ID:

dsi_3084

 Coordinate:

3l:16107970-16108119 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGGTTGCGAATTGGGGGAGTATGGAGCAGGCGTGGGAGCTGTGGAGTAGTGGAACATGGGAGTCCTGGGTGTTATCATGAATTACTTGGCCACGGGTGAGCGGGTGAATAAATAAAAGCCGAGCCGTTGAACTTGTCAGACAGAATTTATGTTATCGCTCGTTTTCTCTTTCCGCCTAATTCTTCCCACACCTGGCCAGGTGACACAGGAGATGCAGCAGATACTCGAGGGGCGTGGCTTCGAGCTCAC
**************************************************.......(((.....((((((((......((((((...(((...(((.((((((((((((((((......((((........)))).........))))))....)))))))))).))).....))))))))).....))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 SRR553488
RT_0-2 hours eggs
.........................................GTGGCGTAGTGGAACA................................................................................................................................................................................................. 16 1 5 1.60 8 8 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCGAGGGGCGTGGCT.......... 15 0 2 0.50 1 1 0 0 0 0 0 0 0
....................................................................................................................................................TATGTCATCGTTCGTTTTCT.................................................................................. 20 2 2 0.50 1 0 0 0 1 0 0 0 0
.........................................GTGGCGTAGTGGAAC.................................................................................................................................................................................................. 15 1 6 0.33 2 1 0 1 0 0 0 0 0
...........TGGGGGGAGTATGGTGCA............................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 1 0 0
.......................................................CATGGGAATCCTGGGTGCT................................................................................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0 0 0 0
........................................TGTGGCGTAGTGGAAC.................................................................................................................................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................CATGGGAATCCTGGGTG.................................................................................................................................................................................. 17 1 3 0.33 1 0 1 0 0 0 0 0 0
..................................................................................................................................AACTTGTCCGACAGA......................................................................................................... 15 1 11 0.27 3 0 3 0 0 0 0 0 0
........................................................ATGGGAATCCTGGGT................................................................................................................................................................................... 15 1 12 0.17 2 0 0 1 0 1 0 0 0
....................TATGGAGCAGTCGTG....................................................................................................................................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0
.....................................................................................................................AGCCGCGCCGTTGAA...................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0
...................................GGAGCTGTGGCGCAGTGGTA................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0
............................................................................CATGAATTACCTGACGAC............................................................................................................................................................ 18 3 20 0.10 2 0 0 0 0 0 0 2 0
..........................GCAGGCGTGGGACGTGT............................................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0 0
...........TGGGGGGAGTATGGA................................................................................................................................................................................................................................ 15 1 12 0.08 1 1 0 0 0 0 0 0 0
.........................................GTGACGTAGTGGAACAAGG.............................................................................................................................................................................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0
...........................................................................................................................GCCGTTGAAACTGTAAGAC............................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 0 1
......................................GCTGTGGTGTAGTGG..................................................................................................................................................................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0 0
..........................................TGGCGTAGTGGAACA................................................................................................................................................................................................. 15 1 15 0.07 1 1 0 0 0 0 0 0 0
.......................................................CATGCGAATCCTGGGTG.................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 1 0 0 0
........GAAGTCGGGGAGTATG.................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACCCAACGCTTAACCCCCTCATACCTCGTCCGCACCCTCGACACCTCATCACCTTGTACCCTCAGGACCCACAATAGTACTTAATGAACCGGTGCCCACTCGCCCACTTATTTATTTTCGGCTCGGCAACTTGAACAGTCTGTCTTAAATACAATAGCGAGCAAAAGAGAAAGGCGGATTAAGAAGGGTGTGGACCGGTCCACTGTGTCCTCTACGTCGTCTATGAGCTCCCCGCACCGAAGCTCGAGTG
**************************************************.......(((.....((((((((......((((((...(((...(((.((((((((((((((((......((((........)))).........))))))....)))))))))).))).....))))))))).....))))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
......................................................................TCAATAGTACTTAGTG.................................................................................................................................................................... 16 2 20 0.45 9 0 7 1 0 0 1 0 0 0
..................................................................................................CTCGCCCACTTATCTAGT...................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
...............................................................................TTTAGTGAACCGGTGCCCGCT...................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................AGTAGGGTGTGGCCCGGGC.................................................. 19 3 5 0.20 1 0 0 0 1 0 0 0 0 0
..................................................ACGTTGTACCATCAGGATC..................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................AGTCTGTCTTAAAGA................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................AAAAAAAAGGCGGATTAGGAA................................................................. 21 3 17 0.06 1 0 0 0 0 0 0 0 1 0
...................................................GTTTGTACCCTCAGGACCTA................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1
.....................................................TTGTACCATCAGGACCTA................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CTGATTAAGAAGGGTTTAG......................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 01:54 AM