ID:

dsi_30858

Coordinate:

3r:10902797-10902946 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-14.0

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(TCTCTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

AGTGCATAAAAATCGGTTTTCTTTGCGGTTCGGTTCCGTTTTTGTTTATTTGTAGTGTGCGTGTGTTTCTGTTTCCACCTTTCTATCTCTATCCCTGTCTCTTTCTCTGCCCCACCGCCCGTCTCCTTCTCTCTTTCGAGAAAGAGAACGCGTGCTTTTGTTTTCGATTACGTTTACTACATTTTTTGTACGCCCCATAGAAAAAACATGACGAAATGTTGTTGTTGAAAACGAGAAATAAATACAAGTG ********************************************************************************************************.........(((.((((((.(((((......))))).))).))).)))**********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..........................................................................................................CTGCCCCACCGCCCGTCTCCTT..........................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
.....................................................................................................................................TTTCGAGAAAGAGAACGCGTG................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................AAATGTTGTTGTTGA......................	15	0	4	0.25	1	0	0	1	0	0
........................GCGGTTCGATTCCGT...................................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	1	0
............................................................................................................................................................................................TACGTCCCAGAGAAAAA.............................................	17	2	12	0.08	1	1	0	0	0	0
AGTACAAAAAAATCGGTT........................................................................................................................................................................................................................................	18	2	17	0.06	1	1	0	0	0	0
.....................................................................................................................................................................................TTTTTTGTCCACACCATAGA.................................................	20	3	19	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................GTTGAATACGAAAAAGAAATA......	21	3	19	0.05	1	1	0	0	0	0
.........................CGGTTCGATCCCGTTT.................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0
.........................CGGTTCGATTCCGTT..................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	1	0	0
...........................................................................................................................................................................................................................TGTTGTTGAAAAAGA................	15	1	20	0.05	1	0	0	0	0	1
..............................................................................................................................................................................................................................TGTTGAATACGAAAAAGAAAT.......	21	3	20	0.05	1	1	0	0	0	0

Anti-sense strand reads

TCACGTATTTTTAGCCAAAAGAAACGCCAAGCCAAGGCAAAAACAAATAAACATCACACGCACACAAAGACAAAGGTGGAAAGATAGAGATAGGGACAGAGAAAGAGACGGGGTGGCGGGCAGAGGAAGAGAGAAAGCTCTTTCTCTTGCGCACGAAAACAAAAGCTAATGCAAATGATGTAAAAAACATGCGGGGTATCTTTTTTGTACTGCTTTACAACAACAACTTTTGCTCTTTATTTATGTTCAC **********************************************************************************************.........(((.((((((.(((((......))))).))).))).)))********************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries
.................................AGGGCAAAAACAAATAAA.......................................................................................................................................................................................................	18	1	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................................................................................GTGCTGCTGTACAACAACAC........................	20	3	9	0.11	1	1	0	0	0	0	0
.............................................................................................GTAAAGAGAAAGAGACGCGGT........................................................................................................................................	21	3	10	0.10	1	0	0	0	1	0	0
.......................................................................................................................GCAGAGAAAGAGAGAAAGATGT.............................................................................................................	22	3	10	0.10	1	0	0	1	0	0	0
........................................................................AGCGGGGAAAGATAGAGATAG.............................................................................................................................................................	21	3	11	0.09	1	0	0	0	0	1	0
...............................................................................................................................................................................................................TGCTGCTGTACAACAACACC.......................	20	3	13	0.08	1	1	0	0	0	0	0
...................................................................ATACAAAGGTTGAAAGAGAGA..................................................................................................................................................................	21	3	18	0.06	1	0	0	1	0	0	0
...................................................................................................................................AGAAAGCTCTTTCTCGA......................................................................................................	17	2	18	0.06	1	1	0	0	0	0	0
..................................................................................................................................................................................TGTAAAAGACATGCG.........................................................	15	1	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:51 AM