATGAASizeHit CountTotal NormTotal
No Reads
droEle1
TTGCCATCCAGCAACATTCCC--TCAG-----------ATCTCGTTGAA-------GTTATCAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGA------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ATAT-TTCAAAAGCAA-------------------------CTGC--TGGAA-------A----------------------------ATGCT------CATT-TAGGGCCA-AAGTAAAAGTTTTTATTGAT-----------------------------------------------TTTAATTT----ACCTTC------TTGGTTTCGTT-------------TTGCAG---TTGAAAAGAGTTTGATAAACAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAASizeHit CountTotal NormTotal
No Reads
droRho1
CAGC--------AACATTCCT--TCGG-----------AGCTTGTTGAA-------GTTATCAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGA------TGATTTTGTAAATTAGTTTGC----------ATGC--GG-----CAATTGAATTTCTTCTC-ATAT-TTCAAAAGCGG-------------------------GTGC--TGGGA-------A----------------------------ATGCT------CATT-TAGGGTCA-GAGTAAAAACTTTTATTGAT-----------------------------------------------TGTAATTT----ACTTTC------TTG----CTCT-------------TTGCAG---TTGACAAGAGTTTGATAAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGAAGAASizeHit CountTotal NormTotal
No Reads
droFic1
CAGC--------AACATTCCT--TCGG-----------AGCTCGTTAAA-------GTTTTAAGC-------------ATTTAGCA--TCAATTGGCATCAATTATGA------TAATTTTGTAAATTAGTTTGC----------ATGT--GG-----CAATTGAAATGTTTCTC-ATAT-TTCAA-AGCGT-------------------------CTGC--TGCGA-------A----------------------------GTTCTTACTCGTATT-TAAGGTCA-GAGTGAAAGCTTTTATTGAT-----------------------------------------------TGCAATTT----CCTTTC------TTT----CTTC-----TTGCGCTTTTCCAG---TTGAGAAGAGTGTGGTAAACAACAACAA------------------------------------CGA---G---GTGGCCTTGGATGAASizeHit CountTotal NormTotal
No Reads
droKik1
AGCCGC------AACATTCCG--AGGC-----------AGCTTGTTGAA-------GTTATTATC-------------ATTTAGCATTTCAATTGGCATCAATTATG---------ATATTGTAAATTAGTTTGC----------AAGC--GG-----CAATTGAATTTTTACTT-ATATATTCAA--------------------------------------GGGG-------C----------------------------TTTGC---T--CATT-TAAGGTCTGGAATAAAAGCTTTTATTGATTGT-T-------------------------------TGTTTAT---------TTC----TGGCTC------TTT----TTTT-------------TTGCAG---TGGACAAGAATTTGATAAATAACAACAA------------------------------------CGA---GGTGGTGGCCTTGGATGAGSizeHit CountTotal NormTotal
No Reads
droAna3
GAGAGA------TGACTTTCA--TTAT-----------GGGGCGACAAA-------GTTATTAGCATACGGGTATGGCATTTAGCT--TCAATTGGCGCCAATTACGA------TGACTTTGTAAATTGTTTAGC----------GGCC--AG-----CAATTGAATTTAGAGCC-ATGC-ACCA-----------------------------------C--TGGA------------------------------------------------------------------AGAATCTCTTTTTAAT-GGAAAAT------------------------------------------GTATA----TGTTTC------TTG----TCCC-------------TTTCAG---CTGATAAAAACTTGATAAACAACAACAA------------------------------------GGAGGCGGTGGTGGCCCTGGAGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAACAACAACAA------------------------------------GGAGGCGGTGGT.............2711.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAACAACAA------------------------------------GGAGGCGGTG...............2411.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACAACAACAA------------------------------------GGAGGCGGTGGT.............2611.001000010
droBip1
GA--TA----------TTCAT--T-ATGGTTATGATAGGGGCGATTGGA-------GTTATTAGCATACGAGCCTGGCACTTAGCT--TCAATTGGCGCCAATTACGA------TGGCTCTGTAAATTGTTTTGCGGTGAT--CTGTGA--TG-----GGATAGAGTTTT-----------------------------------------------------------------------------------------------------------------------------------TTTTTAAT-GGA-------------------------------------------A--AATTG----GTTTTT------TTC----TTCG-------------TTCCAG---CTGACAAAAACCTGATCAACAACAACAC------------------------------------AGA---GGCGGTGGTCCTGGAGGATSizeHit CountTotal NormTotal
No Reads
dp5
C-----------------------------------------------------------------------------GTTTAGCAT-TCAATTGGCATCAATTATGGGAATAGGGATATTGTAAATTAGTTTGTGGCATGTGGTATGT--GG-----CAATTGAATTTTTCGTCGAGAG-ATCAACAC----------------------------------AAGA-----------------------------A------------------------------------AATGTCTTTTACTTAT--------------------------------------------------GCTTT----ATTTTCGTTTTCCTT---TC-AT-------------TTTCAGTCGTGGAGAAGAATTTGATGAACAATAATAA------------------------------------TGA---A---GTTCCTTTGGAGAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C-----------------------------------------------------------------------------GTTTAGCAT-TCAATTGGCATCAATTATGGGAATAGGGATATTGTAAATTAGTTTGTGGCATGTGGTATGA--GG-----CAATTGAATTTTTCGTCGAGAG-ATCAACAC----------------------------------AAGA-----------------------------A------------------------------------AATGTCTTTTACTTAT--------------------------------------------------GTTTT----ATTTTCGTTTTCCTT---TC-AT-------------TTTCAGTCGTGGAGAAGAATTTGATGAACAATAATAA------------------------------------TGA---A---GTTCCTTTGGAGAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................ATGA--GG-----CAATTGAATTTTTCGT........................................................................................................................................................................................................................................................................................................................................2212.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGAATTTGATGAACA....................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA------------------------------------TGA---A---GTTCCTTTGGA....2011.001001000
droWil2
-------------------------------------------GTTGAA-------GTTATTAGC-------------ATTTAGCT--TCAATTGGCATCAATTATGA------TGATATTGTAAATTATTTTGT----------ATGCT-GG-----CAATTGAATTTT-------------------------------------------------GT--TG-----------------------------------------------------------------------AGTTTTCATTAAA-----------------------------------------------CA---TT---------TGGTTCCCCTT---TC-TTTTTATATATA-TATTACAG---TAGACAACAATTTGCTAAACAATAATAATAA---CAAC---GA---------------------TAA---GGAAGTGGCCTTGGATGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA---CAAC---GA---------------------TAA---GGAAGTGGCC.........2412.00200200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA---CAAC---GA---------------------TAA---GGAAGT.............2012.00200110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------------TAA---GGAAGTGGCCTTGGAT...2111.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAA---CAAC---GA---------------------TAA---GGAAGTGGCCTTG......2711.00100010
droVir3
------------------------------------------------------------------------------ATATGACA--TCAATTGGTATCAATTATGA------AGATATTGTAAATTATTTTGT----------GTATTATGCACAACAATTGGGCGTATTTT--GTGT-AGCTATAGAAA-------------------------CCAC--AAC---------A----GAT-------------A-------AAACT----CAAGTG-GATAAAAA-AGGGGGGAATTTTTGTTGGATGCAGAGGCTATGTTTTTTATTTTATTTTGAGAGTTTACTGAA----CACAG--G----AAATTC------TTC----TCTT-------------TTACAG---TTGATAAAACGCTGCTCACCACCAACAACAATAATAACAACAACAATAACATCAGCAGCTCGAACGA------GTCAGCTTTGGATGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGA------GTCAGCTTTGGAT...2012.002000100000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCGAACGA------GTCAGCTTTG......2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATAACAACAACAATAACATCAGC.................................2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACATCAGCAGCTCGAA.........................1911.001000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCACCACCAACAAC............................................................1911.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAACAACAATAACATCAGC.................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TG-GATAAAAA-AGGGGGGAATTTTTGT.....................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCTGCTCACCACCAACAAC............................................................2311.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGCTCGAACGA------GTCAGCT.........2511.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGCTGCTCACCACCAACAACA...........................................................2511.001000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAATAATAACAACAACAAT..........................................2450.201001000000000000000000000000000000000000000000000000000000000000
droMoj3
C-----------------------------------------------------------------------------ATTTGACA--TCAATTGGTATCAATTATGC------AGGCAATGGAAATTATTTTGT----------ATGC--TC-ACAGCAAATTGGTGTATTAT--GTGC-CCCAAGAGAGA-------------------------GTG-----AGA-------G---AGG-GAGAGAGGGTTTAGGGGGCCTTTTGC---T--CATT-TG-------------------------AACAG-T-------------------------------TGCTCATTAATTGAAATT-------------------C----TCTT-------------TTACAG---TTAATAAAACGCTGCTCACCAACAACAACAA---CAACAACAACAATAACAATAAGAGCAACAACGA------GCTGACTTTGGAGGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACGA------GCTGACTTTGG.....2111.001000001
droGri2
C-----------------------------------------------------------------------------ATTTAACA--TCAATTGGTATCAATTATGA------TGATATTGTAAATTATTTTGT----------ATATGCTGCAAACCAATTTAGC---ATCTT-AAGT----------ATCTAGTTGATTATGCCGTTTTTGTTTCTGCTCTCAGAAAGGTCAACTT------------------GCGGCA-T------------TT-GACCCACA-GATAAAACTTTTCTATTTAATGTAT-------------------------------TATTCAT----GTTCAACAACGGAAACTC------TCT----TTCC-------------TTACAG---TTGATAAGACGCTGCTCACCAACAACAACAA---CAAC---AACAATAACAATATCAACACAAATGA------GTCGGCTGTGGATGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:41 PM