ID:

dsi_30957

 Coordinate:

3r:11333474-11333747 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATCTGTGTTGCTAACCGATTTTCCGCTTTAACACCCACAATTCGCAACGGTAAATGGTCAGGCGTAAGCAAGAGAGTGTCGAGAATTTTTAAGTTGACGAAAAACGGCAGTTTTCTCGAATATCGTGCAGCTTAAACGAGTGACCTTAATCCAAAAGCCGTAAACCTTAAAATGTATTAACATTTTTCGGAGTTCAAAAACACGCGCAATTAAACACACAAAGTGAATGACAAACGAGCTTTGGCAAACTCAACAAGACAACAAACTATGATGCGCCACACTTTGAGCTGGCGTGTAGATTGGCGTAACCGCCTATCTGGGCGTAGGAAGGCCTTAACAACTTCCTCAATCTAACGCCCTTCGAAATGTTTTA
******************************************************************************************************************************************************************************.............(((((((((.....((..(((...............)))..))......))))))))).******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................ATGACAAACGAGCTTTGGC................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.ATCTGTGTTGCTAACCGA................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................GCCCTTCGAAATGTT... 15 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................GTATTAACATTTTTCGGA...................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
......................................................................................TTGTTAAGTTGACTAAAAAAGGCA........................................................................................................................................................................................................................................................................ 24 3 2 0.50 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................GTCAAACGAGCTTTG.................................................................................................................................. 15 1 10 0.40 4 0 0 0 4 0 0
......................................................................................................................................................................................................................................................................................................................CGCCTATCTGAGCGT................................................. 15 1 4 0.25 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................................................TCTAACGTCCTTGGAAA....... 17 2 17 0.24 4 0 0 0 1 2 1
...........................................................................................................................................................................................................................................................................................TTGATCTGGCGTGTTGAT......................................................................... 18 2 9 0.11 1 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TGTGGGCGTAGGAAG........................................... 15 1 19 0.05 1 0 0 0 1 0 0
........................................................................................................................................................................................TCATCGGAGTTCAAAAA............................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................................................................ACGACCTTCGAAAGGTTCT. 19 3 20 0.05 1 0 1 0 0 0 0
.............................................................................................................GGTTTTCTCGAATAGCGTT...................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................CACAAAGTGAAGGAC.............................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................ACAACCGAGCTTTGTC................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

GTAGACACAACGATTGGCTAAAAGGCGAAATTGTGGGTGTTAAGCGTTGCCATTTACCAGTCCGCATTCGTTCTCTCACAGCTCTTAAAAATTCAACTGCTTTTTGCCGTCAAAAGAGCTTATAGCACGTCGAATTTGCTCACTGGAATTAGGTTTTCGGCATTTGGAATTTTACATAATTGTAAAAAGCCTCAAGTTTTTGTGCGCGTTAATTTGTGTGTTTCACTTACTGTTTGCTCGAAACCGTTTGAGTTGTTCTGTTGTTTGATACTACGCGGTGTGAAACTCGACCGCACATCTAACCGCATTGGCGGATAGACCCGCATCCTTCCGGAATTGTTGAAGGAGTTAGATTGCGGGAAGCTTTACAAAAT
********************************************************************************************************************************.............(((((((((.....((..(((...............)))..))......))))))))).****************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
.............................................................................................................................................................................................................................................................TGTTCTGGTGTGTGACACTAC.................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................................................................................................GCGTTAATTCGTCTGTTT....................................................................................................................................................... 18 2 20 0.35 7 0 0 4 2 0 1
......................AGGCTAAATTGTGGCCGTTA............................................................................................................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................GTTCTGGTGTATGACACTAC.................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................GTTCTGTAGTGTGACACTAC.................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................TATGTTGTTTGATACT...................................................................................................... 16 1 9 0.11 1 0 1 0 0 0 0
......................AGGCCAAATTGTGGCCGT.............................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.10 2 0 2 0 0 0 0
......................AGGCCAAATTGTGGCTGTC............................................................................................................................................................................................................................................................................................................................................. 19 3 10 0.10 1 0 1 0 0 0 0
.....................................TGTTGAGTGTTGCCATT................................................................................................................................................................................................................................................................................................................................ 17 2 19 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................CGTTTGTGTTGTTGTGTTG............................................................................................................... 19 2 20 0.05 1 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................GAGTTGTTCTGTTGG.............................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0
.........................................AAGCGTTGCAATTTA.............................................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:11333424-11333797 + dsi_30957 CATC----------------TGTGTTGCTAACCGATTTTC---CGC-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AAGC-AAGAGAGTGTC-GAGAATTTT-T-AAG-TTGACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------GAATAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCCAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAC-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ACAACAAA----CTATGATGCGCCACACTTTGAGCTGGCGTGTAGATTGGCGTAACCGCCTATCT-GGGCGTAGGA-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droSec2 scaffold_0:12163316-12163629 + CATC----------------TGTGTTGCTAACCGATTTTC---CGC-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AAGC-AAGAGAGTGTC-GAGAATTTT-T-AAG-TTGACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------GAGTAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCCAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAC-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ATAAC--------AAC---------------------------------------------------GA------C-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
dm3 chr3R:9851304-9851617 - CATC----------------TGTGTTGCTAACCGATTTTC---CGC-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AACC-AAGAGAGTGTC-GAGAATTTT-T-AAG-TTGACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------GAATAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCCAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------C-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droEre2 scaffold_4770:9393090-9393410 - CATC----------------TGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGG----------AAAC-AAGAGAGTGTC-GAGTATTTT-G-AAG-TTGACGAAACACGGC---AGTTTT-CT-------------------------------------------------------------------------CAATAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCTGAAA----------GCCGTAA---A--------------------------CTTTA--AAA-TGCATTAA-CAT---TT---G-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCAAGAGCTCAACAAG-ACAAC--------AAC---------------------------------------------------GACAGGCAC-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droYak3 3R:16581153-16581465 + CATC----------------TGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AACC-AAGAGGGTGTC-GAGAATTTT-A-AAG-TTGACGAAAAACGGC---AGTTGC-CT-------------------------------------------------------------------------TAATAT-----------CGTG----------------------------CAGTTT--AAACGAGTGACCTTAATCTAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------C-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droEug1 scf7180000409802:98746-99067 + CATC----------------TGTGTTGCTAACCGATTTTC---CCATTTTAACACCC-----AAA------------ATTCGCAACGGTAAATGCCCCAGTCGT----------TTAC-AA-AAAGTGTT-TAGAATTCT-T-AAGGTTAACGAAAAACAAC---AGTTTT-CTAC-----------------------------------------------------------------------GAATAT-----------CGCG----------------------------CAGTTTT-CGATAAGTGACCTTAATCCAAAA-A--------GTCGTTA---A--------------------------CTGAA--AAA-TGTATTAA-AATCTTTT---T-TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACATAAA-----AAGTGAATGACAAAT-------------------GAGCTT-TGGGGCAACA--GCAACAA---CGAC--------AAC---------------------------------------------------AA------C-AGACCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droBia1 scf7180000302402:2623863-2624189 - CATC----------------TGTGTTGCCAAACGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGCCC-AGGCGT----------GTCC-AA-AGTGTGTC-CAGAATTTTTT---G-TGGCTAAAAAAAAGCTAAAGTTGC-GC-------------------------------------------------------------------------CAATAT-----------CGCG----------------------------CTGTTTT-AGGCGAGTGACCTTAATCCCAAA----------GTCGTAA---A--------------------------C-TTA--AAA-TGTTTTAAACAC---TG-----TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-CG--GCAGCA--ACAACAACCGAAAC--------AAC---------------------------------------------------GACGGCGAC-AGGCCTTAACCACTTCCTCAATCTCAATCTAACGCCCTTCGA-AATGTTTTA
droTak1 scf7180000415380:734329-734634 - CATC----------------TGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGCTTTATCCGT----------ATCC-AA-AGTGTGTC-TAGAATTTT-TCTAG-TTGACGAAAAACGTA---ACTTTT-CT-------------------------------------------------------------------------GAATGT-----------CGCG----------------------------CAGTTTC-AAACGAGTGACCTTAATCTTAAA-------------------------------------------------------AG-TGTATTAAACAC---TT-----TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACTCA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--ACAACA--ACAACAA---CGAC--------AAC---------------------------------------------------GACAGCGACAGGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droEle1 scf7180000491047:1314769-1315093 + CAAC---GGCC-CTC-CGTGTGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ATA------------ATTCGCAACGGTAAATGATGAAGGTGT----------ACTC-AA-AGTGCGTG-TAGAATTTT-GTTAG-TTGCCAAAAAACCGC---AGTTTT-TT-T-----------------------------------------------------------------------TAACAT-----------CGAG----------------------------CAGTTTC-AAACGGGTGACCTTAATGAAAAA----------GTCGTAG---A--------------------------C--TAAAACTTTTTCTTAA-AGT----C---T-TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACATA-----AAGTGAATGACTAAA-------------------GAGCTT-TG--GCAAAA--TCAACAA---TGAC--------GAC---------------------------------------------------GA------C-TTGTCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droRho1 scf7180000779165:29811-30126 - CATC-------------GTGTGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGCTAAAAGCGT----------ATCC-AA-AGTGTGTC-TAGAATTTT-TTTAG-TTAACGAAAAAACGC---AGTTAT-CT-------------------------------------------------------------------------AAATAT-----------CGAG----------------------------CAGTTTT-AAACGAGTGACCTTAATATAAAA----------GCCGAAA---A--------------------------C--TAAAATATTTTCTTAT-AG----TC---T-TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------TAGCTT-TG--GCAGAA--ACAAAAA---CGAC--------GAC---------------------------------------------------AA------C-ATGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droFic1 scf7180000453912:357342-357659 - TATC---TGCC-CTC-CGTGTGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATACTC-AGCTGG----------ATCC-AA-AGTGTGCC-TAGAATTTT-T-GAG-TTTTCGAAAAACTGC---TGTTTT-TT-------------------------------------------------------------------------GAGTAT-----------CGCG----------------------------CAATTTT-AAACAAGTGACCTTAATCTTAAA----------GTCGTAA---A--------------------------T-TAA--AAA-TTTCTTAA-AGT---CT---T-TC-------------------------------G-----AGTTCAAAAACACGCGCAATTAAACA--CA-----ATGTGAATGACAAAA------------------TAAGCTT-TG--GCAACA--ACAACAA---CGAC--------GAC---------------------------------------------------GA------C-A-GCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTA
droKik1 scf7180000302475:1292044-1292393 + CATT----------------TACATTGCTTACCGATTTTCCCCCGA-TT-TACACCC-----ACA--GTG-------ATTCGCAACGGTAAATGT-C-AAGTGCTTGGTGTCCAGCCC-AA-A---------AGAATTTT-TCTGT-TTGGCTAAAAAC-GC---AGTTTTCCT-T-----------------------------------------------------------------------GCTTTT-----------CACGCGCGTGTTTCGCTCTCG------G----TTGTTTCAGAGCGCGTGACCTTAATCTGTGAACATCGTGGAATCGTAA---A--------------------------ACTC-----------------------CTCCACTCGGT----------------GAAAAAAGGTCTCGAAATTGTTTTAAAACACGCGCAATTTAACACACA-----AAGTGAATAATACAA----------------GAAGAGCTTTTT--ACAACA--ACTCGAA---C---AGA-----------------------------------------------------------GG--------------CAGCAACTTCCTCA------ATCTAACGCCCTTCAACAATGTTTTA
droAna3 scaffold_13340:20624221-20624579 + CATC-------------------GTTGCTAACCGATTTTCAACCGA-TTTTACGCCC-----ACA------------ATTCGCAACGGTAAATGC-C-AAATGC----------ACAT-AAAAAAGTACCCGATAATA-G-T-ATT-CTGATAAAAAAAGGC---GTTTTT-CG--------------------------------------------------------------------------CAGTG-----------CGCGCGTGTGAAAAACTA--------------CA-TTTC-GAGCTTATGACCTTAATCTTAAA----------GTTTTAA---A--------------------------------------------A-CAT---CC---A-TCGAAGGAAAAAAAATAAATA-AAATAAGGTC-C-----GATTTGAGAACACGCGCAATTAAGCCCACT-----AAGTGTATGATAAAGAAAAAAAAATAAAGAAAAAGAGCTT-TA--ACAACA--ACAACAA---------A----TTATAATT---------------------------------------------AAGA------C-CAGTCTTAACGACTTCCTCA------ATCTAACGCCCTTCGA-AATGAATTA
droBip1 scf7180000396413:1775569-1775895 - CATC-------------------GTTGCCAACCGATTTTCAA-CGA-TTTTACGCCC-----ACA------------ATTCGCAACGGTAAATGC-C-AAATGC----------ACCTTAAAAAAGTCACCGATAATATT-T---G-CTGATAAAAAAAGGC---AGTTTT-TC-------------------------------------------------------------------------GCGTTG-----------TGCGCGTGTGAAATAGT---------------CAACTTA-GAGCTTGTGACCTTAATCTAA-A----------GTCTTAA---A--------------------------CATC-----------------------CA----------------AAATAAATAGAAAT-----A-A-----GGTTCGAGAACACGCGCAATTAACCCCACT-----AAGTGTACGATAAAAA-------------AAGAAGAGCTT-TA--ACAACA--AC---AAA-CTATT--------TATGA-----------------------------------------------AAGA------C-CAGTCTTAACCACTTCCTCA------ATCTAACGCCCTTCGA-AATGAATTA
dp5 2:13545242-13545308 + TCTCATCTGTCTCTCTAGTGTGTATTGCTAACTAATTTTC---CAT-AAAAAAACCT--------------------ATTCGTAACGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:6904412-6904478 - TCTCATCTGCCACTCTAGTGTGTATTGCTAACTAATTTTC---CAT-AAAAAAACCT--------------------ATTCGAAACGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004921:1992582-1992612 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTCCTCA------ATTCAACGCCCTCCAC-ATTGT----
droVir3 scaffold_12822:560134-560472 + CTG-------------------TTTCGCAGAACGCGTCT-----------AACACAGTCGAAACAATTTGGCTCAAAACTAAAAACTACAAACTACT-ACGCGT----------AATC-C-------------------------G-TTGTGGAAGAAACTG---A---TT-TC--GGTTTGCCAAGGTGTGTAAAGGT---------CGGGCGTCGCTTAACGTTTTCAATCAATTTGTAACTGCCGGCCATAGCGTGACCCGAACGCGCGTGCTTTACCATTG-----------CTG---T-ATAACTGTGACCTTAATTTAAAC----------AAATAA------------------------TATCAGAA-----------------------------------------GCCAAATAC----AAGCAAGCTT-C-----AAACAACAAACACGCGCAATTAAACACTAA-----AAGCGAACGAGCAGA-------------------GAGCTT-TA---CAACA--ACAACAA---C---AAGAGCACTAT---------------------------------------------------G------------------------------------------------------------A
droMoj3 scaffold_6540:33232421-33232537 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACCTTAATTTAAAC----------ACAAAAA---A--------------------------A-GTG--AAA-TATAT-AC-TGC---TA---G-TT-----------------------------G-G-----AAACAAGAAACACGCGCAATTAAACGTGAA-----ACGCGAACAAGTCGA-------------------AAGCTT-TA---CAACA--ACAACAA---C---AAA-------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15074:3215234-3215549 - AAAA---TTTC---------GATTTTGTCGTTTGTTTGCC---CAA-TTTA---TCC-----ATT------------T------------------------------------ATCC-AA-AAGGTGTG-TGTGT-----------GTGTGTAA---------------------------------------AAGGTCGAGAGAATCGGGCGTTGGTT----TTTTCGTTTG--TTGTAACTCT--------GCGTAACCTGTAT--GTGTGTTATACTGTTAGCCATAGATGTGTG---T-ATCTCTGTGACCTTAATTTAAAC----------ACCAAAAGTAATATTTATATATATATATATTATCAGAA-----------------------------------------GTAGAATACGTG-CTACTAGCTT-T-----GAACAAGAAACACGCGCAATTAAACACACAAAAAAAAGCGAGCGACCAAA-------------------GAGCTT-TA---CAACA--ACAACAA---C---AA--------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATC----------------TGTGTTGCTAACCGATTTTC---CGC-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AAGC-AAGAGAGTGTC-GAGAATTTT-T-AAG-TTGACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------GAATAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCCAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAC-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ACAACAAA----CTATGATGCGCCACACTTTGAGCTGGCGTGTAGATTGGCGTAACCGCCTATCT-GGGCGTAGGA-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAAAC-------------------GAGCTT-TG--GC................................................................................................................................................1911.00100100000000000000
.ATC----------------TGTGTTGCTAACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTCGA-AATGTT...1511.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTATTAA-CAT---TT---T-TC-----------------------------G-G-----A.................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
CATC----------------TGTGTTGCTAACCGATTTTC---CGC-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AAGC-AAGAGAGTGTC-GAGAATTTT-T-AAG-TTGACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------GAGTAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCCAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAC-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ATAAC--------AAC---------------------------------------------------GA------C-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................GTC-AGGCGT----------AAGC-AAGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........................................................................................................................................................................................................................................................................................................................GACCTTAATCCAAAA----------GCCGT..........................................................................................................................................................................................................................................................................................................................................2011.0010100
............................................GC-TTTAACACCC-----ACA------------ATTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
dm3
CATC----------------TGTGTTGCTAACCGATTTTC---CGC-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AACC-AAGAGAGTGTC-GAGAATTTT-T-AAG-TTGACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------GAATAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCCAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------C-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................TGTTGCTAACCGATTTTC---CGC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATTCGCAACGGTAAATGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.ATC----------------TGTGTTGCTAACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TGACCTTAATCCAAAA----------GCCGT..........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................A------------ATTCGCAACGGTAAATGGTC-AGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................TAAATGGTC-AGGCGT----------AACC-AAGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AAATGGTC-AGGCGT----------AACC-AAGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000
.........................................................................................................................................TTT-T-AAG-TTGACGAAAAACGGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................T----------AACC-AAGAGAGTGTC-GAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................CT-C-----------------------------------------------------------------------GAATAT-----------CGTG----------------------------CAGCTT--A...............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTT-T-AAG-TTGACGAAAAACGGC---AGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGACAAAA-------------------GAGCTT-TG--G.................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...........................................................................................ATGGTC-AGGCGT----------AACC-AAGAGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATTCGCAACGGTAAATGGTC-AGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAA........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAAA-------------------GAGCTT-TG--GCA...............................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCA................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................CGT----------AACC-AAGAGAGTGTC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................C---CGC-TTTAACACCC-----ACA------------ATTCGCAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................A------------ATTCGCAACGGTAAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................ATTTT-T-AAG-TTGACGAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTC-AGGCGT----------AACC-AAGAGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AGTGACCTTAATCCAAAA----------GCC............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................C-AGGCGT----------AACC-AAGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-ACAAC--------AAC---------------------------------------------------GA------C-AGGCCTT.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................AATGGTC-AGGCGT----------AACC-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCA...............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAA...........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................TGCTAACCGATTTTC---CGC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ACGAAAAACGGC---AGTTTT-CT-C-----------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTAAATGGTC-AGGCGT----------AACC-AAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GAGTGTC-GAGAATTTT-T-AA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CAACGGTAAATGGTC-AGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................T--AAACGAGTGACCTTAATCCA............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................AAGAGAGTGTC-GAGAATTTT-T-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................TGGTC-AGGCGT----------AACC-AAGAGAGTGTC-GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTT-TG--GCAAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------......................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GTGTC-GAGAATTTT-T-AAG-TTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TC-AGGCGT----------AACC-AAGAGAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGACAAAA-------------------GAGCTT-TG--GC................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATC----------------TGTGTTGCTAACCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACA-----AAGTGAATGACAAAA-------------------GAGCTT-......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GTC-AGGCGT----------AACC-AAGAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACACACA-----AAGTGAATGACAAAA-------------------GAGC.........................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AGTGTC-GAGAATTTT-T-GG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
CATC----------------TGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGG----------AAAC-AAGAGAGTGTC-GAGTATTTT-G-AAG-TTGACGAAACACGGC---AGTTTT-CT-------------------------------------------------------------------------CAATAT-----------CGTG----------------------------CAGCTT--AAACGAGTGACCTTAATCTGAAA----------GCCGTAA---A--------------------------CTTTA--AAA-TGCATTAA-CAT---TT---G-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCAAGAGCTCAACAAG-ACAAC--------AAC---------------------------------------------------GACAGGCAC-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG-ACAAC--------AAC---------------------------------------------------GACAGGCAC-AGGCCT..............................................2611.0010100000
......................................................................................................................................................................................................................................................................................................................GTGACCTTAATCTGAAA----------GCCGTAA---A--------------------------C.........................................................................................................................................................................................................................................................................................................2611.0010000100
droYak3
CATC----------------TGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGGTC-AGGCGT----------AACC-AAGAGGGTGTC-GAGAATTTT-A-AAG-TTGACGAAAAACGGC---AGTTGC-CT-------------------------------------------------------------------------TAATAT-----------CGTG----------------------------CAGTTT--AAACGAGTGACCTTAATCTAAAA----------GCCGTAA---A--------------------------CCTTA--AAA-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--GCAAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------C-AGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA-----AAGTGAATGACAAAA-------------------GAGC.........................................................................................................................................................2311.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TG--GCAAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------C-....................................................2811.00100100000000
..................................................................................................................AACC-AAGAGGGTGTC-GAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC--TCAACAAG-ACAAC--------AAC---------------------------------------------------GA------C-....................................................2311.00110000000000
.........................................................................................AAATGGTC-AGGCGT----------AACC-AAGAGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................A-TGTATTAA-CAT---TT---T-TC-----------------------------G-G-----AGT...............................................................................................................................................................................................................................2211.00100100000000
..................................................................................................................................................................................................................................................................................................................ACGAGTGACCTTAATCTAAAA----------GCCGT..........................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droEug1
CATC----------------TGTGTTGCTAACCGATTTTC---CCATTTTAACACCC-----AAA------------ATTCGCAACGGTAAATGCCCCAGTCGT----------TTAC-AA-AAAGTGTT-TAGAATTCT-T-AAGGTTAACGAAAAACAAC---AGTTTT-CTAC-----------------------------------------------------------------------GAATAT-----------CGCG----------------------------CAGTTTT-CGATAAGTGACCTTAATCCAAAA-A--------GTCGTTA---A--------------------------CTGAA--AAA-TGTATTAA-AATCTTTT---T-TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACATAAA-----AAGTGAATGACAAAT-------------------GAGCTT-TGGGGCAACA--GCAACAA---CGAC--------AAC---------------------------------------------------AA------C-AGACCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotal
No Reads
droBia1
CATC----------------TGTGTTGCCAAACGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGCCC-AGGCGT----------GTCC-AA-AGTGTGTC-CAGAATTTTTT---G-TGGCTAAAAAAAAGCTAAAGTTGC-GC-------------------------------------------------------------------------CAATAT-----------CGCG----------------------------CTGTTTT-AGGCGAGTGACCTTAATCCCAAA----------GTCGTAA---A--------------------------C-TTA--AAA-TGTTTTAAACAC---TG-----TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------GAGCTT-CG--GCAGCA--ACAACAACCGAAAC--------AAC---------------------------------------------------GACGGCGAC-AGGCCTTAACCACTTCCTCAATCTCAATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotal
No Reads
droTak1
CATC----------------TGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGCTTTATCCGT----------ATCC-AA-AGTGTGTC-TAGAATTTT-TCTAG-TTGACGAAAAACGTA---ACTTTT-CT-------------------------------------------------------------------------GAATGT-----------CGCG----------------------------CAGTTTC-AAACGAGTGACCTTAATCTTAAA-------------------------------------------------------AG-TGTATTAAACAC---TT-----TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACTCA-----AAGTGAATGACAAAA-------------------GAGCTT-TG--ACAACA--ACAACAA---CGAC--------AAC---------------------------------------------------GACAGCGACAGGGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotal
No Reads
droEle1
CAAC---GGCC-CTC-CGTGTGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ATA------------ATTCGCAACGGTAAATGATGAAGGTGT----------ACTC-AA-AGTGCGTG-TAGAATTTT-GTTAG-TTGCCAAAAAACCGC---AGTTTT-TT-T-----------------------------------------------------------------------TAACAT-----------CGAG----------------------------CAGTTTC-AAACGGGTGACCTTAATGAAAAA----------GTCGTAG---A--------------------------C--TAAAACTTTTTCTTAA-AGT----C---T-TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACATA-----AAGTGAATGACTAAA-------------------GAGCTT-TG--GCAAAA--TCAACAA---TGAC--------GAC---------------------------------------------------GA------C-TTGTCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotal
No Reads
droRho1
CATC-------------GTGTGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATGCTAAAAGCGT----------ATCC-AA-AGTGTGTC-TAGAATTTT-TTTAG-TTAACGAAAAAACGC---AGTTAT-CT-------------------------------------------------------------------------AAATAT-----------CGAG----------------------------CAGTTTT-AAACGAGTGACCTTAATATAAAA----------GCCGAAA---A--------------------------C--TAAAATATTTTCTTAT-AG----TC---T-TT-----------------------------G-G-----AGTTCAAAAACACGCGCAATTAAACACACA-----AAGTGAATGACAAAA-------------------TAGCTT-TG--GCAGAA--ACAAAAA---CGAC--------GAC---------------------------------------------------AA------C-ATGCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotal
No Reads
droFic1
TATC---TGCC-CTC-CGTGTGTGTTGCTAACCGATTTTC---CCA-TTTAACACCC-----ACA------------ATTCGCAACGGTAAATACTC-AGCTGG----------ATCC-AA-AGTGTGCC-TAGAATTTT-T-GAG-TTTTCGAAAAACTGC---TGTTTT-TT-------------------------------------------------------------------------GAGTAT-----------CGCG----------------------------CAATTTT-AAACAAGTGACCTTAATCTTAAA----------GTCGTAA---A--------------------------T-TAA--AAA-TTTCTTAA-AGT---CT---T-TC-------------------------------G-----AGTTCAAAAACACGCGCAATTAAACA--CA-----ATGTGAATGACAAAA------------------TAAGCTT-TG--GCAACA--ACAACAA---CGAC--------GAC---------------------------------------------------GA------C-A-GCCTTAACAACTTCCTCA------ATCTAACGCCCTTCGA-AATGTTTTASizeHit CountTotal NormTotal
No Reads
droKik1
CATT----------------TACATTGCTTACCGATTTTCCCCCGA-TT-TACACCC-----ACA--GTG-------ATTCGCAACGGTAAATGT-C-AAGTGCTTGGTGTCCAGCCC-AA-A---------AGAATTTT-TCTGT-TTGGCTAAAAAC-GC---AGTTTTCCT-T-----------------------------------------------------------------------GCTTTT-----------CACGCGCGTGTTTCGCTCTCG------G----TTGTTTCAGAGCGCGTGACCTTAATCTGTGAACATCGTGGAATCGTAA---A--------------------------ACTC-----------------------CTCCACTCGGT----------------GAAAAAAGGTCTCGAAATTGTTTTAAAACACGCGCAATTTAACACACA-----AAGTGAATAATACAA----------------GAAGAGCTTTTT--ACAACA--ACTCGAA---C---AGA-----------------------------------------------------------GG--------------CAGCAACTTCCTCA------ATCTAACGCCCTTCAACAATGTTTTASizeHit CountTotal NormTotal
No Reads
droAna3
CATC-------------------GTTGCTAACCGATTTTCAACCGA-TTTTACGCCC-----ACA------------ATTCGCAACGGTAAATGC-C-AAATGC----------ACAT-AAAAAAGTACCCGATAATA-G-T-ATT-CTGATAAAAAAAGGC---GTTTTT-CG--------------------------------------------------------------------------CAGTG-----------CGCGCGTGTGAAAAACTA--------------CA-TTTC-GAGCTTATGACCTTAATCTTAAA----------GTTTTAA---A--------------------------------------------A-CAT---CC---A-TCGAAGGAAAAAAAATAAATA-AAATAAGGTC-C-----GATTTGAGAACACGCGCAATTAAGCCCACT-----AAGTGTATGATAAAGAAAAAAAAATAAAGAAAAAGAGCTT-TA--ACAACA--ACAACAA---------A----TTATAATT---------------------------------------------AAGA------C-CAGTCTTAACGACTTCCTCA------ATCTAACGCCCTTCGA-AATGAATTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................TTTACGCCC-----ACA------------ATTCGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTAAGCCCACT-----AAGTGAT........................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAATAAAGAAAAAGAG..........................................................................................................................................................2040.251000010
droBip1
CATC-------------------GTTGCCAACCGATTTTCAA-CGA-TTTTACGCCC-----ACA------------ATTCGCAACGGTAAATGC-C-AAATGC----------ACCTTAAAAAAGTCACCGATAATATT-T---G-CTGATAAAAAAAGGC---AGTTTT-TC-------------------------------------------------------------------------GCGTTG-----------TGCGCGTGTGAAATAGT---------------CAACTTA-GAGCTTGTGACCTTAATCTAA-A----------GTCTTAA---A--------------------------CATC-----------------------CA----------------AAATAAATAGAAAT-----A-A-----GGTTCGAGAACACGCGCAATTAACCCCACT-----AAGTGTACGATAAAAA-------------AAGAAGAGCTT-TA--ACAACA--AC---AAA-CTATT--------TATGA-----------------------------------------------AAGA------C-CAGTCTTAACCACTTCCTCA------ATCTAACGCCCTTCGA-AATGAATTASizeHit CountTotal NormTotal
No Reads
dp5
TCTCATCTGTCTCTCTAGTGTGTATTGCTAACTAATTTTC---CAT-AAAAAAACCT--------------------ATTCGTAACGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................TTTC---CAT-AAAAAAACCT--------------------ATTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
TCTCATCTGCCACTCTAGTGTGTATTGCTAACTAATTTTC---CAT-AAAAAAACCT--------------------ATTCGAAACGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTTCCTCA------ATTCAACGCCCTCCAC-ATTGT----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTG-------------------TTTCGCAGAACGCGTCT-----------AACACAGTCGAAACAATTTGGCTCAAAACTAAAAACTACAAACTACT-ACGCGT----------AATC-C-------------------------G-TTGTGGAAGAAACTG---A---TT-TC--GGTTTGCCAAGGTGTGTAAAGGT---------CGGGCGTCGCTTAACGTTTTCAATCAATTTGTAACTGCCGGCCATAGCGTGACCCGAACGCGCGTGCTTTACCATTG-----------CTG---T-ATAACTGTGACCTTAATTTAAAC----------AAATAA------------------------TATCAGAA-----------------------------------------GCCAAATAC----AAGCAAGCTT-C-----AAACAACAAACACGCGCAATTAAACACTAA-----AAGCGAACGAGCAGA-------------------GAGCTT-TA---CAACA--ACAACAA---C---AAGAGCACTAT---------------------------------------------------G------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................GAAACTG---A---TT-TC--GGTTTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------------GCCAAATAC----AAGCAAGCTT-C-----AAAC..............................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
...................................GTCT-----------AACACAGTCGAAACAATTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................ACCATTG-----------CTG---T-ATAACTG.........................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGTGGAAGAAACTG---A---TT-TC--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................GTTTGCCAAGGTGTGTAAAGGT---------CGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-------------------GAGCTT-TA---CAACA--ACAA......................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAACA--ACAACAA---C---AAGAGCA.....................................................................................................................21200.051000000000000000000000000000100000000000000000000000000000000000
droMoj3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACCTTAATTTAAAC----------ACAAAAA---A--------------------------A-GTG--AAA-TATAT-AC-TGC---TA---G-TT-----------------------------G-G-----AAACAAGAAACACGCGCAATTAAACGTGAA-----ACGCGAACAAGTCGA-------------------AAGCTT-TA---CAACA--ACAACAA---C---AAA-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAAA---TTTC---------GATTTTGTCGTTTGTTTGCC---CAA-TTTA---TCC-----ATT------------T------------------------------------ATCC-AA-AAGGTGTG-TGTGT-----------GTGTGTAA---------------------------------------AAGGTCGAGAGAATCGGGCGTTGGTT----TTTTCGTTTG--TTGTAACTCT--------GCGTAACCTGTAT--GTGTGTTATACTGTTAGCCATAGATGTGTG---T-ATCTCTGTGACCTTAATTTAAAC----------ACCAAAAGTAATATTTATATATATATATATTATCAGAA-----------------------------------------GTAGAATACGTG-CTACTAGCTT-T-----GAACAAGAAACACGCGCAATTAAACACACAAAAAAAAGCGAGCGACCAAA-------------------GAGCTT-TA---CAACA--ACAACAA---C---AA--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................TGTAACTCT--------GCGTAACCTGTAT--GT.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
...............................................................................................................................................................................................................................................TAACTCT--------GCGTAACCTGTAT--G..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 09:47 AM