ID:

dsi_3113

Coordinate:

3l:8224973-8225122 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATCACCAAGGCGGATGCGGCTGACTTTTGGAAGAGCAATTTCGGTAACAGGTGAGTGTCGCCTATTGGACAGTGAAACATCATGACCATAACAATGCCAAGTCTAATTGGTATTATTGGTAACTAAATGAATTAGTTGTTTAAAGTGCGGTTTCAAAACCAAGTGTTATATTTCAACTTAAAAGCAGTTCATTCATTGCGATTTGATATGGATAATATTACTAGAATTGGGACTGTGAATATCCAATTCC ************************************************..((((((.((...((((....((((((..(((..(((....((((((((......))))))))..)))(((((((.....)))))))......)))..))))))...))))..)).))))))..........(((((......))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
...........GGATGCGGCTGACTTTTGGAA..........................................................................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................AATTGGGACTGTGAAT..........	16	0	1	1.00	1	0	0	1	0	0	0
.............ATGCGGCTGACTTTTGGAAG.........................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
..............CGCGGCTGACTTTTG.............................................................................................................................................................................................................................	15	1	14	0.57	8	0	0	0	6	2	0
............................................................................................................................................................................TCAACTTAAAAGCAGGAC............................................................	18	2	6	0.17	1	0	1	0	0	0	0
............................................................................................................................................................................................................................GAAGAATTGGGACTGTG.............	17	2	18	0.06	1	0	0	0	0	0	1

Anti-sense strand reads

TAGTGGTTCCGCCTACGCCGACTGAAAACCTTCTCGTTAAAGCCATTGTCCACTCACAGCGGATAACCTGTCACTTTGTAGTACTGGTATTGTTACGGTTCAGATTAACCATAATAACCATTGATTTACTTAATCAACAAATTTCACGCCAAAGTTTTGGTTCACAATATAAAGTTGAATTTTCGTCAAGTAAGTAACGCTAAACTATACCTATTATAATGATCTTAACCCTGACACTTATAGGTTAAGG ************************************************..((((((.((...((((....((((((..(((..(((....((((((((......))))))))..)))(((((((.....)))))))......)))..))))))...))))..)).))))))..........(((((......))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR902009 testis
.............................................................................................................................................................................................GTAAGTAACGCTAAACTA...........................................	18	0	1	2.00	2	2	0	0
.............................................................................GTAGTGCTGGCACTGTTAC..........................................................................................................................................................	19	3	16	0.06	1	0	1	0
...............................................................................................................................................................................TAAATTATCGTCAGGTAAGT.......................................................	20	3	19	0.05	1	0	0	1

Generated: 04/24/2015 at 10:46 AM