ID:

dsi_30829

 Coordinate:

3r:10902277-10902529 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-3.7 -3.6 -3.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGTCCAAAAAACCGTTGTTTATTGGCAGCTCTCAGGTTTTTACGAAAAAGGTGAACATTGAATTTAGGATCCGAAAAAACGTGCGGGCCAAAAGATGTAAATATATTGCATCAAGTGTTAATAATCATTTTCAGAAACATAAGCTAAAAAACTGTGTGTGCGTGACATCGTGTGTTTTGGATACGTTTTATGAATGAGCGCGGGTGTGAACGAATTTTTCGGATTCAACAACAAATAACGAACGCGATAAACAGAGGCACACTCACACAACCGCGATTAAAAAGGCACTCTCCATTTAACAATAAAGAAATCTCTTGTTTTTCGAAAAGCAAATAGAAAATACGAAAATGTAG
********************************************************************************************************************************************************************************************.............((((.((((.......)))).)))).................************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.............................................................................................................................................................................................................................GATTCAACAACAAATAACGAAC.............................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................TACGAAAAAGGTGAACATTGAATTTAGGA............................................................................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................AGAAATCTCTTGTTTTTCGAAAA......................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATGAATGAGCGCGGGTGTGAACGA............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................GCTCTCAGGTTTTTACGAAAAAGGT............................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................AAACTGTGTGTGCGTGACAT......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........AAACCGTTGTTTATTGGC....................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................CATCGTGTGTTTTGGATACGT....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................GGTGAACATTGAATTTAGGATC.......................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................TCTCAGGGTTTTACGAAAAA................................................................................................................................................................................................................................................................................................................ 20 1 2 0.50 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................TTTTCGGAAACAGAAGCAAAAAAA.......................................................................................................................................................................................................... 24 3 3 0.33 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................GAAACATCAGCCAAAAAACT........................................................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 0 0 1 0 0
.GTACAAAAACCCGTTGTT.............................................................................................................................................................................................................................................................................................................................................. 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCAGGTTTTTTGGCAACAAATAACCGTCGAGAGTCCAAAAATGCTTTTTCCACTTGTAACTTAAATCCTAGGCTTTTTTGCACGCCCGGTTTTCTACATTTATATAACGTAGTTCACAATTATTAGTAAAAGTCTTTGTATTCGATTTTTTGACACACACGCACTGTAGCACACAAAACCTATGCAAAATACTTACTCGCGCCCACACTTGCTTAAAAAGCCTAAGTTGTTGTTTATTGCTTGCGCTATTTGTCTCCGTGTGAGTGTGTTGGCGCTAATTTTTCCGTGAGAGGTAAATTGTTATTTCTTTAGAGAACAAAAAGCTTTTCGTTTATCTTTTATGCTTTTACATC
**************************************************************************************************************.............((((.((((.......)))).)))).................******************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
................................................................GTCCTAGGCGTTTTTGAACGC............................................................................................................................................................................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................TGAGTGGGTCGGGGCTAATT......................................................................... 20 3 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................CGATTTTTCGACACACACTAA.............................................................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0 0
.........................................................................................................................................GTAATCGATTTTTTGA........................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 0 1 0 0
............................................................................................TCTCCATTTAGATAACGT................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................................TAAGTTGTTATTTCTTTGGAT....................................... 21 3 9 0.11 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................GAGTGGGTCGGGGCTAATT......................................................................... 19 3 14 0.07 1 0 0 0 0 0 1
...................................................................CCAGGCTATCTTGCACGC............................................................................................................................................................................................................................................................................ 18 3 15 0.07 1 1 0 0 0 0 0

Generated: 04/24/2015 at 10:50 AM