ID:

dsi_31047

Coordinate:

3r:10780106-10780255 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-34.5	-34.4	-34.3

Flybase annnotation

exon [3r_10779919_10780105_-]; CDS [3r_10779919_10780105_-]; intron [3r_10780106_10791209_-]

No Repeatable elements found

mature

star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACACATTATTTATCACAGACACAGACATTCTCTATATAAATATATATGTATGTGTTTTCGTATATATGGGAATGGAGATTACTCAGGGGTCGCCGTGGGCCATTGCTTTCTTATCAGCAGCAACTCCTCCAAGGCGGAGTCAATCGAGTTTTCGAGTCATTTTCACTGACCGTCCCACGATCTTTTTGCTCATTTTGCAGACAACTGCGGCAACGTGAACAACACGAGTGGATCGAGTGCATCCGGATTC ************************************************.........(((...(((((...(((((((.((((.((....)).))))...(((((........)))))..(((((........)))))...((((....))))((((.......))))........)))))))...)))))..)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries
...........................................................................................................................................................................................................................CAACACGAGTGGATCGAGTGCATCCGG....	27	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................TGAACAACACTAGTGG...................	16	1	4	0.75	3	3	0	0	0	0
...................................................................................................................AGCAGCAACTCCTCCA.......................................................................................................................	16	0	3	0.33	1	0	0	1	0	0
.......................................................................................................................................................................................................................TGAACAACACTAGTG....................	15	1	7	0.29	2	2	0	0	0	0
...............................................................................................................................................TCGAGTGTTCGAATCATT.........................................................................................	18	2	7	0.14	1	0	0	0	1	0
.......................................................................................................................................................................................................................TGAACAACACTAGTGGG..................	17	2	8	0.13	1	1	0	0	0	0
....................................................................................................................................GGCGGGGTCAATCGA.......................................................................................................	15	1	9	0.11	1	1	0	0	0	0
.......................................................................................................................................................................TACAGTCCGACGATCTTT.................................................................	18	3	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

TGTGTAATAAATAGTGTCTGTGTCTGTAAGAGATATATTTATATATACATACACAAAAGCATATATACCCTTACCTCTAATGAGTCCCCAGCGGCACCCGGTAACGAAAGAATAGTCGTCGTTGAGGAGGTTCCGCCTCAGTTAGCTCAAAAGCTCAGTAAAAGTGACTGGCAGGGTGCTAGAAAAACGAGTAAAACGTCTGTTGACGCCGTTGCACTTGTTGTGCTCACCTAGCTCACGTAGGCCTAAG ************************************************.........(((...(((((...(((((((.((((.((....)).))))...(((((........)))))..(((((........)))))...((((....))))((((.......))))........)))))))...)))))..)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...........................................................................................................................................................CAGTAAGAGTGAATGGCAGGT..........................................................................	21	3	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................AAGGGTGCTAGAAAAACGAGTAAAACGT...................................................	28	1	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................AAGTGACTGGCAGAG..........................................................................	15	1	7	0.14	1	0	0	1	0	0
............................................................................CTAGTGCGTCCCCAGCG.............................................................................................................................................................	17	2	9	0.11	1	0	0	1	0	0
.................................................................................................................................................................AAGTGACTGGCAGAGC.........................................................................	16	2	20	0.05	1	0	0	0	0	1
........................................................................................................................TTTGAGGAGGTTCCG...................................................................................................................	15	1	20	0.05	1	1	0	0	0	0
..............................................................................................................................................................TAAAAGTGCCCGGCAG............................................................................	16	2	20	0.05	1	0	0	0	1	0

Generated: 04/24/2015 at 10:52 AM