ID:

dsi_31042

 Coordinate:

3r:10774250-10774399 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10774400_10774858_-]; five_prime_UTR [3r_10774400_10774858_-]; intron [3r_10768857_10774399_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATGCATTAAGCAGGTGGACGGAACACCGCACACCGTGAATAATTGAAGGTAGGTGAAGTTGCCCTGTCAGCAGGCCAGTGAATCTGATGCCAGATTTCAGCCCACATCACCGCCACGATTCCACGCATTAACCTTCGTCCTTGGCGGGAATTGTGTGCTCTTCTGGTCGGCATTTTTGTATATTTTAATTATTTATTTCTGCCACTCGAGAGCGGCAACGGTTGCCACCCCAAAGTGCCGAGCACTCG
**************************************************((((.(((((((((.......((.((((((.(((((((....))))))).(((.((((...(((((((((................))))....)))))....)))).)))...)))))).))......))).)))))).))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
.................GGACGGAACACCGCACACC...................................................................................................................................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCTGCAACTCGAGAGC................................... 16 1 5 1.60 8 0 7 0 0 1 0 0 0
......ATTAGGGAGGTGGACGGAA................................................................................................................................................................................................................................. 19 2 2 1.50 3 0 0 0 3 0 0 0 0
...................................................................................................................................................................TGTGATCGGCATTTTTTTATATTT............................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0
...TGCATTAAGCAGGTGGAGGGA.................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0
.............................................TGACAGTCGGTGAAGTTGCCC........................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 1 0 0
...........................................................................................................ATCACCGCCTCGATACCA............................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................TTTTCTGCAACTCGAGAGC................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................TGTGATCGGCATTTTTCTATA.................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0
............CATGTTGACGGAACGCCGCA.......................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 1 0
..............................................................................................GATTTCCGCCGACATCGCCGC....................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0
..........................................................................................................CATCACCGCCTCGACACCA............................................................................................................................. 19 3 20 0.15 3 0 0 0 0 3 0 0 0
.....................................................................................................................................................................................................TCTCTGCAACTCGAGAGC................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CAGGAGAGCAGCAACGGTT......................... 19 3 20 0.10 2 0 0 0 2 0 0 0 0
.............................................................TACCCTGTCAGCAGG.............................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................GAATTGAGTGCTCTT...................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 1
................................................................................................................................................................TCTTCTCGCCGGCATTTTTTT..................................................................... 21 3 17 0.06 1 0 0 0 1 0 0 0 0
.............................................................................................................................................CTTGAGGGGAATTGTGAGC.......................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................GTTTCTGCAACTCGAGA..................................... 17 2 19 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TTTTCTGCAACTCGAGAGCA.................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TTTACGTAATTCGTCCACCTGCCTTGTGGCGTGTGGCACTTATTAACTTCCATCCACTTCAACGGGACAGTCGTCCGGTCACTTAGACTACGGTCTAAAGTCGGGTGTAGTGGCGGTGCTAAGGTGCGTAATTGGAAGCAGGAACCGCCCTTAACACACGAGAAGACCAGCCGTAAAAACATATAAAATTAATAAATAAAGACGGTGAGCTCTCGCCGTTGCCAACGGTGGGGTTTCACGGCTCGTGAGC
**************************************************((((.(((((((((.......((.((((((.(((((((....))))))).(((.((((...(((((((((................))))....)))))....)))).)))...)))))).))......))).)))))).))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 O001
Testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................GTAGTGGCGGTGCTTAGGTGCGTAAT...................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................CGTTGCAAACGGTGGGGTCTCACGGCT....... 27 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................CGTAATTGGAAGCAGGAAC......................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................GTCCGGTCACTTAGACTA................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................GTAATTGGAAGCAGGAAC......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................AGTCGGCTGTAGTGG......................................................................................................................................... 15 1 2 0.50 1 0 0 0 1 0 0 0
................................................................................................AAAATAGGGTGTAGTGGC........................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0 0
..................................................................................................................................ATTGGAAGCAAGAAC......................................................................................................... 15 1 11 0.18 2 0 0 0 0 1 0 1
.......................................................................AGTCCGGTCACTTACACTAT............................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0
..................................................................................................................................................CCCCTTAACACTCGAGA....................................................................................... 17 2 13 0.08 1 0 0 0 1 0 0 0
............................................................................GGTCAATTAGACTAAGG............................................................................................................................................................. 17 2 14 0.07 1 0 0 0 0 1 0 0
......................................................................................................................................................................CCACCAGAAAAAACATATAAA............................................................... 21 3 19 0.05 1 0 1 0 0 0 0 0
.TTAAGTAATGCGTCCAC........................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0
..................................................................................................................................ATTGGAAGCAGGAACTA....................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:49 AM