ID:

dsi_3095

 Coordinate:

3l:7490399-7490548 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGAGATTTGGTTCCGGAAACGAAAGCCCGATGATACGTGGATGCTGCAGTGCATGTCGGAGGACATAAAGAACGCCTGGACCGAGGAGATCTCCAAACTGCTCTGGAAGCAGGCGAAACGAAACCGAGGTACGTGTGACTTACAATATCTTTCACATATCTGATTAGTCTACTTCCAACTAATACCTATCACTTTGCAGAAGTTCGCCTGGCGGAGATGTCCTCGATGGGCATTGGCAGCAAGCCCTGT
**********************************************************************...((((((..(((((.((.........)).))).))...))))))...........*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................................................................GCATTGGCAGCAAGCCCTG. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................TGGATGCTGCAGTGCATGTC................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................GAACGCCTGGACCGAGGAGATCTCC........................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................TGTCGGAGGACATAAAGAACGCCT............................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................ATACGTGGATGCTGCAGTGCA.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................GAGGACATAAAGAACGCCTGGACCGA..................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................TCTGGAAGCAGGCGAAACGAAACCG........................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.CGAGCTTTGATTCCGGA........................................................................................................................................................................................................................................ 17 2 7 0.43 3 0 0 0 0 0 3 0 0 0
.............................................TGCAGAGCATGTCGGAGG........................................................................................................................................................................................... 18 1 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................CATCAAGAATGCCTGGAC........................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 1 0 0
.................................................GTGCATGGCGGAGGACGTAT..................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0
...................ACGAAAGTCCGACGATA...................................................................................................................................................................................................................... 17 2 7 0.14 1 0 1 0 0 0 0 0 0 0
..GAGATTTGGGTCAGGAAA...................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 1 0 0 0
.................AAACTAAAGCCCGCTGAT....................................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 1 0
.....................................................ATGGCGGAGGACGTAAA.................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................TCTTTCAAATGTCTGATT.................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGCTCTAAACCAAGGCCTTTGCTTTCGGGCTACTATGCACCTACGACGTCACGTACAGCCTCCTGTATTTCTTGCGGACCTGGCTCCTCTAGAGGTTTGACGAGACCTTCGTCCGCTTTGCTTTGGCTCCATGCACACTGAATGTTATAGAAAGTGTATAGACTAATCAGATGAAGGTTGATTATGGATAGTGAAACGTCTTCAAGCGGACCGCCTCTACAGGAGCTACCCGTAACCGTCGTTCGGGACA
***************************************************************************************************************************...((((((..(((((.((.........)).))).))...))))))...........********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body
........................................................................................................................................................................GGATGAAGGTTGATTA.................................................................. 16 1 1 2.00 2 1 1 0 0
........................................................................................CTAGGGGTTTGATGAGAGC............................................................................................................................................... 19 3 5 0.20 1 0 0 0 1
............................................................................................................................GGCTCCATGCACACG............................................................................................................... 15 1 6 0.17 1 0 0 1 0
................................................................................................................................................................................................GAAACGTCTTCATGC........................................... 15 1 8 0.13 1 0 0 1 0
...............................................................................CTGGCTCCTCTGGTGGTT......................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0
.........................................................................................................................................................................................................TCAAGCGGCCCGCCT.................................. 15 1 11 0.09 1 0 0 1 0

Generated: 04/24/2015 at 10:20 AM