ID:

dsi_30884

Coordinate:

3r:10903221-10903370 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-44.0	-44.0	-43.9	-43.7

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

TACAGATACTCTCTTCTTCGCGAGCGGCAGCTGCAAACGCATCTAAAAAGGTAAATAGAGCTTCGGGACCCCATGTCGCTTATCTTCGGGTTAGGGTAAACAATCCAGCTTATCTGCAGGTCCATAAAGATCTGCAGATCTCGAGAAATCCAGACGTCGCTTGTTTATGGGTGGCTTCGGGGCTTCCTAGAACGAAACGTCAGAGTTTTAGATACATCTTGTGATTGTCGCCGGGTTTGCCACTTACTTT ************************************************((........((..((((((((..(((((((((...(((((....((..............(((((((((((......)))))))))))..............))...)))))...)))))))))...)))).)))).))........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	M025 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
...............................................................................................................................................................................TTCGGGGCTTCCTAGAACGAAACGTC.................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............CTTCTTCGCGAGCGGCAGGTGCA.......................................................................................................................................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0
.........TCTCTTCTTCGCGAGCGGCAGCTGCAAA.....................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.................................................GGTAAATAGAGTTTCGGCCCC....................................................................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................................................................TTTTATCTTCGGGTTTGGGTAAA......................................................................................................................................................	23	3	2	1.00	2	0	0	0	0	0	2	0	0	0
TACAGATACTCTCTTCTTCGCGAGCGGC..............................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0
........................................................AGACCTTCGGGACCC...................................................................................................................................................................................	15	1	7	0.71	5	5	0	0	0	0	0	0	0	0
...................................................TAAATAGAGCTTCGG........................................................................................................................................................................................	15	0	3	0.33	1	0	0	0	0	0	0	1	0	0
................................................GGGTAAATAGTGCTTCGAGA......................................................................................................................................................................................	20	3	3	0.33	1	0	0	0	0	0	0	0	1	0
.................................................GGTAAATAGAGTTTCG.........................................................................................................................................................................................	16	1	10	0.20	2	2	0	0	0	0	0	0	0	0
..................................................................................................................................................AATACAGACGTCGCT.........................................................................................	15	1	6	0.17	1	1	0	0	0	0	0	0	0	0
.................................................................................................................CTGCACGTCCATAAA..........................................................................................................................	15	1	11	0.09	1	0	0	0	0	0	0	0	0	1
......................................................ATAGATTTTCGGGACCC...................................................................................................................................................................................	17	2	12	0.08	1	1	0	0	0	0	0	0	0	0
..............................................AAGGGTAAATAGAGTTTC..........................................................................................................................................................................................	18	2	14	0.07	1	1	0	0	0	0	0	0	0	0
............................................AAAAGGGTAAATAGAGTT............................................................................................................................................................................................	18	2	20	0.05	1	1	0	0	0	0	0	0	0	0

Anti-sense strand reads

ATGTCTATGAGAGAAGAAGCGCTCGCCGTCGACGTTTGCGTAGATTTTTCCATTTATCTCGAAGCCCTGGGGTACAGCGAATAGAAGCCCAATCCCATTTGTTAGGTCGAATAGACGTCCAGGTATTTCTAGACGTCTAGAGCTCTTTAGGTCTGCAGCGAACAAATACCCACCGAAGCCCCGAAGGATCTTGCTTTGCAGTCTCAAAATCTATGTAGAACACTAACAGCGGCCCAAACGGTGAATGAAA ************************************************((........((..((((((((..(((((((((...(((((....((..............(((((((((((......)))))))))))..............))...)))))...)))))))))...)))).)))).))........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
............................................................................................ACCCACTTGTTAGGTCGAAT..........................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0	0
..............................................................................................CCACTTGTTAGGTCGA............................................................................................................................................	16	1	2	0.50	1	0	0	1	0	0	0
.............................................................................................CCCACTTGTTAGGTGGGATA.........................................................................................................................................	20	3	3	0.33	1	1	0	0	0	0	0
.............................................................................................CCCACTTGTTAGGTCG.............................................................................................................................................	16	1	3	0.33	1	1	0	0	0	0	0
.............................................................................................CCCACTTGTTAGGTCGAG...........................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0
..............................................................................................CCACTTGTTAGGTCG.............................................................................................................................................	15	1	8	0.13	1	1	0	0	0	0	0
.............................................................................................CCCACTTGTTAGGTTGAAC..........................................................................................................................................	19	3	17	0.12	2	0	0	0	2	0	0
...............................................................................................CATGTGTTAGCTCGAGTAGA.......................................................................................................................................	20	3	10	0.10	1	0	0	1	0	0	0
............................................................................................TCCCACTTGTTAGGT...............................................................................................................................................	15	1	11	0.09	1	1	0	0	0	0	0
.................................................................................................TTGGTTAGGTCGAAT..........................................................................................................................................	15	1	14	0.07	1	0	0	0	0	1	0
ATGTCTGTGAGAGGAGA.........................................................................................................................................................................................................................................	17	2	15	0.07	1	0	0	0	0	0	1
.............................................................................................CCCATTTGTTAGGTT..............................................................................................................................................	15	1	18	0.06	1	1	0	0	0	0	0
...............................................................................................................................................................GAACATAAACCCACCGAA.........................................................................	18	2	20	0.05	1	0	1	0	0	0	0

Generated: 04/24/2015 at 10:53 AM