ID:

dsi_31015

Coordinate:

3r:4644395-4644544 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-14.5	-14.3	-14.2

Flybase annnotation

CDS [3r_4644545_4644648_-]; exon [3r_4644545_4644651_-]; intron [3r_4644002_4644544_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAGCCCGGCAACTATAAACGCACCACCAAGCGGATCGAGGATGGTTACAAGTGAGTGGATAATCCCCAGGGAGTCTTGGTGCACAGAGAGATACTTTACTTTGCCATTATGTCAGTCAAATTCCTCGACTTAATACAATTGGCTTAATATTCAAAAACAGATTCGTAGCTGCAACCCAATCGTTTTTCAACGTCTCTGCCATACCAATTGGTATTGGTAACTTTATCTTTTCTGTATGTTATGTAGGTCA ****************************************************.((((((....(((((....))))).(((.((((((...)))).)).))).((((.(((((........)).))).)))).............))))))................*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries
.................................................................................................................................................AATATTCAAAAACAGATTCGTAGC.................................................................................	24	0	1	2.00	2	0	2	0	0	0	0	0	0	0
.................ACGCACCACCAAGCGGATCGAGGATG...............................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................ACCACCAAGCGGATCGAGGATG...............................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.....................ACCACCAAGCGGATCGAGGATGGTT............................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0
...........................AAGCGGATCGAGGATGGTTACA.........................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................GTGGATAATCCCCAGGGA..................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............TACAAACGCACCACCAAGCGGATCGAGG..................................................................................................................................................................................................................	28	1	1	1.00	1	0	0	0	1	0	0	0	0	0
.......................CACCAAGCGGATCGAGGATGGTTAC..........................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............TACAAACGCACCACCAAGCGGATCGAGGA.................................................................................................................................................................................................................	29	1	1	1.00	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................TTGGCTTAATATTGAACAACC...........................................................................................	21	3	3	0.33	1	0	0	0	0	0	0	1	0	0
...CCCGGCAACTCTAAGCG......................................................................................................................................................................................................................................	17	2	7	0.14	1	0	0	0	0	0	0	0	0	1
.............................................................ATCGTCAGGGAGTCTTGGTC.........................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................GCTGTATCCCAATCGTT..................................................................	17	2	11	0.09	1	0	0	0	0	0	0	1	0	0

Anti-sense strand reads

CTCGGGCCGTTGATATTTGCGTGGTGGTTCGCCTAGCTCCTACCAATGTTCACTCACCTATTAGGGGTCCCTCAGAACCACGTGTCTCTCTATGAAATGAAACGGTAATACAGTCAGTTTAAGGAGCTGAATTATGTTAACCGAATTATAAGTTTTTGTCTAAGCATCGACGTTGGGTTAGCAAAAAGTTGCAGAGACGGTATGGTTAACCATAACCATTGAAATAGAAAAGACATACAATACATCCAGT *******************************************************************************.((((((....(((((....))))).(((.((((((...)))).)).))).((((.(((((........)).))).)))).............))))))................****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
.................................................................................................................................................................................................GAGACGGGATGGTGAACC.......................................	18	2	7	0.14	1	0	1	0	0	0
.................................................................................................................................................................................................GCGACGGTATGGTTAAAC.......................................	18	2	8	0.13	1	0	1	0	0	0
..................................................................................TGTCTCTCTGTGTAATGA......................................................................................................................................................	18	2	9	0.11	1	1	0	0	0	0
....................................................................................................................................................................CATCGATGTGGGGTTA......................................................................	16	2	20	0.10	2	2	0	0	0	0
...................................................................................................................................................................GCATGGACGTAGGGTTAG.....................................................................	18	2	10	0.10	1	1	0	0	0	0
....................................................................................................................................................................................GCGAAAAGTCGCAGAGA.....................................................	17	2	20	0.10	2	2	0	0	0	0
.............................................................................CCACGAGTCTCTCTAAG............................................................................................................................................................	17	2	12	0.08	1	0	0	1	0	0
............................................................................ACCACTTGTCTCACTCTGA...........................................................................................................................................................	19	3	15	0.07	1	0	0	0	1	0
....................................................................................................................GTTTAAGGAGCTGAT.......................................................................................................................	15	1	20	0.05	1	0	0	1	0	0
.........................................ACAACTGTTCACTCACCTCT.............................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................................TTGCGAAAAGTCGCAGAGA.....................................................	19	3	20	0.05	1	1	0	0	0	0

Generated: 04/24/2015 at 10:19 AM